Wall clock time and date at job start Tue Mar 31 2020 15:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.52237 * 2 1 4 4 C 1.34782 * 119.99910 * 58.72391 * 3 2 1 5 5 O 1.21670 * 119.99653 * 5.22399 * 4 3 2 6 6 C 1.46885 * 120.00064 * 185.23146 * 4 3 2 7 7 C 1.36118 * 125.43833 * 172.69783 * 6 4 3 8 8 C 1.41705 * 107.75098 * 179.97438 * 7 6 4 9 9 C 1.40014 * 133.34773 * 180.02562 * 8 7 6 10 10 C 1.36580 * 119.82919 * 179.75797 * 9 8 7 11 11 C 1.38856 * 120.59700 * 0.51447 * 10 9 8 12 12 C 1.37840 * 120.63571 * 359.46221 * 11 10 9 13 13 C 1.39091 * 119.81165 * 0.27481 * 12 11 10 14 14 N 1.37834 * 133.16316 * 179.97438 * 13 12 11 15 15 C 1.36892 * 125.62452 * 359.97438 * 14 13 12 16 16 H 1.07995 * 120.00255 * 133.58798 * 15 14 13 17 17 C 1.39015 * 119.99628 * 313.59002 * 15 14 13 18 18 N 1.31346 * 120.00085 * 356.25258 * 17 15 14 19 19 Si 1.86797 * 120.00078 * 176.25083 * 17 15 14 20 20 H 1.48505 * 109.46902 * 4.98874 * 19 17 15 21 21 H 1.48497 * 109.47204 * 124.98960 * 19 17 15 22 22 H 1.48501 * 109.47191 * 244.99098 * 19 17 15 23 23 C 1.53184 * 109.57350 * 239.84419 * 2 1 3 24 24 C 1.53174 * 109.03256 * 183.08378 * 23 2 1 25 25 C 1.53097 * 109.16559 * 56.98041 * 24 23 2 26 26 O 1.42899 * 109.41390 * 302.38848 * 25 24 23 27 27 C 1.42904 * 114.09655 * 61.16207 * 26 25 24 28 28 H 1.08997 * 109.47011 * 59.99861 * 1 2 3 29 29 H 1.09005 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47189 * 299.99803 * 1 2 3 31 31 H 0.96996 * 120.00382 * 238.72233 * 3 2 1 32 32 H 1.08002 * 126.12328 * 0.02562 * 7 6 4 33 33 H 1.08007 * 120.08883 * 0.02562 * 9 8 7 34 34 H 1.08006 * 119.70422 * 180.25348 * 10 9 8 35 35 H 1.08005 * 119.68231 * 179.73225 * 11 10 9 36 36 H 1.08001 * 120.09870 * 180.25029 * 12 11 10 37 37 H 0.96994 * 120.00051 * 185.02885 * 18 17 15 38 38 H 1.09001 * 109.54064 * 302.94730 * 23 2 1 39 39 H 1.08993 * 109.54134 * 63.21256 * 23 2 1 40 40 H 1.09000 * 109.52385 * 297.07493 * 24 23 2 41 41 H 1.09000 * 109.52003 * 176.88978 * 24 23 2 42 42 H 1.08997 * 109.47731 * 182.40708 * 25 24 23 43 43 H 1.08996 * 109.48848 * 62.38109 * 25 24 23 44 44 H 1.08999 * 109.47687 * 178.86012 * 27 26 25 45 45 H 1.08997 * 109.48500 * 58.82123 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3807 0.0000 4 6 1.6736 2.2184 0.9976 5 8 1.0344 1.8035 1.9461 6 6 2.0682 3.6320 0.9397 7 6 1.6636 4.6005 1.8064 8 6 2.2661 5.8187 1.4050 9 6 2.2188 7.1252 1.9061 10 6 2.9303 8.1152 1.2903 11 6 3.6937 7.8406 0.1634 12 6 3.7564 6.5622 -0.3482 13 6 3.0447 5.5364 0.2648 14 7 2.9093 4.1913 -0.0038 15 6 3.5087 3.5199 -1.0352 16 1 3.9981 2.5748 -0.8523 17 6 3.4875 4.0549 -2.3182 18 7 2.8299 5.1669 -2.5552 19 14 4.3943 3.1923 -3.7049 20 1 4.9501 1.9075 -3.2091 21 1 3.4527 2.9262 -4.8219 22 1 5.5012 4.0575 -4.1861 23 6 2.0432 -0.7251 -1.2480 24 6 3.5729 -0.7855 -1.1970 25 6 4.0056 -1.4794 0.0973 26 8 3.4695 -0.7724 1.2174 27 6 2.0416 -0.7243 1.2480 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5927 1.6921 -0.7179 32 1 1.0025 4.4647 2.6496 33 1 1.6246 7.3489 2.7798 34 1 2.8956 9.1215 1.6810 35 1 4.2472 8.6356 -0.3144 36 1 4.3561 6.3577 -1.2228 37 1 2.7537 5.5012 -3.4626 38 1 1.6390 -1.7370 -1.2738 39 1 1.7292 -0.1827 -2.1397 40 1 3.9785 0.2260 -1.2211 41 1 3.9440 -1.3482 -2.0536 42 1 5.0938 -1.4871 0.1593 43 1 3.6340 -2.5040 0.1024 44 1 1.7150 -0.1880 2.1390 45 1 1.6440 -1.7390 1.2680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611334902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:06 Heat of formation + Delta-G solvation = -26.203470 kcal Electronic energy + Delta-G solvation = -29466.682683 eV Core-core repulsion = 25642.286123 eV Total energy + Delta-G solvation = -3824.396561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64365 -39.84410 -37.84075 -35.90890 -35.04810 -33.62264 -32.31553 -31.17943 -30.65816 -28.87256 -27.83412 -26.78186 -25.10109 -24.94847 -23.39758 -22.02548 -20.99037 -20.37153 -19.32659 -18.97943 -18.17665 -16.53279 -16.35470 -15.81890 -15.63068 -15.07535 -14.87997 -14.72919 -14.56400 -14.14583 -14.05795 -13.66472 -13.16397 -13.03462 -12.88332 -12.76504 -12.56464 -12.55506 -12.19655 -11.92581 -11.81573 -11.65050 -11.62963 -11.51261 -11.20843 -11.07549 -10.74499 -10.64438 -10.60865 -10.35407 -10.17298 -9.75462 -9.46312 -9.32519 -9.08628 -8.61153 -8.34111 -7.17068 -6.84251 -6.57585 -4.73123 1.87997 2.74723 2.88150 2.91598 2.93255 3.18250 3.64872 3.77044 4.12020 4.26638 4.54745 4.64699 4.72244 4.85875 4.96585 5.02346 5.09757 5.33871 5.43441 5.54626 5.62660 5.70521 5.77021 5.84762 5.91537 5.92936 5.98508 5.98944 6.11316 6.17653 6.28993 6.31525 6.45618 6.50817 6.60860 6.72572 6.82634 6.94496 7.10304 7.13368 7.15382 7.41139 7.49905 7.60199 7.67256 7.93719 7.97156 8.30395 8.31698 8.68205 9.02710 9.27891 10.11412 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.005525 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.403110 B = 5066.335202 C = 6551.885051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.710 5.710 4 C 0.603 3.397 5 O -0.559 6.559 6 C -0.015 4.015 7 C -0.165 4.165 8 C -0.135 4.135 9 C -0.087 4.087 10 C -0.161 4.161 11 C -0.148 4.148 12 C -0.053 4.053 13 C 0.109 3.891 14 N -0.263 5.263 15 C -0.373 4.373 16 H 0.106 0.894 17 C 0.060 3.940 18 N -0.818 5.818 19 Si 0.921 3.079 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.124 4.124 24 C -0.162 4.162 25 C 0.059 3.941 26 O -0.373 6.373 27 C 0.051 3.949 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.416 0.584 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.282 0.718 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.118 0.882 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -8.255 -1.075 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.054 3.946 3 N -0.370 5.370 4 C 0.392 3.608 5 O -0.439 6.439 6 C -0.129 4.129 7 C -0.193 4.193 8 C -0.139 4.139 9 C -0.106 4.106 10 C -0.180 4.180 11 C -0.168 4.168 12 C -0.072 4.072 13 C -0.006 4.006 14 N 0.073 4.927 15 C -0.500 4.500 16 H 0.123 0.877 17 C -0.154 4.154 18 N -0.446 5.446 19 Si 0.745 3.255 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.162 4.162 24 C -0.200 4.200 25 C -0.018 4.018 26 O -0.291 6.291 27 C -0.027 4.027 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.262 0.738 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.136 0.864 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.336 -8.547 -0.780 8.590 hybrid contribution 0.376 -0.210 -1.600 1.657 sum 0.713 -8.757 -2.381 9.103 Atomic orbital electron populations 1.22144 0.94014 1.01844 1.04028 1.20868 0.94561 0.83408 0.95743 1.46622 1.52861 1.09730 1.27789 1.17190 0.78180 0.83955 0.81438 1.90620 1.42388 1.77034 1.33835 1.20159 1.01720 0.92937 0.98133 1.20385 1.06173 0.90622 1.02105 1.18043 1.03754 0.93698 0.98433 1.20051 0.99805 0.91424 0.99281 1.20263 1.01478 0.97886 0.98364 1.20570 1.02510 0.95586 0.98172 1.20068 0.98685 0.90559 0.97918 1.18269 1.01008 0.85734 0.95560 1.39898 1.29266 1.05078 1.18487 1.19545 1.37142 1.07109 0.86251 0.87713 1.25704 0.95257 0.95466 0.99018 1.69926 1.34038 1.17925 1.22749 0.85944 0.79528 0.79984 0.80038 1.18311 1.19727 1.19440 1.21867 0.95793 1.00800 0.97694 1.22258 0.96175 1.02912 0.98618 1.22549 0.99016 0.94153 0.86062 1.88013 1.20369 1.76128 1.44551 1.23159 0.80783 0.98822 0.99922 0.92226 0.92294 0.90001 0.73843 0.85048 0.87809 0.87980 0.87763 0.86724 0.90666 0.90530 0.90630 0.90419 0.90808 0.89186 0.93608 0.86399 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.40 37.16 0.31 -2.09 16 2 C 0.14 2.22 0.68 -131.67 -0.09 2.13 16 3 N -0.71 -13.78 4.69 -48.70 -0.23 -14.01 16 4 C 0.60 13.44 7.17 -12.76 -0.09 13.35 16 5 O -0.56 -12.69 13.08 5.22 0.07 -12.62 16 6 C -0.01 -0.36 6.76 -82.25 -0.56 -0.92 16 7 C -0.16 -3.90 10.55 -39.02 -0.41 -4.31 16 8 C -0.13 -3.20 6.16 -106.89 -0.66 -3.86 16 9 C -0.09 -1.80 10.06 -39.52 -0.40 -2.20 16 10 C -0.16 -3.13 9.97 -39.95 -0.40 -3.53 16 11 C -0.15 -3.03 10.02 -39.50 -0.40 -3.42 16 12 C -0.05 -1.23 8.56 -39.41 -0.34 -1.57 16 13 C 0.11 2.73 6.02 -83.84 -0.51 2.23 16 14 N -0.26 -6.57 2.80 -56.08 -0.16 -6.73 16 15 C -0.37 -8.82 7.62 -15.00 -0.11 -8.94 16 16 H 0.11 2.37 6.42 -52.49 -0.34 2.03 16 17 C 0.06 1.36 4.92 -17.47 -0.09 1.27 16 18 N -0.82 -19.95 10.67 55.50 0.59 -19.36 16 19 Si 0.92 17.17 29.56 -169.99 -5.02 12.15 16 20 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 23 C -0.12 -1.60 4.86 -26.55 -0.13 -1.73 16 24 C -0.16 -2.09 5.95 -26.59 -0.16 -2.25 16 25 C 0.06 0.76 6.84 37.21 0.25 1.01 16 26 O -0.37 -6.20 10.67 -35.23 -0.38 -6.58 16 27 C 0.05 0.80 5.42 37.21 0.20 1.00 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.39 6.26 -51.93 -0.32 1.07 16 31 H 0.42 8.31 3.39 -40.82 -0.14 8.17 16 32 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 33 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.11 2.73 6.76 -52.49 -0.35 2.38 16 37 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.19 7.00 -51.93 -0.36 0.83 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.12 2.14 6.04 -51.93 -0.31 1.83 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -27.87 354.31 -9.39 -37.26 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -6.04 Total: 18.37 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -3.56 Total: -13.82 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.21 Total: -40.10 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.31 Total: -19.20 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.02 Total: 12.15 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.87 -9.39 -37.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611334902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.056 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds