Wall clock time and date at job start Tue Mar 31 2020 15:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 112.85124 * 2 1 4 4 C 1.53787 * 113.61711 * 228.69157 * 2 1 3 5 5 H 1.09001 * 113.61001 * 334.65932 * 4 2 1 6 6 O 1.42904 * 113.61210 * 105.46738 * 4 2 1 7 7 C 1.54046 * 87.07946 * 220.02297 * 4 2 1 8 8 C 1.53785 * 86.98720 * 25.43172 * 7 4 2 9 9 H 1.08998 * 113.61566 * 219.97993 * 8 7 4 10 10 N 1.46499 * 113.61470 * 89.15929 * 8 7 4 11 11 C 1.34772 * 119.99997 * 104.68926 * 10 8 7 12 12 O 1.21664 * 119.99998 * 355.05523 * 11 10 8 13 13 C 1.46888 * 120.00133 * 175.32815 * 11 10 8 14 14 C 1.36121 * 125.44105 * 172.99676 * 13 11 10 15 15 C 1.41699 * 107.75417 * 179.90544 * 14 13 11 16 16 C 1.40022 * 133.35500 * 180.09187 * 15 14 13 17 17 C 1.36570 * 119.83004 * 180.24388 * 16 15 14 18 18 C 1.38854 * 120.60494 * 0.04594 * 17 16 15 19 19 C 1.37845 * 120.63051 * 359.97417 * 18 17 16 20 20 C 1.39087 * 119.81446 * 0.02562 * 19 18 17 21 21 N 1.37843 * 133.16339 * 180.02562 * 20 19 18 22 22 C 1.36889 * 125.61715 * 0.02562 * 21 20 19 23 23 H 1.07999 * 120.00367 * 139.74601 * 22 21 20 24 24 C 1.39011 * 120.00044 * 319.73894 * 22 21 20 25 25 N 1.31346 * 119.99931 * 158.50614 * 24 22 21 26 26 Si 1.86807 * 119.99858 * 338.50384 * 24 22 21 27 27 H 1.48506 * 109.46992 * 95.50415 * 26 24 22 28 28 H 1.48501 * 109.46889 * 215.50332 * 26 24 22 29 29 H 1.48496 * 109.47297 * 335.50262 * 26 24 22 30 30 H 1.08994 * 109.47387 * 282.81157 * 1 2 3 31 31 H 1.09005 * 109.46827 * 42.81395 * 1 2 3 32 32 H 1.08999 * 109.46999 * 162.80912 * 1 2 3 33 33 H 1.09001 * 109.47193 * 191.19691 * 3 2 1 34 34 H 1.08997 * 109.46776 * 311.19609 * 3 2 1 35 35 H 1.09003 * 109.47037 * 71.19554 * 3 2 1 36 36 H 0.96698 * 113.99794 * 179.97438 * 6 4 2 37 37 H 1.08993 * 113.61628 * 270.92927 * 7 4 2 38 38 H 1.08996 * 113.69414 * 139.94394 * 7 4 2 39 39 H 0.97001 * 120.00200 * 284.68936 * 10 8 7 40 40 H 1.08003 * 126.11806 * 0.03135 * 14 13 11 41 41 H 1.08000 * 120.08306 * 0.28690 * 16 15 14 42 42 H 1.08004 * 119.70212 * 180.02562 * 17 16 15 43 43 H 1.07997 * 119.68805 * 179.97438 * 18 17 16 44 44 H 1.07999 * 120.09355 * 179.97438 * 19 18 17 45 45 H 0.97005 * 120.00050 * 185.01971 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1461 -0.9301 -1.0584 5 1 1.4939 -1.7540 -1.3484 6 8 2.6953 -0.2360 -2.1804 7 6 3.1941 -1.3143 0.0032 8 6 2.1460 -0.9281 1.0603 9 1 2.5637 -0.3971 1.9157 10 7 1.2704 -2.0358 1.4506 11 6 1.4476 -2.6489 2.6376 12 8 2.3890 -2.3437 3.3453 13 6 0.5077 -3.6899 3.0742 14 6 0.6529 -4.4712 4.1794 15 6 -0.4645 -5.3402 4.2440 16 6 -0.8522 -6.3423 5.1417 17 6 -2.0129 -7.0307 4.9316 18 6 -2.8141 -6.7471 3.8336 19 6 -2.4533 -5.7654 2.9357 20 6 -1.2757 -5.0508 3.1286 21 7 -0.6620 -4.0368 2.4249 22 6 -1.1344 -3.4660 1.2738 23 1 -1.0550 -2.3989 1.1281 24 6 -1.7161 -4.2601 0.2922 25 7 -2.5298 -3.7245 -0.5888 26 14 -1.3406 -6.0888 0.2263 27 1 -2.4015 -6.8383 0.9461 28 1 -1.2941 -6.5338 -1.1897 29 1 -0.0278 -6.3481 0.8700 30 1 -0.3634 0.2279 1.0020 31 1 -0.3633 0.7539 -0.6985 32 1 -0.3633 -0.9818 -0.3037 33 1 3.1942 1.3533 -0.1996 34 1 1.6415 2.0075 -0.7733 35 1 1.9600 1.8734 0.9728 36 1 3.0847 -0.8157 -2.8493 37 1 4.0724 -0.6690 0.0032 38 1 3.4466 -2.3746 0.0059 39 1 0.5630 -2.3280 0.8547 40 1 1.4720 -4.4338 4.8824 41 1 -0.2354 -6.5698 5.9986 42 1 -2.3103 -7.8029 5.6257 43 1 -3.7287 -7.3008 3.6815 44 1 -3.0827 -5.5522 2.0844 45 1 -2.9923 -4.2890 -1.2279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614665952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:46 Heat of formation + Delta-G solvation = 1.938263 kcal Electronic energy + Delta-G solvation = -29013.616436 eV Core-core repulsion = 25190.440193 eV Total energy + Delta-G solvation = -3823.176244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98194 -40.25025 -38.12182 -36.22960 -35.36050 -33.82153 -32.72096 -31.45109 -30.33066 -29.27924 -28.34793 -27.23076 -25.11134 -24.61173 -22.95030 -22.23478 -21.25497 -20.35383 -19.44751 -18.68050 -18.05924 -17.42031 -16.57177 -15.92188 -15.66829 -15.23342 -14.96881 -14.69261 -14.56017 -14.18913 -13.94978 -13.52985 -13.41256 -13.33456 -13.17459 -12.96427 -12.77210 -12.36786 -12.23776 -12.09468 -11.96023 -11.81864 -11.65348 -11.46528 -11.07235 -11.01834 -10.89403 -10.66939 -10.58835 -10.38189 -10.02357 -9.91969 -9.61702 -9.54829 -9.50294 -8.77063 -8.55221 -7.46075 -7.11346 -7.02973 -4.77839 1.53292 2.41688 2.76126 2.91081 3.04398 3.10653 3.62628 3.74167 3.95643 4.05230 4.25134 4.43796 4.54051 4.70071 4.74363 4.94795 5.06644 5.34149 5.44829 5.56647 5.59167 5.65310 5.72943 5.82616 5.85284 5.90720 6.00029 6.04999 6.07675 6.13165 6.16392 6.23412 6.24212 6.36273 6.48075 6.54908 6.58147 6.71161 6.77994 7.00583 7.02476 7.18421 7.28857 7.42879 7.58232 7.62515 7.69841 7.97290 8.13482 8.48024 8.82011 8.90224 9.89542 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.004697 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.313424 B = 5959.951236 C = 7036.407372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.114 4.114 4 C 0.083 3.917 5 H 0.084 0.916 6 O -0.557 6.557 7 C -0.181 4.181 8 C 0.131 3.869 9 H 0.102 0.898 10 N -0.711 5.711 11 C 0.597 3.403 12 O -0.553 6.553 13 C -0.018 4.018 14 C -0.158 4.158 15 C -0.126 4.126 16 C -0.075 4.075 17 C -0.160 4.160 18 C -0.130 4.130 19 C -0.104 4.104 20 C 0.061 3.939 21 N -0.271 5.271 22 C -0.379 4.379 23 H 0.127 0.873 24 C 0.087 3.913 25 N -0.814 5.814 26 Si 0.868 3.132 27 H -0.241 1.241 28 H -0.281 1.281 29 H -0.254 1.254 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.373 0.627 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.420 0.580 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.119 0.881 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 1.477 -1.267 4.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.171 4.171 4 C 0.024 3.976 5 H 0.102 0.898 6 O -0.361 6.361 7 C -0.220 4.220 8 C 0.025 3.975 9 H 0.120 0.880 10 N -0.370 5.370 11 C 0.387 3.613 12 O -0.432 6.432 13 C -0.132 4.132 14 C -0.185 4.185 15 C -0.131 4.131 16 C -0.094 4.094 17 C -0.179 4.179 18 C -0.150 4.150 19 C -0.124 4.124 20 C -0.053 4.053 21 N 0.064 4.936 22 C -0.505 4.505 23 H 0.144 0.856 24 C -0.129 4.129 25 N -0.442 5.442 26 Si 0.692 3.308 27 H -0.165 1.165 28 H -0.207 1.207 29 H -0.177 1.177 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.220 0.780 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.267 0.733 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.195 2.465 -1.052 4.978 hybrid contribution -0.185 -1.518 -0.904 1.776 sum 4.009 0.948 -1.956 4.560 Atomic orbital electron populations 1.21789 0.92855 1.03022 1.02217 1.22364 0.96375 0.95615 0.93620 1.21371 1.00932 0.93395 1.01407 1.23697 0.94746 0.94498 0.84622 0.89815 1.86486 1.79066 1.37431 1.33163 1.24142 0.98391 1.02365 0.97150 1.21680 0.91183 0.88333 0.96331 0.87971 1.46462 1.36322 1.34064 1.20170 1.17200 0.83535 0.80008 0.80593 1.90726 1.31627 1.65243 1.55565 1.20143 0.89742 1.03568 0.99776 1.20453 0.99923 0.98615 0.99503 1.17987 0.97166 1.00719 0.97195 1.20177 0.96365 0.95113 0.97774 1.20356 0.96408 1.02063 0.99075 1.20580 0.99955 0.98861 0.95608 1.20213 0.95260 0.96725 1.00196 1.18355 0.96426 0.96541 0.94007 1.40276 1.12470 1.23881 1.16923 1.19305 1.42594 0.95140 0.93494 0.85581 1.25471 0.93103 1.00511 0.93858 1.69658 1.19489 1.38413 1.16626 0.87024 0.82583 0.83114 0.78111 1.16484 1.20747 1.17694 0.91999 0.92358 0.91182 0.92039 0.91982 0.92565 0.78002 0.88758 0.90886 0.73337 0.84392 0.87083 0.87241 0.86978 0.86355 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.45 37.16 0.31 -1.87 16 2 C -0.08 -1.14 1.34 -153.69 -0.21 -1.34 16 3 C -0.11 -1.43 8.45 37.16 0.31 -1.12 16 4 C 0.08 1.16 4.52 -25.78 -0.12 1.05 16 5 H 0.08 1.25 7.88 -51.93 -0.41 0.84 16 6 O -0.56 -6.99 12.77 -35.23 -0.45 -7.44 16 7 C -0.18 -2.57 7.38 -25.78 -0.19 -2.76 16 8 C 0.13 2.12 3.70 -67.11 -0.25 1.87 16 9 H 0.10 1.71 7.55 -51.93 -0.39 1.32 16 10 N -0.71 -13.54 4.58 -54.26 -0.25 -13.79 16 11 C 0.60 12.96 7.76 -12.76 -0.10 12.86 16 12 O -0.55 -12.69 16.53 5.22 0.09 -12.60 16 13 C -0.02 -0.40 6.77 -82.25 -0.56 -0.96 16 14 C -0.16 -3.43 10.55 -39.02 -0.41 -3.84 16 15 C -0.13 -2.71 6.16 -106.89 -0.66 -3.37 16 16 C -0.08 -1.39 10.06 -39.52 -0.40 -1.79 16 17 C -0.16 -2.75 9.97 -39.96 -0.40 -3.15 16 18 C -0.13 -2.39 10.02 -39.50 -0.40 -2.78 16 19 C -0.10 -2.23 6.67 -39.41 -0.26 -2.49 16 20 C 0.06 1.39 5.20 -83.83 -0.44 0.96 16 21 N -0.27 -6.36 2.45 -56.08 -0.14 -6.50 16 22 C -0.38 -8.93 8.19 -15.01 -0.12 -9.06 16 23 H 0.13 2.99 5.61 -52.49 -0.29 2.70 16 24 C 0.09 2.03 4.86 -17.47 -0.08 1.95 16 25 N -0.81 -19.24 13.95 55.50 0.77 -18.47 16 26 Si 0.87 18.92 24.27 -169.99 -4.13 14.80 16 27 H -0.24 -5.02 5.46 56.52 0.31 -4.72 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.25 -5.98 7.11 56.52 0.40 -5.58 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.07 1.22 5.94 -51.93 -0.31 0.91 16 33 H 0.06 0.75 7.20 -51.93 -0.37 0.37 16 34 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.37 3.18 9.12 45.56 0.42 3.60 16 37 H 0.09 1.21 7.66 -51.93 -0.40 0.81 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.42 8.28 3.40 -40.82 -0.14 8.14 16 40 H 0.14 2.73 8.06 -52.48 -0.42 2.31 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.12 2.56 5.62 -52.49 -0.30 2.27 16 45 H 0.29 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -27.22 355.39 -7.92 -35.14 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -5.22 Total: 19.34 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -3.96 Total: -15.84 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.39 Total: -38.76 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.36 Total: -20.04 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.13 Total: 14.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.22 -7.92 -35.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614665952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.079 kcal (2) G-P(sol) polarization free energy of solvation -27.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds