Wall clock time and date at job start Tue Mar 31 2020 15:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.52237 * 2 1 4 4 C 1.34782 * 119.99910 * 58.72391 * 3 2 1 5 5 O 1.21670 * 119.99653 * 5.22399 * 4 3 2 6 6 C 1.46885 * 120.00064 * 185.23146 * 4 3 2 7 7 C 1.36118 * 125.43833 * 172.69783 * 6 4 3 8 8 C 1.41705 * 107.75098 * 179.97438 * 7 6 4 9 9 C 1.40014 * 133.34773 * 180.02562 * 8 7 6 10 10 C 1.36580 * 119.82919 * 179.75797 * 9 8 7 11 11 C 1.38856 * 120.59700 * 0.51447 * 10 9 8 12 12 C 1.37840 * 120.63571 * 359.46221 * 11 10 9 13 13 C 1.39091 * 119.81165 * 0.27481 * 12 11 10 14 14 N 1.37834 * 133.16316 * 179.97438 * 13 12 11 15 15 C 1.36892 * 125.62452 * 359.97438 * 14 13 12 16 16 H 1.07995 * 120.00255 * 133.58798 * 15 14 13 17 17 C 1.39015 * 119.99628 * 313.59002 * 15 14 13 18 18 N 1.31346 * 120.00085 * 356.25258 * 17 15 14 19 19 Si 1.86797 * 120.00078 * 176.25083 * 17 15 14 20 20 H 1.48505 * 109.46902 * 4.98874 * 19 17 15 21 21 H 1.48497 * 109.47204 * 124.98960 * 19 17 15 22 22 H 1.48501 * 109.47191 * 244.99098 * 19 17 15 23 23 C 1.53184 * 109.57350 * 239.84419 * 2 1 3 24 24 C 1.53174 * 109.03256 * 183.08378 * 23 2 1 25 25 C 1.53097 * 109.16559 * 56.98041 * 24 23 2 26 26 O 1.42899 * 109.41390 * 302.38848 * 25 24 23 27 27 C 1.42904 * 114.09655 * 61.16207 * 26 25 24 28 28 H 1.08997 * 109.47011 * 59.99861 * 1 2 3 29 29 H 1.09005 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47189 * 299.99803 * 1 2 3 31 31 H 0.96996 * 120.00382 * 238.72233 * 3 2 1 32 32 H 1.08002 * 126.12328 * 0.02562 * 7 6 4 33 33 H 1.08007 * 120.08883 * 0.02562 * 9 8 7 34 34 H 1.08006 * 119.70422 * 180.25348 * 10 9 8 35 35 H 1.08005 * 119.68231 * 179.73225 * 11 10 9 36 36 H 1.08001 * 120.09870 * 180.25029 * 12 11 10 37 37 H 0.96994 * 120.00051 * 185.02885 * 18 17 15 38 38 H 1.09001 * 109.54064 * 302.94730 * 23 2 1 39 39 H 1.08993 * 109.54134 * 63.21256 * 23 2 1 40 40 H 1.09000 * 109.52385 * 297.07493 * 24 23 2 41 41 H 1.09000 * 109.52003 * 176.88978 * 24 23 2 42 42 H 1.08997 * 109.47731 * 182.40708 * 25 24 23 43 43 H 1.08996 * 109.48848 * 62.38109 * 25 24 23 44 44 H 1.08999 * 109.47687 * 178.86012 * 27 26 25 45 45 H 1.08997 * 109.48500 * 58.82123 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3807 0.0000 4 6 1.6736 2.2184 0.9976 5 8 1.0344 1.8035 1.9461 6 6 2.0682 3.6320 0.9397 7 6 1.6636 4.6005 1.8064 8 6 2.2661 5.8187 1.4050 9 6 2.2188 7.1252 1.9061 10 6 2.9303 8.1152 1.2903 11 6 3.6937 7.8406 0.1634 12 6 3.7564 6.5622 -0.3482 13 6 3.0447 5.5364 0.2648 14 7 2.9093 4.1913 -0.0038 15 6 3.5087 3.5199 -1.0352 16 1 3.9981 2.5748 -0.8523 17 6 3.4875 4.0549 -2.3182 18 7 2.8299 5.1669 -2.5552 19 14 4.3943 3.1923 -3.7049 20 1 4.9501 1.9075 -3.2091 21 1 3.4527 2.9262 -4.8219 22 1 5.5012 4.0575 -4.1861 23 6 2.0432 -0.7251 -1.2480 24 6 3.5729 -0.7855 -1.1970 25 6 4.0056 -1.4794 0.0973 26 8 3.4695 -0.7724 1.2174 27 6 2.0416 -0.7243 1.2480 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5927 1.6921 -0.7179 32 1 1.0025 4.4647 2.6496 33 1 1.6246 7.3489 2.7798 34 1 2.8956 9.1215 1.6810 35 1 4.2472 8.6356 -0.3144 36 1 4.3561 6.3577 -1.2228 37 1 2.7537 5.5012 -3.4626 38 1 1.6390 -1.7370 -1.2738 39 1 1.7292 -0.1827 -2.1397 40 1 3.9785 0.2260 -1.2211 41 1 3.9440 -1.3482 -2.0536 42 1 5.0938 -1.4871 0.1593 43 1 3.6340 -2.5040 0.1024 44 1 1.7150 -0.1880 2.1390 45 1 1.6440 -1.7390 1.2680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611334902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:05 Heat of formation + Delta-G solvation = -41.354254 kcal Electronic energy + Delta-G solvation = -29467.339671 eV Core-core repulsion = 25642.286123 eV Total energy + Delta-G solvation = -3825.053548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29527 -41.25605 -39.32419 -37.59372 -36.40862 -35.35494 -33.52206 -32.61752 -32.33691 -30.56823 -29.53153 -27.90867 -26.83747 -26.11782 -25.00097 -23.19325 -22.70335 -21.93760 -21.00518 -20.40058 -19.85926 -18.15369 -17.63022 -17.34361 -16.99009 -16.49939 -16.40544 -16.21824 -16.10558 -15.60668 -15.43000 -14.98801 -14.78180 -14.69554 -14.57517 -14.25110 -13.90441 -13.64704 -13.59238 -13.54833 -13.30646 -13.16624 -12.90650 -12.84629 -12.74830 -12.32805 -12.18359 -12.10368 -11.83837 -11.77563 -11.45344 -11.44892 -11.04719 -10.70359 -10.63835 -10.37367 -9.80021 -8.91965 -8.60069 -8.32478 -6.54841 0.14718 1.11121 1.34467 1.36136 1.44650 1.49440 2.06902 2.30278 2.52812 2.80620 2.88721 3.03339 3.36331 3.57626 3.81233 3.84636 3.96625 4.08106 4.24119 4.30835 4.42685 4.43108 4.47636 4.56283 4.68007 4.70790 4.74009 4.75849 4.82930 4.86177 4.90072 4.97162 5.01844 5.05032 5.13799 5.21387 5.24336 5.32523 5.36959 5.45537 5.66573 5.76528 5.91039 5.96822 6.21387 6.26028 6.31186 6.56684 6.66597 6.92281 7.35522 7.49951 8.38936 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.005525 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.403110 B = 5066.335202 C = 6551.885051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 N -0.704 5.704 4 C 0.595 3.405 5 O -0.572 6.572 6 C -0.043 4.043 7 C -0.181 4.181 8 C -0.157 4.157 9 C -0.093 4.093 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.080 4.080 13 C 0.077 3.923 14 N -0.275 5.275 15 C -0.389 4.389 16 H 0.108 0.892 17 C 0.024 3.976 18 N -0.852 5.852 19 Si 0.986 3.014 20 H -0.242 1.242 21 H -0.267 1.267 22 H -0.271 1.271 23 C -0.119 4.119 24 C -0.162 4.162 25 C 0.053 3.947 26 O -0.404 6.404 27 C 0.054 3.946 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.412 0.588 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.285 0.715 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.968 -9.299 -2.172 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 N -0.362 5.362 4 C 0.384 3.616 5 O -0.454 6.454 6 C -0.158 4.158 7 C -0.209 4.209 8 C -0.161 4.161 9 C -0.112 4.112 10 C -0.172 4.172 11 C -0.158 4.158 12 C -0.100 4.100 13 C -0.037 4.037 14 N 0.060 4.940 15 C -0.515 4.515 16 H 0.125 0.875 17 C -0.186 4.186 18 N -0.481 5.481 19 Si 0.806 3.194 20 H -0.165 1.165 21 H -0.191 1.191 22 H -0.196 1.196 23 C -0.157 4.157 24 C -0.199 4.199 25 C -0.023 4.023 26 O -0.323 6.323 27 C -0.023 4.023 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.257 0.743 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.780 -9.613 -1.872 9.824 hybrid contribution 0.255 0.192 -1.204 1.245 sum 1.034 -9.421 -3.076 9.964 Atomic orbital electron populations 1.22092 0.93361 1.03726 1.02287 1.21265 0.95162 0.81567 0.97626 1.46648 1.51960 1.11085 1.26459 1.17140 0.78502 0.83816 0.82129 1.90598 1.43197 1.77183 1.34435 1.20662 1.02241 0.94327 0.98544 1.20614 1.06703 0.91037 1.02536 1.18436 1.04035 0.95048 0.98627 1.20462 1.00143 0.90388 1.00172 1.20729 0.99663 0.99522 0.97281 1.21013 1.01716 0.95058 0.98026 1.20135 0.99819 0.91751 0.98334 1.18749 1.02135 0.86238 0.96612 1.40120 1.29566 1.05402 1.18904 1.19832 1.37545 1.07477 0.86687 0.87527 1.26564 0.95408 0.95804 1.00839 1.70037 1.35372 1.19340 1.23314 0.84990 0.78163 0.79518 0.76753 1.16495 1.19127 1.19584 1.21913 0.95884 1.02188 0.95695 1.22274 0.96073 1.01641 0.99946 1.22796 0.99563 0.95182 0.84725 1.87968 1.20752 1.77181 1.46442 1.23044 0.80791 1.00096 0.98363 0.92753 0.88557 0.92876 0.74280 0.84207 0.84965 0.83631 0.84595 0.88206 0.90510 0.86895 0.90801 0.93549 0.87746 0.88402 0.90575 0.89741 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 8.40 71.98 0.60 -3.91 16 2 C 0.13 3.98 0.68 3.70 0.00 3.98 16 3 N -0.70 -28.12 4.69 -426.21 -2.00 -30.13 16 4 C 0.60 27.94 7.17 86.51 0.62 28.56 16 5 O -0.57 -27.41 13.08 -4.25 -0.06 -27.46 16 6 C -0.04 -2.21 6.76 39.91 0.27 -1.94 16 7 C -0.18 -8.98 10.55 22.63 0.24 -8.74 16 8 C -0.16 -7.66 6.16 -21.34 -0.13 -7.79 16 9 C -0.09 -3.77 10.06 22.31 0.22 -3.54 16 10 C -0.15 -5.59 9.97 22.03 0.22 -5.38 16 11 C -0.14 -5.47 10.02 22.32 0.22 -5.24 16 12 C -0.08 -3.85 8.56 22.38 0.19 -3.66 16 13 C 0.08 4.01 6.02 39.06 0.24 4.24 16 14 N -0.28 -14.43 2.80 -331.35 -0.93 -15.35 16 15 C -0.39 -19.10 7.62 84.09 0.64 -18.46 16 16 H 0.11 5.03 6.42 -2.91 -0.02 5.01 16 17 C 0.02 1.14 4.92 84.95 0.42 1.55 16 18 N -0.85 -42.78 10.67 21.67 0.23 -42.55 16 19 Si 0.99 35.13 29.56 68.60 2.03 37.16 16 20 H -0.24 -7.86 7.11 99.48 0.71 -7.15 16 21 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 22 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 23 C -0.12 -2.77 4.86 30.71 0.15 -2.62 16 24 C -0.16 -3.79 5.95 30.68 0.18 -3.60 16 25 C 0.05 1.24 6.84 72.01 0.49 1.74 16 26 O -0.40 -13.22 10.67 -148.98 -1.59 -14.81 16 27 C 0.05 1.67 5.42 72.01 0.39 2.06 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.05 1.84 6.26 -2.39 -0.01 1.83 16 31 H 0.41 17.01 3.39 -92.71 -0.31 16.69 16 32 H 0.14 6.41 8.06 -2.91 -0.02 6.39 16 33 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.10 4.95 6.76 -2.91 -0.02 4.93 16 37 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 38 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.38 7.00 -2.39 -0.02 1.36 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 42 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 3.17 6.04 -2.39 -0.01 3.15 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -64.88 354.31 3.36 -61.52 By element: Atomic # 1 Polarization: 53.66 SS G_CDS: 0.70 Total: 54.36 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 4.97 Total: -22.74 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.70 Total: -88.03 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.65 Total: -42.27 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Total: -64.88 3.36 -61.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611334902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.165 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds