Wall clock time and date at job start Tue Mar 31 2020 15:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.87227 * 2 1 4 4 O 1.42904 * 109.46939 * 58.98726 * 3 2 1 5 5 C 1.54318 * 110.01404 * 121.09880 * 2 1 3 6 6 C 1.55276 * 103.00643 * 97.37611 * 5 2 1 7 7 C 1.54907 * 101.53028 * 35.36163 * 6 5 2 8 8 N 1.47025 * 109.88234 * 238.98839 * 2 1 3 9 9 C 1.34779 * 125.64621 * 59.33945 * 8 2 1 10 10 O 1.21667 * 120.00259 * 354.71101 * 9 8 2 11 11 C 1.46887 * 119.99356 * 174.70246 * 9 8 2 12 12 C 1.36119 * 125.44068 * 353.74083 * 11 9 8 13 13 C 1.41709 * 107.74768 * 179.84725 * 12 11 9 14 14 C 1.40023 * 133.34754 * 180.09517 * 13 12 11 15 15 C 1.36575 * 119.82692 * 180.34885 * 14 13 12 16 16 C 1.38855 * 120.60351 * 359.97438 * 15 14 13 17 17 C 1.37845 * 120.63066 * 359.97438 * 16 15 14 18 18 C 1.39090 * 119.81477 * 0.04042 * 17 16 15 19 19 N 1.37832 * 133.16040 * 179.97438 * 18 17 16 20 20 C 1.36894 * 125.62333 * 0.02562 * 19 18 17 21 21 H 1.08004 * 119.99651 * 135.41973 * 20 19 18 22 22 C 1.39002 * 120.00026 * 315.42376 * 20 19 18 23 23 N 1.31348 * 120.00238 * 167.83846 * 22 20 19 24 24 Si 1.86802 * 119.99866 * 347.84623 * 22 20 19 25 25 H 1.48497 * 109.47328 * 93.73494 * 24 22 20 26 26 H 1.48504 * 109.46940 * 213.73400 * 24 22 20 27 27 H 1.48499 * 109.47289 * 333.72877 * 24 22 20 28 28 H 1.09007 * 109.46988 * 181.01574 * 1 2 3 29 29 H 1.09004 * 109.47153 * 301.01050 * 1 2 3 30 30 H 1.08994 * 109.47642 * 61.01828 * 1 2 3 31 31 H 1.08996 * 109.47575 * 178.98612 * 3 2 1 32 32 H 1.09002 * 109.47448 * 298.99107 * 3 2 1 33 33 H 0.96701 * 113.99911 * 180.02562 * 4 3 2 34 34 H 1.09000 * 110.72456 * 215.65896 * 5 2 1 35 35 H 1.08999 * 110.72499 * 338.76123 * 5 2 1 36 36 H 1.08995 * 110.96233 * 277.33742 * 6 5 2 37 37 H 1.09006 * 111.10407 * 153.45015 * 6 5 2 38 38 H 1.08998 * 110.37113 * 204.23133 * 7 6 5 39 39 H 1.09007 * 110.36745 * 82.01736 * 7 6 5 40 40 H 1.07998 * 126.12668 * 359.97438 * 12 11 9 41 41 H 1.07998 * 120.08334 * 0.32243 * 14 13 12 42 42 H 1.07998 * 119.69744 * 180.02562 * 15 14 13 43 43 H 1.07997 * 119.68752 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.08913 * 179.97438 * 17 16 15 45 45 H 0.97000 * 119.99971 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 8 1.5591 2.1228 1.1547 5 6 2.0581 -0.7489 1.2416 6 6 2.3602 -2.1690 0.6909 7 6 2.8599 -1.8465 -0.7395 8 7 2.0300 -0.7123 -1.1850 9 6 1.7719 -0.3833 -2.4663 10 8 0.9937 0.5174 -2.7181 11 6 2.4304 -1.1120 -3.5585 12 6 3.4044 -2.0506 -3.4065 13 6 3.7663 -2.5105 -4.6971 14 6 4.6924 -3.4551 -5.1562 15 6 4.8231 -3.6825 -6.4965 16 6 4.0448 -2.9854 -7.4110 17 6 3.1257 -2.0514 -6.9832 18 6 2.9748 -1.8023 -5.6231 19 7 2.1626 -0.9511 -4.9049 20 6 1.2431 -0.0880 -5.4374 21 1 0.2588 -0.0102 -4.9997 22 6 1.5763 0.6882 -6.5413 23 7 0.6389 1.3326 -7.1981 24 14 3.3571 0.8147 -7.0910 25 1 3.6257 -0.2042 -8.1374 26 1 3.6096 2.1699 -7.6432 27 1 4.2517 0.5790 -5.9294 28 1 -0.3633 -1.0276 0.0182 29 1 -0.3634 0.5295 0.8808 30 1 -0.3634 0.4979 -0.8989 31 1 3.1398 1.4314 0.0182 32 1 1.7052 1.9500 -0.8989 33 1 1.8495 3.0429 1.2200 34 1 2.9684 -0.2808 1.6162 35 1 1.2973 -0.7879 2.0212 36 1 1.4556 -2.7762 0.6610 37 1 3.1388 -2.6592 1.2754 38 1 2.7129 -2.7047 -1.3952 39 1 3.9118 -1.5616 -0.7187 40 1 3.8246 -2.3863 -2.4699 41 1 5.3020 -4.0021 -4.4522 42 1 5.5377 -4.4119 -6.8483 43 1 4.1601 -3.1772 -8.4675 44 1 2.5252 -1.5139 -7.7021 45 1 0.8715 1.8746 -7.9682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612771971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:07 Heat of formation + Delta-G solvation = -22.132359 kcal Electronic energy + Delta-G solvation = -29175.312544 eV Core-core repulsion = 25351.092520 eV Total energy + Delta-G solvation = -3824.220024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58434 -41.24627 -38.83918 -37.62117 -37.32880 -35.53028 -33.68593 -32.67339 -32.33599 -30.87854 -29.70690 -27.71482 -26.88114 -26.45216 -24.98817 -23.27382 -22.83704 -21.61636 -21.53329 -20.06898 -19.43618 -18.43191 -17.86175 -17.41930 -17.35556 -16.90966 -16.52069 -16.09408 -15.97280 -15.76551 -15.28737 -15.12116 -14.91400 -14.84730 -14.57362 -14.44291 -14.18141 -13.79478 -13.61755 -13.51578 -13.38996 -13.19838 -12.87293 -12.85126 -12.74356 -12.51549 -12.32003 -12.02721 -11.79065 -11.65353 -11.49961 -11.46884 -11.26937 -11.05044 -10.74357 -10.38261 -9.75362 -9.02875 -8.82864 -8.61910 -6.55447 -0.02475 0.90213 1.05948 1.10999 1.23886 1.33933 1.65044 1.96627 2.33011 2.63302 2.77884 3.14416 3.29342 3.52697 3.62238 3.83579 3.92494 4.03730 4.11515 4.22248 4.29124 4.36913 4.39515 4.47731 4.54743 4.58649 4.64396 4.67832 4.75313 4.82086 4.90075 4.96486 4.98998 5.04602 5.08316 5.17554 5.24407 5.26934 5.36763 5.39831 5.57403 5.67519 5.77987 5.81582 6.03727 6.11671 6.40911 6.45675 6.74926 6.79314 7.13626 7.25824 8.28820 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.004948 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.792114 B = 5657.556311 C = 7044.892707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.161 3.839 3 C 0.079 3.921 4 O -0.569 6.569 5 C -0.103 4.103 6 C -0.121 4.121 7 C 0.076 3.924 8 N -0.601 5.601 9 C 0.590 3.410 10 O -0.567 6.567 11 C -0.041 4.041 12 C -0.174 4.174 13 C -0.141 4.141 14 C -0.065 4.065 15 C -0.154 4.154 16 C -0.108 4.108 17 C -0.156 4.156 18 C 0.034 3.966 19 N -0.293 5.293 20 C -0.341 4.341 21 H 0.072 0.928 22 C 0.037 3.963 23 N -0.884 5.884 24 Si 0.932 3.068 25 H -0.213 1.213 26 H -0.281 1.281 27 H -0.278 1.278 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.195 0.805 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.097 0.903 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 -9.351 14.822 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.076 3.924 3 C 0.000 4.000 4 O -0.376 6.376 5 C -0.140 4.140 6 C -0.159 4.159 7 C -0.045 4.045 8 N -0.336 5.336 9 C 0.381 3.619 10 O -0.446 6.446 11 C -0.155 4.155 12 C -0.200 4.200 13 C -0.146 4.146 14 C -0.083 4.083 15 C -0.172 4.172 16 C -0.128 4.128 17 C -0.176 4.176 18 C -0.079 4.079 19 N 0.042 4.958 20 C -0.469 4.469 21 H 0.089 0.911 22 C -0.170 4.170 23 N -0.517 5.517 24 Si 0.754 3.246 25 H -0.136 1.136 26 H -0.207 1.207 27 H -0.203 1.203 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.247 0.753 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.211 0.789 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.162 0.838 44 H 0.116 0.884 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.436 -8.996 14.440 19.959 hybrid contribution -0.329 1.842 -1.142 2.192 sum 10.107 -7.154 13.298 18.171 Atomic orbital electron populations 1.22002 0.94815 1.01752 1.01791 1.21028 0.94400 0.91098 0.85833 1.22265 0.97296 0.93007 0.87476 1.86326 1.76942 1.30354 1.43933 1.22631 1.02570 0.94936 0.93912 1.22892 1.03215 0.96308 0.93497 1.23145 0.95433 0.88528 0.97354 1.48193 1.51472 1.31284 1.02658 1.17055 0.80631 0.82341 0.81916 1.90804 1.36866 1.33077 1.83834 1.20273 1.04202 1.06168 0.84830 1.21633 0.99688 1.00362 0.98320 1.18506 1.01532 1.01836 0.92719 1.20696 0.95828 0.95272 0.96531 1.20926 1.01705 1.02063 0.92554 1.21102 0.95410 0.95354 1.00973 1.20383 1.02769 1.02490 0.91945 1.18986 0.98580 0.95715 0.94569 1.40183 1.26030 1.25985 1.03611 1.18934 0.94292 1.19987 1.13732 0.91062 1.26112 1.02635 0.93388 0.94821 1.69713 1.35231 1.28475 1.18251 0.86185 0.78811 0.78665 0.80892 1.13623 1.20749 1.20280 0.92207 0.90057 0.95289 0.92361 0.96562 0.75341 0.89052 0.88670 0.90537 0.85919 0.88793 0.88892 0.78859 0.82392 0.82314 0.83834 0.88450 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 8.24 71.98 0.59 -4.05 16 2 C 0.16 4.58 0.65 3.95 0.00 4.58 16 3 C 0.08 2.31 5.84 71.98 0.42 2.73 16 4 O -0.57 -13.52 12.67 -148.98 -1.89 -15.41 16 5 C -0.10 -1.85 5.76 31.82 0.18 -1.66 16 6 C -0.12 -1.77 7.10 32.03 0.23 -1.54 16 7 C 0.08 1.63 5.07 86.85 0.44 2.07 16 8 N -0.60 -19.73 2.82 -769.66 -2.17 -21.90 16 9 C 0.59 27.12 7.37 86.51 0.64 27.76 16 10 O -0.57 -31.60 12.79 -4.24 -0.05 -31.66 16 11 C -0.04 -1.93 6.73 39.91 0.27 -1.66 16 12 C -0.17 -6.49 9.12 22.63 0.21 -6.28 16 13 C -0.14 -5.60 6.16 -21.33 -0.13 -5.73 16 14 C -0.06 -1.94 10.06 22.31 0.22 -1.71 16 15 C -0.15 -4.32 9.97 22.03 0.22 -4.11 16 16 C -0.11 -3.69 10.02 22.32 0.22 -3.47 16 17 C -0.16 -6.95 6.59 22.38 0.15 -6.80 16 18 C 0.03 1.65 5.04 39.06 0.20 1.85 16 19 N -0.29 -16.08 2.43 -331.35 -0.80 -16.88 16 20 C -0.34 -21.40 9.05 84.09 0.76 -20.64 16 21 H 0.07 5.07 7.48 -2.91 -0.02 5.05 16 22 C 0.04 2.25 5.14 84.95 0.44 2.68 16 23 N -0.88 -54.45 13.95 21.67 0.30 -54.15 16 24 Si 0.93 46.74 23.82 68.60 1.63 48.37 16 25 H -0.21 -9.51 5.39 99.48 0.54 -8.97 16 26 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.28 -14.68 7.01 99.48 0.70 -13.98 16 28 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.08 2.29 7.65 -2.38 -0.02 2.27 16 30 H 0.03 1.18 6.53 -2.39 -0.02 1.16 16 31 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.02 0.62 7.02 -2.39 -0.02 0.60 16 33 H 0.40 6.07 9.12 -74.06 -0.68 5.40 16 34 H 0.09 1.40 7.84 -2.39 -0.02 1.38 16 35 H 0.09 1.54 7.83 -2.39 -0.02 1.53 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.09 2.04 5.83 -2.39 -0.01 2.02 16 39 H 0.09 1.62 7.73 -2.38 -0.02 1.60 16 40 H 0.19 5.08 4.54 -2.91 -0.01 5.07 16 41 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 43 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.10 4.69 5.57 -2.91 -0.02 4.68 16 45 H 0.29 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -84.03 348.09 2.25 -81.78 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.18 Total: 25.82 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 5.06 Total: -15.97 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -2.67 Total: -92.93 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.94 Total: -47.07 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.63 Total: 48.37 kcal Total: -84.03 2.25 -81.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612771971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.647 kcal (2) G-P(sol) polarization free energy of solvation -84.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds