Wall clock time and date at job start Tue Mar 31 2020 15:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.52146 * 2 1 4 4 C 1.53039 * 109.49474 * 239.92559 * 2 1 3 5 5 C 1.53045 * 109.53884 * 178.68419 * 4 2 1 6 6 C 1.53192 * 109.31256 * 61.35739 * 5 4 2 7 7 N 1.46925 * 108.78012 * 305.37032 * 6 5 4 8 8 C 1.34780 * 120.62858 * 233.58770 * 7 6 5 9 9 O 1.21666 * 119.99459 * 178.50547 * 8 7 6 10 10 C 1.46883 * 120.00202 * 358.50259 * 8 7 6 11 11 C 1.36117 * 125.43821 * 333.95645 * 10 8 7 12 12 C 1.41699 * 107.75454 * 180.26395 * 11 10 8 13 13 C 1.40014 * 133.35442 * 179.97438 * 12 11 10 14 14 C 1.36586 * 119.82817 * 180.02562 * 13 12 11 15 15 C 1.38853 * 120.60142 * 0.02562 * 14 13 12 16 16 C 1.37848 * 120.63171 * 359.97438 * 15 14 13 17 17 C 1.39083 * 119.81456 * 0.02562 * 16 15 14 18 18 N 1.37832 * 133.16134 * 179.97438 * 17 16 15 19 19 C 1.36896 * 125.62132 * 359.97304 * 18 17 16 20 20 H 1.07997 * 120.00061 * 219.22870 * 19 18 17 21 21 C 1.39009 * 119.99659 * 39.23246 * 19 18 17 22 22 N 1.31344 * 120.00588 * 17.16688 * 21 19 18 23 23 Si 1.86800 * 119.99569 * 197.16672 * 21 19 18 24 24 H 1.48505 * 109.47152 * 90.00221 * 23 21 19 25 25 H 1.48502 * 109.46861 * 209.99817 * 23 21 19 26 26 H 1.48499 * 109.47187 * 329.99944 * 23 21 19 27 27 C 1.46921 * 118.73500 * 53.85529 * 7 6 5 28 28 H 1.09006 * 109.46849 * 180.08197 * 1 2 3 29 29 H 1.09000 * 109.46811 * 300.07526 * 1 2 3 30 30 H 1.08998 * 109.47371 * 60.07716 * 1 2 3 31 31 H 0.96698 * 113.99927 * 59.92729 * 3 2 1 32 32 H 1.08996 * 109.46313 * 58.65976 * 4 2 1 33 33 H 1.09008 * 109.44861 * 298.69106 * 4 2 1 34 34 H 1.09002 * 109.49096 * 301.41119 * 5 4 2 35 35 H 1.08994 * 109.49855 * 181.31383 * 5 4 2 36 36 H 1.09005 * 109.58169 * 185.57805 * 6 5 4 37 37 H 1.09002 * 109.70389 * 65.23037 * 6 5 4 38 38 H 1.08010 * 126.12635 * 0.26335 * 11 10 8 39 39 H 1.08000 * 120.08602 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.69718 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.68202 * 180.02562 * 15 14 13 42 42 H 1.07996 * 120.08883 * 180.02562 * 16 15 14 43 43 H 0.97002 * 120.00652 * 174.97047 * 22 21 19 44 44 H 1.09003 * 109.58757 * 65.93863 * 27 7 6 45 45 H 1.09006 * 109.58643 * 186.35247 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0075 1.3468 0.0000 4 6 2.0407 -0.7229 -1.2484 5 6 3.5708 -0.6949 -1.2662 6 6 4.1053 -1.4266 -0.0309 7 7 3.5046 -0.8292 1.1695 8 6 4.2813 -0.3865 2.1782 9 8 3.7731 0.1310 3.1550 10 6 5.7410 -0.5289 2.0982 11 6 6.4034 -1.4749 1.3777 12 6 7.7923 -1.2721 1.5720 13 6 8.9351 -1.9244 1.0937 14 6 10.1737 -1.4868 1.4677 15 6 10.3117 -0.3993 2.3200 16 6 9.2015 0.2590 2.8039 17 6 7.9297 -0.1682 2.4371 18 7 6.6611 0.2724 2.7476 19 6 6.3617 1.3290 3.5649 20 1 5.5245 1.2659 4.2442 21 6 7.1354 2.4830 3.5204 22 7 7.9228 2.7067 2.4933 23 14 7.0551 3.7157 4.9216 24 1 8.0748 3.3697 5.9444 25 1 7.3227 5.0791 4.3974 26 1 5.7042 3.6783 5.5371 27 6 2.0412 -0.7290 1.2519 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5150 0.8893 30 1 -0.3634 0.5126 -0.8906 31 1 1.7217 1.8654 0.7645 32 1 1.6581 -0.2243 -2.1389 33 1 1.6967 -1.7572 -1.2352 34 1 3.9158 0.3390 -1.2542 35 1 3.9333 -1.1895 -2.1672 36 1 5.1896 -1.3245 0.0135 37 1 3.8397 -2.4824 -0.0856 38 1 5.9513 -2.2427 0.7672 39 1 8.8375 -2.7719 0.4314 40 1 11.0538 -1.9918 1.0978 41 1 11.2982 -0.0656 2.6058 42 1 9.3189 1.1041 3.4659 43 1 8.4070 3.5446 2.4266 44 1 1.6085 -1.7284 1.2984 45 1 1.7630 -0.1664 2.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611238415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:46 Heat of formation + Delta-G solvation = -9.810016 kcal Electronic energy + Delta-G solvation = -29121.039833 eV Core-core repulsion = 25297.354145 eV Total energy + Delta-G solvation = -3823.685687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.67786 -39.58071 -37.68007 -35.78698 -35.36368 -33.64569 -32.36755 -31.36308 -30.66058 -28.94556 -28.51155 -26.59253 -25.50872 -24.85325 -22.53307 -22.20949 -20.91503 -20.21191 -19.79317 -18.90868 -17.68929 -16.57922 -16.18215 -15.81319 -15.35812 -14.99639 -14.80990 -14.78569 -14.65997 -14.25559 -13.83355 -13.47799 -13.22556 -13.06272 -12.91277 -12.83095 -12.52717 -12.39720 -12.30952 -12.00154 -11.85790 -11.72406 -11.54364 -11.31544 -11.18616 -10.86857 -10.75000 -10.63788 -10.42737 -10.33397 -10.16649 -9.93944 -9.70460 -9.19109 -9.06261 -8.55562 -8.17151 -7.11119 -6.78193 -6.55933 -4.39756 1.89737 2.79699 3.03384 3.05951 3.10971 3.16509 3.29855 3.86139 4.19124 4.30357 4.60321 4.71070 4.77436 4.81197 4.87291 5.11824 5.17489 5.33078 5.37425 5.51828 5.58665 5.60590 5.71775 5.79347 5.85572 5.88029 5.95515 5.99080 6.03237 6.11755 6.15653 6.25403 6.33518 6.55278 6.58930 6.71103 6.84542 6.97088 7.06334 7.12826 7.21621 7.52429 7.61472 7.71975 7.77976 7.84369 8.00737 8.13764 8.44932 8.76779 8.96731 9.35658 10.24047 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.005024 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.414540 B = 5572.388735 C = 7218.102276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.115 3.885 3 O -0.548 6.548 4 C -0.103 4.103 5 C -0.132 4.132 6 C 0.072 3.928 7 N -0.600 5.600 8 C 0.597 3.403 9 O -0.543 6.543 10 C -0.015 4.015 11 C -0.226 4.226 12 C -0.121 4.121 13 C -0.094 4.094 14 C -0.154 4.154 15 C -0.156 4.156 16 C -0.047 4.047 17 C 0.084 3.916 18 N -0.227 5.227 19 C -0.342 4.342 20 H 0.121 0.879 21 C 0.051 3.949 22 N -0.821 5.821 23 Si 0.931 3.069 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.261 1.261 27 C 0.092 3.908 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.376 0.624 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.060 0.940 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.282 0.718 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 -6.157 -6.027 11.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.073 3.927 3 O -0.354 6.354 4 C -0.140 4.140 5 C -0.170 4.170 6 C -0.050 4.050 7 N -0.333 5.333 8 C 0.388 3.612 9 O -0.420 6.420 10 C -0.133 4.133 11 C -0.253 4.253 12 C -0.126 4.126 13 C -0.113 4.113 14 C -0.173 4.173 15 C -0.177 4.177 16 C -0.066 4.066 17 C -0.030 4.030 18 N 0.113 4.887 19 C -0.471 4.471 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.450 5.450 23 Si 0.755 3.245 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.031 4.031 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.223 0.777 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.925 -5.623 -5.879 11.358 hybrid contribution -0.387 0.925 0.863 1.323 sum -8.313 -4.699 -5.016 10.786 Atomic orbital electron populations 1.22436 0.95580 1.02656 1.02685 1.21627 0.92003 0.83522 0.95534 1.86564 1.77299 1.22357 1.49183 1.21507 0.96851 0.99344 0.96335 1.21851 0.94768 1.02670 0.97704 1.22761 1.03029 0.95563 0.83637 1.47467 1.05165 1.62387 1.18320 1.17227 0.85387 0.76705 0.81845 1.90710 1.75218 1.43970 1.32144 1.19556 0.89348 1.01471 1.02968 1.20577 0.92011 1.04592 1.08144 1.17957 0.93054 0.98543 1.03029 1.20002 0.91317 0.99350 1.00663 1.20262 0.96165 0.99138 1.01772 1.20525 0.96840 0.98497 1.01820 1.20105 0.89444 0.97716 0.99350 1.18142 0.86226 0.95976 1.02660 1.39932 1.02069 1.18897 1.27801 1.20128 1.17003 0.92487 1.17434 0.86195 1.25720 0.94829 0.98264 0.97332 1.69973 1.24132 1.24969 1.25910 0.85843 0.79857 0.78483 0.80274 1.19291 1.20199 1.18540 1.22252 0.81054 1.00752 0.99063 0.91573 0.92128 0.91633 0.77668 0.91438 0.90930 0.90377 0.91102 0.85043 0.92209 0.84272 0.87905 0.88036 0.87783 0.86929 0.90773 0.91359 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.82 37.16 0.33 -1.31 16 2 C 0.11 1.42 1.01 -90.28 -0.09 1.33 16 3 O -0.55 -8.24 12.18 -35.23 -0.43 -8.67 16 4 C -0.10 -1.18 4.92 -26.69 -0.13 -1.31 16 5 C -0.13 -1.77 5.94 -26.61 -0.16 -1.92 16 6 C 0.07 1.07 5.26 -3.71 -0.02 1.05 16 7 N -0.60 -10.51 2.91 -173.97 -0.51 -11.02 16 8 C 0.60 13.46 7.52 -12.76 -0.10 13.36 16 9 O -0.54 -13.61 14.70 5.22 0.08 -13.53 16 10 C -0.02 -0.37 6.42 -82.25 -0.53 -0.90 16 11 C -0.23 -4.88 8.48 -39.02 -0.33 -5.21 16 12 C -0.12 -2.81 6.16 -106.89 -0.66 -3.47 16 13 C -0.09 -1.90 10.06 -39.51 -0.40 -2.29 16 14 C -0.15 -2.98 9.97 -39.95 -0.40 -3.38 16 15 C -0.16 -3.25 10.02 -39.50 -0.40 -3.65 16 16 C -0.05 -1.13 8.57 -39.41 -0.34 -1.47 16 17 C 0.08 2.17 6.08 -83.84 -0.51 1.66 16 18 N -0.23 -6.11 2.82 -56.08 -0.16 -6.27 16 19 C -0.34 -9.39 9.09 -15.00 -0.14 -9.53 16 20 H 0.12 3.39 6.78 -52.49 -0.36 3.03 16 21 C 0.05 1.32 4.45 -17.47 -0.08 1.25 16 22 N -0.82 -21.81 10.94 55.50 0.61 -21.20 16 23 Si 0.93 19.86 29.59 -169.99 -5.03 14.83 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 27 C 0.09 1.32 5.40 -3.49 -0.02 1.30 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.38 4.88 9.05 45.56 0.41 5.30 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.08 1.29 7.61 -51.93 -0.40 0.90 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.13 2.22 3.47 -51.93 -0.18 2.04 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.14 2.46 5.67 -52.48 -0.30 2.16 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.11 2.81 6.48 -52.49 -0.34 2.47 16 43 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.45 7.00 -51.93 -0.36 1.08 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -31.76 356.33 -9.33 -41.10 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.31 Total: 13.89 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -3.96 Total: -14.50 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: -0.06 Total: -38.48 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.35 Total: -22.20 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.76 -9.33 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611238415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.285 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds