Wall clock time and date at job start Tue Mar 31 2020 15:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.87227 * 2 1 4 4 O 1.42904 * 109.46939 * 58.98726 * 3 2 1 5 5 C 1.54318 * 110.01404 * 121.09880 * 2 1 3 6 6 C 1.55276 * 103.00643 * 97.37611 * 5 2 1 7 7 C 1.54907 * 101.53028 * 35.36163 * 6 5 2 8 8 N 1.47025 * 109.88234 * 238.98839 * 2 1 3 9 9 C 1.34779 * 125.64621 * 59.33945 * 8 2 1 10 10 O 1.21667 * 120.00259 * 354.71101 * 9 8 2 11 11 C 1.46887 * 119.99356 * 174.70246 * 9 8 2 12 12 C 1.36119 * 125.44068 * 353.74083 * 11 9 8 13 13 C 1.41709 * 107.74768 * 179.84725 * 12 11 9 14 14 C 1.40023 * 133.34754 * 180.09517 * 13 12 11 15 15 C 1.36575 * 119.82692 * 180.34885 * 14 13 12 16 16 C 1.38855 * 120.60351 * 359.97438 * 15 14 13 17 17 C 1.37845 * 120.63066 * 359.97438 * 16 15 14 18 18 C 1.39090 * 119.81477 * 0.04042 * 17 16 15 19 19 N 1.37832 * 133.16040 * 179.97438 * 18 17 16 20 20 C 1.36894 * 125.62333 * 0.02562 * 19 18 17 21 21 H 1.08004 * 119.99651 * 135.41973 * 20 19 18 22 22 C 1.39002 * 120.00026 * 315.42376 * 20 19 18 23 23 N 1.31348 * 120.00238 * 167.83846 * 22 20 19 24 24 Si 1.86802 * 119.99866 * 347.84623 * 22 20 19 25 25 H 1.48497 * 109.47328 * 93.73494 * 24 22 20 26 26 H 1.48504 * 109.46940 * 213.73400 * 24 22 20 27 27 H 1.48499 * 109.47289 * 333.72877 * 24 22 20 28 28 H 1.09007 * 109.46988 * 181.01574 * 1 2 3 29 29 H 1.09004 * 109.47153 * 301.01050 * 1 2 3 30 30 H 1.08994 * 109.47642 * 61.01828 * 1 2 3 31 31 H 1.08996 * 109.47575 * 178.98612 * 3 2 1 32 32 H 1.09002 * 109.47448 * 298.99107 * 3 2 1 33 33 H 0.96701 * 113.99911 * 180.02562 * 4 3 2 34 34 H 1.09000 * 110.72456 * 215.65896 * 5 2 1 35 35 H 1.08999 * 110.72499 * 338.76123 * 5 2 1 36 36 H 1.08995 * 110.96233 * 277.33742 * 6 5 2 37 37 H 1.09006 * 111.10407 * 153.45015 * 6 5 2 38 38 H 1.08998 * 110.37113 * 204.23133 * 7 6 5 39 39 H 1.09007 * 110.36745 * 82.01736 * 7 6 5 40 40 H 1.07998 * 126.12668 * 359.97438 * 12 11 9 41 41 H 1.07998 * 120.08334 * 0.32243 * 14 13 12 42 42 H 1.07998 * 119.69744 * 180.02562 * 15 14 13 43 43 H 1.07997 * 119.68752 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.08913 * 179.97438 * 17 16 15 45 45 H 0.97000 * 119.99971 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 8 1.5591 2.1228 1.1547 5 6 2.0581 -0.7489 1.2416 6 6 2.3602 -2.1690 0.6909 7 6 2.8599 -1.8465 -0.7395 8 7 2.0300 -0.7123 -1.1850 9 6 1.7719 -0.3833 -2.4663 10 8 0.9937 0.5174 -2.7181 11 6 2.4304 -1.1120 -3.5585 12 6 3.4044 -2.0506 -3.4065 13 6 3.7663 -2.5105 -4.6971 14 6 4.6924 -3.4551 -5.1562 15 6 4.8231 -3.6825 -6.4965 16 6 4.0448 -2.9854 -7.4110 17 6 3.1257 -2.0514 -6.9832 18 6 2.9748 -1.8023 -5.6231 19 7 2.1626 -0.9511 -4.9049 20 6 1.2431 -0.0880 -5.4374 21 1 0.2588 -0.0102 -4.9997 22 6 1.5763 0.6882 -6.5413 23 7 0.6389 1.3326 -7.1981 24 14 3.3571 0.8147 -7.0910 25 1 3.6257 -0.2042 -8.1374 26 1 3.6096 2.1699 -7.6432 27 1 4.2517 0.5790 -5.9294 28 1 -0.3633 -1.0276 0.0182 29 1 -0.3634 0.5295 0.8808 30 1 -0.3634 0.4979 -0.8989 31 1 3.1398 1.4314 0.0182 32 1 1.7052 1.9500 -0.8989 33 1 1.8495 3.0429 1.2200 34 1 2.9684 -0.2808 1.6162 35 1 1.2973 -0.7879 2.0212 36 1 1.4556 -2.7762 0.6610 37 1 3.1388 -2.6592 1.2754 38 1 2.7129 -2.7047 -1.3952 39 1 3.9118 -1.5616 -0.7187 40 1 3.8246 -2.3863 -2.4699 41 1 5.3020 -4.0021 -4.4522 42 1 5.5377 -4.4119 -6.8483 43 1 4.1601 -3.1772 -8.4675 44 1 2.5252 -1.5139 -7.7021 45 1 0.8715 1.8746 -7.9682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612771971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:08 Heat of formation + Delta-G solvation = 1.569354 kcal Electronic energy + Delta-G solvation = -29174.284761 eV Core-core repulsion = 25351.092520 eV Total energy + Delta-G solvation = -3823.192241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97134 -39.90861 -37.37570 -36.25918 -35.99322 -33.67794 -32.13743 -31.28915 -31.10331 -29.27164 -28.13905 -26.50416 -25.47074 -24.84219 -23.56092 -22.05944 -21.34060 -20.25544 -19.92325 -18.42250 -17.88624 -17.34598 -16.36645 -15.90982 -15.72103 -15.57143 -15.02639 -14.68150 -14.42311 -14.34238 -13.80056 -13.62089 -13.46708 -13.21865 -13.14479 -12.97281 -12.73149 -12.53260 -12.26070 -12.17860 -12.11258 -11.72756 -11.66823 -11.39118 -11.11788 -10.89685 -10.68873 -10.66084 -10.55319 -10.46584 -10.20137 -9.92533 -9.80604 -9.44272 -9.11566 -8.64118 -8.39075 -7.36882 -6.97777 -6.79856 -4.47587 1.55864 2.46153 2.80157 3.00168 3.04570 3.16958 3.25070 3.93282 4.02906 4.19047 4.50186 4.56438 4.57137 4.61476 4.81258 4.93040 5.16151 5.23553 5.31497 5.32782 5.55791 5.58343 5.68148 5.69750 5.74047 5.82565 5.84754 5.88752 5.95803 6.01003 6.07216 6.12074 6.19045 6.20660 6.38410 6.49142 6.59515 6.64859 6.78297 6.80459 7.18437 7.27790 7.31214 7.58035 7.59894 7.62243 7.85863 7.90588 8.26618 8.70833 8.82982 9.06681 10.25043 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.004948 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.792114 B = 5657.556311 C = 7044.892707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.174 3.826 3 C 0.070 3.930 4 O -0.569 6.569 5 C -0.113 4.113 6 C -0.137 4.137 7 C 0.092 3.908 8 N -0.609 5.609 9 C 0.600 3.400 10 O -0.512 6.512 11 C -0.009 4.009 12 C -0.213 4.213 13 C -0.119 4.119 14 C -0.082 4.082 15 C -0.156 4.156 16 C -0.135 4.135 17 C -0.102 4.102 18 C 0.050 3.950 19 N -0.251 5.251 20 C -0.326 4.326 21 H 0.128 0.872 22 C 0.078 3.922 23 N -0.831 5.831 24 Si 0.872 3.128 25 H -0.243 1.243 26 H -0.284 1.284 27 H -0.256 1.256 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.378 0.622 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.146 0.854 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 -5.356 12.453 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.089 3.911 3 C -0.009 4.009 4 O -0.374 6.374 5 C -0.151 4.151 6 C -0.175 4.175 7 C -0.031 4.031 8 N -0.347 5.347 9 C 0.391 3.609 10 O -0.387 6.387 11 C -0.126 4.126 12 C -0.239 4.239 13 C -0.124 4.124 14 C -0.101 4.101 15 C -0.175 4.175 16 C -0.156 4.156 17 C -0.121 4.121 18 C -0.064 4.064 19 N 0.088 4.912 20 C -0.454 4.454 21 H 0.145 0.855 22 C -0.135 4.135 23 N -0.461 5.461 24 Si 0.697 3.303 25 H -0.168 1.168 26 H -0.211 1.211 27 H -0.179 1.179 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.225 0.775 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.163 0.837 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.509 -4.973 12.019 14.126 hybrid contribution 1.082 0.864 -0.606 1.511 sum 6.591 -4.109 11.413 13.805 Atomic orbital electron populations 1.22083 0.93516 1.01860 1.03533 1.20695 0.95145 0.90431 0.84851 1.22500 0.96750 0.93084 0.88542 1.86374 1.76736 1.28802 1.45446 1.22637 1.01691 0.94782 0.96031 1.22880 1.01969 0.97022 0.95588 1.22750 0.94723 0.90155 0.95445 1.48150 1.52166 1.30451 1.03921 1.16875 0.80924 0.82841 0.80246 1.90826 1.34506 1.30760 1.82633 1.19649 1.02590 1.05128 0.85234 1.21020 1.02542 1.03645 0.96688 1.17971 1.00683 1.00772 0.92960 1.20130 0.97613 0.97281 0.95052 1.20354 1.01854 1.02112 0.93174 1.20547 0.98101 0.98284 0.98643 1.20288 0.99962 0.99245 0.92639 1.18394 0.99067 0.95735 0.93182 1.40210 1.24305 1.24304 1.02414 1.19537 0.95071 1.17915 1.12926 0.85490 1.25491 0.99226 0.93960 0.94783 1.69634 1.33587 1.26123 1.16722 0.87033 0.83699 0.78078 0.81539 1.16795 1.21071 1.17945 0.92846 0.91454 0.90658 0.93808 0.91970 0.77526 0.90739 0.89945 0.90568 0.89925 0.88733 0.91283 0.83694 0.87240 0.87312 0.86983 0.86179 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.24 37.16 0.31 -2.02 16 2 C 0.17 2.52 0.65 -130.84 -0.09 2.43 16 3 C 0.07 1.01 5.84 37.16 0.22 1.23 16 4 O -0.57 -7.00 12.67 -35.23 -0.45 -7.45 16 5 C -0.11 -1.24 5.76 -24.83 -0.14 -1.38 16 6 C -0.14 -1.33 7.10 -24.52 -0.17 -1.51 16 7 C 0.09 1.16 5.07 -2.53 -0.01 1.14 16 8 N -0.61 -10.07 2.82 -157.25 -0.44 -10.51 16 9 C 0.60 12.97 7.37 -12.76 -0.09 12.88 16 10 O -0.51 -12.78 12.79 5.22 0.07 -12.71 16 11 C -0.01 -0.21 6.73 -82.25 -0.55 -0.76 16 12 C -0.21 -4.22 9.12 -39.02 -0.36 -4.57 16 13 C -0.12 -2.53 6.16 -106.89 -0.66 -3.19 16 14 C -0.08 -1.47 10.06 -39.51 -0.40 -1.87 16 15 C -0.16 -2.69 9.97 -39.95 -0.40 -3.09 16 16 C -0.14 -2.57 10.02 -39.50 -0.40 -2.96 16 17 C -0.10 -2.29 6.59 -39.41 -0.26 -2.55 16 18 C 0.05 1.19 5.04 -83.84 -0.42 0.77 16 19 N -0.25 -6.47 2.43 -56.08 -0.14 -6.60 16 20 C -0.33 -9.22 9.05 -15.01 -0.14 -9.35 16 21 H 0.13 3.92 7.48 -52.48 -0.39 3.53 16 22 C 0.08 2.15 5.14 -17.48 -0.09 2.06 16 23 N -0.83 -23.31 13.95 55.50 0.77 -22.53 16 24 Si 0.87 21.25 23.82 -169.99 -4.05 17.21 16 25 H -0.24 -5.49 5.39 56.52 0.30 -5.19 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.26 -6.60 7.01 56.52 0.40 -6.21 16 28 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 30 H 0.07 1.40 6.53 -51.93 -0.34 1.06 16 31 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 33 H 0.38 3.05 9.12 45.56 0.42 3.46 16 34 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 35 H 0.08 0.84 7.83 -51.93 -0.41 0.43 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.22 5.83 -51.93 -0.30 0.91 16 39 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 40 H 0.15 2.27 4.54 -52.49 -0.24 2.03 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.12 2.79 5.57 -52.49 -0.29 2.50 16 45 H 0.29 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -32.33 348.09 -7.96 -40.29 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.32 Total: 9.82 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -3.65 Total: -12.75 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.19 Total: -39.65 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.38 Total: -20.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.05 Total: 17.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.33 -7.96 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612771971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.860 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds