Wall clock time and date at job start Tue Mar 31 2020 15:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.52146 * 2 1 4 4 C 1.53039 * 109.49474 * 239.92559 * 2 1 3 5 5 C 1.53045 * 109.53884 * 178.68419 * 4 2 1 6 6 C 1.53192 * 109.31256 * 61.35739 * 5 4 2 7 7 N 1.46925 * 108.78012 * 305.37032 * 6 5 4 8 8 C 1.34780 * 120.62858 * 233.58770 * 7 6 5 9 9 O 1.21666 * 119.99459 * 178.50547 * 8 7 6 10 10 C 1.46883 * 120.00202 * 358.50259 * 8 7 6 11 11 C 1.36117 * 125.43821 * 333.95645 * 10 8 7 12 12 C 1.41699 * 107.75454 * 180.26395 * 11 10 8 13 13 C 1.40014 * 133.35442 * 179.97438 * 12 11 10 14 14 C 1.36586 * 119.82817 * 180.02562 * 13 12 11 15 15 C 1.38853 * 120.60142 * 0.02562 * 14 13 12 16 16 C 1.37848 * 120.63171 * 359.97438 * 15 14 13 17 17 C 1.39083 * 119.81456 * 0.02562 * 16 15 14 18 18 N 1.37832 * 133.16134 * 179.97438 * 17 16 15 19 19 C 1.36896 * 125.62132 * 359.97304 * 18 17 16 20 20 H 1.07997 * 120.00061 * 219.22870 * 19 18 17 21 21 C 1.39009 * 119.99659 * 39.23246 * 19 18 17 22 22 N 1.31344 * 120.00588 * 17.16688 * 21 19 18 23 23 Si 1.86800 * 119.99569 * 197.16672 * 21 19 18 24 24 H 1.48505 * 109.47152 * 90.00221 * 23 21 19 25 25 H 1.48502 * 109.46861 * 209.99817 * 23 21 19 26 26 H 1.48499 * 109.47187 * 329.99944 * 23 21 19 27 27 C 1.46921 * 118.73500 * 53.85529 * 7 6 5 28 28 H 1.09006 * 109.46849 * 180.08197 * 1 2 3 29 29 H 1.09000 * 109.46811 * 300.07526 * 1 2 3 30 30 H 1.08998 * 109.47371 * 60.07716 * 1 2 3 31 31 H 0.96698 * 113.99927 * 59.92729 * 3 2 1 32 32 H 1.08996 * 109.46313 * 58.65976 * 4 2 1 33 33 H 1.09008 * 109.44861 * 298.69106 * 4 2 1 34 34 H 1.09002 * 109.49096 * 301.41119 * 5 4 2 35 35 H 1.08994 * 109.49855 * 181.31383 * 5 4 2 36 36 H 1.09005 * 109.58169 * 185.57805 * 6 5 4 37 37 H 1.09002 * 109.70389 * 65.23037 * 6 5 4 38 38 H 1.08010 * 126.12635 * 0.26335 * 11 10 8 39 39 H 1.08000 * 120.08602 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.69718 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.68202 * 180.02562 * 15 14 13 42 42 H 1.07996 * 120.08883 * 180.02562 * 16 15 14 43 43 H 0.97002 * 120.00652 * 174.97047 * 22 21 19 44 44 H 1.09003 * 109.58757 * 65.93863 * 27 7 6 45 45 H 1.09006 * 109.58643 * 186.35247 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0075 1.3468 0.0000 4 6 2.0407 -0.7229 -1.2484 5 6 3.5708 -0.6949 -1.2662 6 6 4.1053 -1.4266 -0.0309 7 7 3.5046 -0.8292 1.1695 8 6 4.2813 -0.3865 2.1782 9 8 3.7731 0.1310 3.1550 10 6 5.7410 -0.5289 2.0982 11 6 6.4034 -1.4749 1.3777 12 6 7.7923 -1.2721 1.5720 13 6 8.9351 -1.9244 1.0937 14 6 10.1737 -1.4868 1.4677 15 6 10.3117 -0.3993 2.3200 16 6 9.2015 0.2590 2.8039 17 6 7.9297 -0.1682 2.4371 18 7 6.6611 0.2724 2.7476 19 6 6.3617 1.3290 3.5649 20 1 5.5245 1.2659 4.2442 21 6 7.1354 2.4830 3.5204 22 7 7.9228 2.7067 2.4933 23 14 7.0551 3.7157 4.9216 24 1 8.0748 3.3697 5.9444 25 1 7.3227 5.0791 4.3974 26 1 5.7042 3.6783 5.5371 27 6 2.0412 -0.7290 1.2519 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5150 0.8893 30 1 -0.3634 0.5126 -0.8906 31 1 1.7217 1.8654 0.7645 32 1 1.6581 -0.2243 -2.1389 33 1 1.6967 -1.7572 -1.2352 34 1 3.9158 0.3390 -1.2542 35 1 3.9333 -1.1895 -2.1672 36 1 5.1896 -1.3245 0.0135 37 1 3.8397 -2.4824 -0.0856 38 1 5.9513 -2.2427 0.7672 39 1 8.8375 -2.7719 0.4314 40 1 11.0538 -1.9918 1.0978 41 1 11.2982 -0.0656 2.6058 42 1 9.3189 1.1041 3.4659 43 1 8.4070 3.5446 2.4266 44 1 1.6085 -1.7284 1.2984 45 1 1.7630 -0.1664 2.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611238415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:45 Heat of formation + Delta-G solvation = -30.524136 kcal Electronic energy + Delta-G solvation = -29121.938064 eV Core-core repulsion = 25297.354145 eV Total energy + Delta-G solvation = -3824.583919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34625 -40.95096 -39.13227 -37.46709 -36.72948 -35.44820 -33.61050 -32.64665 -32.23496 -30.66400 -30.05256 -27.75177 -26.85762 -26.67089 -24.05263 -23.37986 -22.61959 -21.67720 -21.19376 -20.42680 -19.43958 -17.82591 -17.75195 -17.42161 -17.12503 -16.52577 -16.23038 -16.20708 -15.96024 -15.47391 -15.25419 -15.12467 -14.69028 -14.57086 -14.48099 -14.32788 -13.88392 -13.64706 -13.58590 -13.47912 -13.12556 -13.07295 -12.95339 -12.89224 -12.57611 -12.35585 -12.23963 -11.99052 -11.93920 -11.72712 -11.39482 -11.34202 -11.13669 -10.99024 -10.77500 -10.27925 -9.54262 -8.92939 -8.60794 -8.33008 -6.39315 0.19184 1.10634 1.26355 1.32508 1.40168 1.45437 1.82351 2.11638 2.45724 2.84491 3.05627 3.31728 3.38493 3.58652 3.80908 3.89085 3.93569 4.12129 4.26055 4.32745 4.43871 4.45698 4.54028 4.59603 4.67826 4.72306 4.77204 4.80519 4.84594 4.91114 4.97019 5.03545 5.10179 5.14430 5.21191 5.24205 5.25912 5.36817 5.46430 5.47562 5.63536 5.77985 5.92541 5.98550 6.24015 6.28154 6.46619 6.58076 6.74738 6.97245 7.26677 7.48075 8.34765 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.005024 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.414540 B = 5572.388735 C = 7218.102276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 O -0.576 6.576 4 C -0.101 4.101 5 C -0.127 4.127 6 C 0.066 3.934 7 N -0.589 5.589 8 C 0.585 3.415 9 O -0.586 6.586 10 C -0.048 4.048 11 C -0.198 4.198 12 C -0.148 4.148 13 C -0.085 4.085 14 C -0.155 4.155 15 C -0.139 4.139 16 C -0.091 4.091 17 C 0.058 3.942 18 N -0.263 5.263 19 C -0.375 4.375 20 H 0.093 0.907 21 C 0.016 3.984 22 N -0.853 5.853 23 Si 0.993 3.007 24 H -0.258 1.258 25 H -0.263 1.263 26 H -0.268 1.268 27 C 0.086 3.914 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.379 0.621 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.035 0.965 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.183 0.817 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.132 0.868 42 H 0.089 0.911 43 H 0.284 0.716 44 H 0.102 0.898 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -9.046 -8.490 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 O -0.382 6.382 4 C -0.138 4.138 5 C -0.166 4.166 6 C -0.054 4.054 7 N -0.321 5.321 8 C 0.376 3.624 9 O -0.468 6.468 10 C -0.164 4.164 11 C -0.225 4.225 12 C -0.153 4.153 13 C -0.103 4.103 14 C -0.174 4.174 15 C -0.160 4.160 16 C -0.111 4.111 17 C -0.056 4.056 18 N 0.075 4.925 19 C -0.503 4.503 20 H 0.111 0.889 21 C -0.193 4.193 22 N -0.483 5.483 23 Si 0.813 3.187 24 H -0.182 1.182 25 H -0.187 1.187 26 H -0.192 1.192 27 C -0.036 4.036 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.226 0.774 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.054 0.946 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.200 0.800 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.150 0.850 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.035 -8.541 -8.392 14.420 hybrid contribution -0.320 1.616 1.477 2.212 sum -8.355 -6.926 -6.915 12.868 Atomic orbital electron populations 1.22354 0.92768 1.04311 1.03011 1.21881 0.94082 0.82026 0.95022 1.86546 1.78156 1.24001 1.49533 1.21595 0.95085 1.01220 0.95913 1.21804 0.96488 1.00177 0.98088 1.22935 1.01724 0.97852 0.82932 1.47584 1.06343 1.60575 1.17554 1.17357 0.85382 0.77021 0.82637 1.90667 1.75730 1.46211 1.34188 1.20223 0.90402 1.01821 1.03986 1.21111 0.91410 1.03738 1.06207 1.18472 0.94791 0.98616 1.03409 1.20501 0.90328 0.99604 0.99900 1.20759 0.97697 0.98302 1.00605 1.20975 0.96936 0.97831 1.00225 1.20165 0.90460 0.98868 1.01609 1.18717 0.86405 0.97100 1.03379 1.40099 1.03038 1.19855 1.29546 1.19960 1.17532 0.94059 1.18725 0.88885 1.26477 0.94149 0.99335 0.99320 1.70044 1.25232 1.25503 1.27487 0.84972 0.79510 0.76687 0.77508 1.18240 1.18744 1.19193 1.22575 0.79020 1.02623 0.99412 0.89182 0.92154 0.91049 0.77358 0.90564 0.87528 0.94648 0.88058 0.87275 0.87986 0.80035 0.83647 0.83443 0.85008 0.89270 0.90592 0.87958 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 8.82 71.98 0.64 -2.04 16 2 C 0.11 2.57 1.01 -10.57 -0.01 2.56 16 3 O -0.58 -17.72 12.18 -148.98 -1.81 -19.53 16 4 C -0.10 -1.97 4.92 30.62 0.15 -1.82 16 5 C -0.13 -3.12 5.94 30.67 0.18 -2.94 16 6 C 0.07 1.82 5.26 86.36 0.45 2.27 16 7 N -0.59 -20.48 2.91 -822.55 -2.39 -22.87 16 8 C 0.59 27.68 7.52 86.51 0.65 28.33 16 9 O -0.59 -31.70 14.70 -4.24 -0.06 -31.76 16 10 C -0.05 -2.44 6.42 39.91 0.26 -2.18 16 11 C -0.20 -8.44 8.48 22.63 0.19 -8.25 16 12 C -0.15 -6.78 6.16 -21.34 -0.13 -6.91 16 13 C -0.08 -3.12 10.06 22.31 0.22 -2.90 16 14 C -0.15 -5.43 9.97 22.03 0.22 -5.21 16 15 C -0.14 -5.62 10.02 22.32 0.22 -5.40 16 16 C -0.09 -4.57 8.57 22.38 0.19 -4.37 16 17 C 0.06 3.11 6.08 39.06 0.24 3.35 16 18 N -0.26 -15.10 2.82 -331.35 -0.94 -16.04 16 19 C -0.37 -22.37 9.09 84.09 0.76 -21.61 16 20 H 0.09 5.83 6.78 -2.91 -0.02 5.81 16 21 C 0.02 0.89 4.45 84.95 0.38 1.27 16 22 N -0.85 -48.15 10.94 21.67 0.24 -47.92 16 23 Si 0.99 43.39 29.59 68.60 2.03 45.42 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 C 0.09 2.37 5.40 86.51 0.47 2.83 16 28 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.38 10.59 9.05 -74.06 -0.67 9.92 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.03 1.17 7.61 -2.39 -0.02 1.15 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 3.49 3.47 -2.38 -0.01 3.48 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.18 5.89 5.67 -2.91 -0.02 5.88 16 39 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 41 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.09 4.76 6.48 -2.91 -0.02 4.74 16 43 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.07 2.26 7.00 -2.38 -0.02 2.24 16 Total: -1.00 -78.02 356.33 2.51 -75.51 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: 0.36 Total: 40.20 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 5.09 Total: -23.01 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -3.09 Total: -86.82 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -1.88 Total: -51.30 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -78.02 2.51 -75.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611238415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.988 kcal (2) G-P(sol) polarization free energy of solvation -78.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds