Wall clock time and date at job start Tue Mar 31 2020 15:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 112.85124 * 2 1 4 4 C 1.53787 * 113.61711 * 228.69157 * 2 1 3 5 5 H 1.09001 * 113.61001 * 334.65932 * 4 2 1 6 6 O 1.42904 * 113.61210 * 105.46738 * 4 2 1 7 7 C 1.54046 * 87.07946 * 220.02297 * 4 2 1 8 8 C 1.53785 * 86.98720 * 25.43172 * 7 4 2 9 9 H 1.08998 * 113.61566 * 219.97993 * 8 7 4 10 10 N 1.46499 * 113.61470 * 89.15929 * 8 7 4 11 11 C 1.34772 * 119.99997 * 104.68926 * 10 8 7 12 12 O 1.21664 * 119.99998 * 355.05523 * 11 10 8 13 13 C 1.46888 * 120.00133 * 175.32815 * 11 10 8 14 14 C 1.36121 * 125.44105 * 172.99676 * 13 11 10 15 15 C 1.41699 * 107.75417 * 179.90544 * 14 13 11 16 16 C 1.40022 * 133.35500 * 180.09187 * 15 14 13 17 17 C 1.36570 * 119.83004 * 180.24388 * 16 15 14 18 18 C 1.38854 * 120.60494 * 0.04594 * 17 16 15 19 19 C 1.37845 * 120.63051 * 359.97417 * 18 17 16 20 20 C 1.39087 * 119.81446 * 0.02562 * 19 18 17 21 21 N 1.37843 * 133.16339 * 180.02562 * 20 19 18 22 22 C 1.36889 * 125.61715 * 0.02562 * 21 20 19 23 23 H 1.07999 * 120.00367 * 139.74601 * 22 21 20 24 24 C 1.39011 * 120.00044 * 319.73894 * 22 21 20 25 25 N 1.31346 * 119.99931 * 158.50614 * 24 22 21 26 26 Si 1.86807 * 119.99858 * 338.50384 * 24 22 21 27 27 H 1.48506 * 109.46992 * 95.50415 * 26 24 22 28 28 H 1.48501 * 109.46889 * 215.50332 * 26 24 22 29 29 H 1.48496 * 109.47297 * 335.50262 * 26 24 22 30 30 H 1.08994 * 109.47387 * 282.81157 * 1 2 3 31 31 H 1.09005 * 109.46827 * 42.81395 * 1 2 3 32 32 H 1.08999 * 109.46999 * 162.80912 * 1 2 3 33 33 H 1.09001 * 109.47193 * 191.19691 * 3 2 1 34 34 H 1.08997 * 109.46776 * 311.19609 * 3 2 1 35 35 H 1.09003 * 109.47037 * 71.19554 * 3 2 1 36 36 H 0.96698 * 113.99794 * 179.97438 * 6 4 2 37 37 H 1.08993 * 113.61628 * 270.92927 * 7 4 2 38 38 H 1.08996 * 113.69414 * 139.94394 * 7 4 2 39 39 H 0.97001 * 120.00200 * 284.68936 * 10 8 7 40 40 H 1.08003 * 126.11806 * 0.03135 * 14 13 11 41 41 H 1.08000 * 120.08306 * 0.28690 * 16 15 14 42 42 H 1.08004 * 119.70212 * 180.02562 * 17 16 15 43 43 H 1.07997 * 119.68805 * 179.97438 * 18 17 16 44 44 H 1.07999 * 120.09355 * 179.97438 * 19 18 17 45 45 H 0.97005 * 120.00050 * 185.01971 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1461 -0.9301 -1.0584 5 1 1.4939 -1.7540 -1.3484 6 8 2.6953 -0.2360 -2.1804 7 6 3.1941 -1.3143 0.0032 8 6 2.1460 -0.9281 1.0603 9 1 2.5637 -0.3971 1.9157 10 7 1.2704 -2.0358 1.4506 11 6 1.4476 -2.6489 2.6376 12 8 2.3890 -2.3437 3.3453 13 6 0.5077 -3.6899 3.0742 14 6 0.6529 -4.4712 4.1794 15 6 -0.4645 -5.3402 4.2440 16 6 -0.8522 -6.3423 5.1417 17 6 -2.0129 -7.0307 4.9316 18 6 -2.8141 -6.7471 3.8336 19 6 -2.4533 -5.7654 2.9357 20 6 -1.2757 -5.0508 3.1286 21 7 -0.6620 -4.0368 2.4249 22 6 -1.1344 -3.4660 1.2738 23 1 -1.0550 -2.3989 1.1281 24 6 -1.7161 -4.2601 0.2922 25 7 -2.5298 -3.7245 -0.5888 26 14 -1.3406 -6.0888 0.2263 27 1 -2.4015 -6.8383 0.9461 28 1 -1.2941 -6.5338 -1.1897 29 1 -0.0278 -6.3481 0.8700 30 1 -0.3634 0.2279 1.0020 31 1 -0.3633 0.7539 -0.6985 32 1 -0.3633 -0.9818 -0.3037 33 1 3.1942 1.3533 -0.1996 34 1 1.6415 2.0075 -0.7733 35 1 1.9600 1.8734 0.9728 36 1 3.0847 -0.8157 -2.8493 37 1 4.0724 -0.6690 0.0032 38 1 3.4466 -2.3746 0.0059 39 1 0.5630 -2.3280 0.8547 40 1 1.4720 -4.4338 4.8824 41 1 -0.2354 -6.5698 5.9986 42 1 -2.3103 -7.8029 5.6257 43 1 -3.7287 -7.3008 3.6815 44 1 -3.0827 -5.5522 2.0844 45 1 -2.9923 -4.2890 -1.2279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614665952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:46 Heat of formation + Delta-G solvation = -14.855463 kcal Electronic energy + Delta-G solvation = -29014.344667 eV Core-core repulsion = 25190.440193 eV Total energy + Delta-G solvation = -3823.904474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.57710 -41.58026 -39.67905 -37.78960 -36.51144 -35.52034 -34.21548 -33.10822 -31.58358 -30.81399 -29.91881 -28.37405 -26.80806 -26.03152 -24.31459 -23.51866 -22.85507 -21.90120 -21.07593 -20.33394 -19.39466 -18.65092 -18.01534 -17.60394 -17.07439 -16.73124 -16.40072 -16.21822 -16.04030 -15.72993 -15.36276 -15.05393 -15.01755 -14.77154 -14.53513 -14.51557 -14.17855 -13.90069 -13.68044 -13.39317 -13.20193 -13.09923 -13.01212 -12.82330 -12.69991 -12.48650 -12.30371 -12.12241 -11.98143 -11.88902 -11.50765 -11.32988 -11.21334 -11.20358 -10.67271 -10.42598 -10.05820 -9.07522 -8.88307 -8.65898 -6.57120 -0.06301 0.88009 1.08570 1.17592 1.30829 1.33981 1.97579 2.12732 2.24225 2.40022 2.77349 3.13569 3.15973 3.28785 3.58458 3.71136 3.84928 3.91458 4.02160 4.18788 4.28578 4.36199 4.42796 4.50890 4.55881 4.63497 4.65753 4.74367 4.78740 4.83405 4.85037 4.93726 5.01743 5.04201 5.09208 5.12819 5.23972 5.28153 5.33637 5.37525 5.55990 5.67135 5.69929 5.80763 5.98016 6.02300 6.36080 6.49161 6.74808 6.85040 7.15984 7.19056 8.15138 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.004697 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.313424 B = 5959.951236 C = 7036.407372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 C -0.109 4.109 4 C 0.092 3.908 5 H 0.069 0.931 6 O -0.558 6.558 7 C -0.169 4.169 8 C 0.116 3.884 9 H 0.097 0.903 10 N -0.705 5.705 11 C 0.593 3.407 12 O -0.573 6.573 13 C -0.044 4.044 14 C -0.160 4.160 15 C -0.144 4.144 16 C -0.075 4.075 17 C -0.152 4.152 18 C -0.113 4.113 19 C -0.141 4.141 20 C 0.040 3.960 21 N -0.288 5.288 22 C -0.386 4.386 23 H 0.114 0.886 24 C 0.069 3.931 25 N -0.840 5.840 26 Si 0.906 3.094 27 H -0.224 1.224 28 H -0.275 1.275 29 H -0.283 1.283 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.392 0.608 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.417 0.583 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.146 0.854 44 H 0.107 0.893 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 0.265 -0.497 3.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 C -0.166 4.166 4 C 0.033 3.967 5 H 0.087 0.913 6 O -0.365 6.365 7 C -0.208 4.208 8 C 0.010 3.990 9 H 0.115 0.885 10 N -0.362 5.362 11 C 0.382 3.618 12 O -0.454 6.454 13 C -0.158 4.158 14 C -0.187 4.187 15 C -0.149 4.149 16 C -0.094 4.094 17 C -0.170 4.170 18 C -0.133 4.133 19 C -0.161 4.161 20 C -0.074 4.074 21 N 0.046 4.954 22 C -0.513 4.513 23 H 0.131 0.869 24 C -0.145 4.145 25 N -0.469 5.469 26 Si 0.730 3.270 27 H -0.147 1.147 28 H -0.200 1.200 29 H -0.209 1.209 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.242 0.758 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.263 0.737 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.164 0.836 44 H 0.125 0.875 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.165 1.258 -0.319 4.363 hybrid contribution -0.196 -1.199 -1.016 1.584 sum 3.969 0.059 -1.335 4.188 Atomic orbital electron populations 1.21707 0.93893 1.01889 1.01830 1.22379 0.95500 0.96656 0.92918 1.21365 1.01287 0.91854 1.02110 1.23417 0.94317 0.93850 0.85129 0.91292 1.86440 1.79049 1.37878 1.33181 1.24099 0.98573 1.02205 0.95961 1.21936 0.91976 0.88078 0.96983 0.88535 1.46442 1.36307 1.34213 1.19204 1.17235 0.83301 0.80138 0.81175 1.90688 1.32351 1.66116 1.56279 1.20483 0.90358 1.04472 1.00473 1.20743 1.00416 0.98331 0.99250 1.18373 0.96915 1.01830 0.97808 1.20632 0.97192 0.93712 0.97856 1.20872 0.95161 1.02094 0.98912 1.21109 1.00754 0.96964 0.94469 1.20348 0.95342 0.98764 1.01617 1.18826 0.97367 0.96505 0.94654 1.40306 1.13034 1.24835 1.17229 1.19237 1.43055 0.94791 0.94184 0.86910 1.25758 0.92963 1.02218 0.93589 1.69671 1.20483 1.39271 1.17444 0.86491 0.81150 0.81360 0.78041 1.14703 1.20050 1.20875 0.93003 0.90996 0.93694 0.91198 0.91324 0.91868 0.75787 0.86713 0.91813 0.73710 0.83003 0.83815 0.82691 0.83618 0.87494 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.45 71.98 0.61 -3.72 16 2 C -0.07 -2.12 1.34 -51.65 -0.07 -2.19 16 3 C -0.11 -2.58 8.45 71.98 0.61 -1.97 16 4 C 0.09 2.54 4.52 31.21 0.14 2.69 16 5 H 0.07 2.12 7.88 -2.39 -0.02 2.10 16 6 O -0.56 -13.05 12.77 -148.98 -1.90 -14.96 16 7 C -0.17 -4.74 7.38 31.21 0.23 -4.51 16 8 C 0.12 3.81 3.70 45.52 0.17 3.98 16 9 H 0.10 3.29 7.55 -2.39 -0.02 3.27 16 10 N -0.70 -28.14 4.58 -443.80 -2.03 -30.17 16 11 C 0.59 26.77 7.76 86.51 0.67 27.44 16 12 O -0.57 -27.08 16.53 -4.23 -0.07 -27.15 16 13 C -0.04 -2.08 6.77 39.91 0.27 -1.81 16 14 C -0.16 -7.00 10.55 22.63 0.24 -6.76 16 15 C -0.14 -6.11 6.16 -21.33 -0.13 -6.25 16 16 C -0.08 -2.53 10.06 22.31 0.22 -2.31 16 17 C -0.15 -4.53 9.97 22.03 0.22 -4.31 16 18 C -0.11 -3.78 10.02 22.32 0.22 -3.55 16 19 C -0.14 -5.89 6.67 22.38 0.15 -5.74 16 20 C 0.04 1.84 5.20 39.06 0.20 2.04 16 21 N -0.29 -14.00 2.45 -331.34 -0.81 -14.81 16 22 C -0.39 -19.08 8.19 84.09 0.69 -18.39 16 23 H 0.11 5.72 5.61 -2.91 -0.02 5.70 16 24 C 0.07 3.32 4.86 84.95 0.41 3.73 16 25 N -0.84 -40.80 13.95 21.67 0.30 -40.50 16 26 Si 0.91 39.58 24.27 68.60 1.67 41.25 16 27 H -0.22 -9.06 5.46 99.48 0.54 -8.52 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 29 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 2.05 8.07 -2.38 -0.02 2.03 16 32 H 0.04 1.65 5.94 -2.39 -0.01 1.64 16 33 H 0.07 1.55 7.20 -2.39 -0.02 1.53 16 34 H 0.07 1.55 8.10 -2.39 -0.02 1.54 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.39 5.94 9.12 -74.06 -0.68 5.27 16 37 H 0.11 2.75 7.66 -2.39 -0.02 2.73 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.42 17.47 3.40 -92.71 -0.32 17.16 16 40 H 0.15 6.01 8.06 -2.91 -0.02 5.98 16 41 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 42 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 44 H 0.11 4.63 5.62 -2.91 -0.02 4.62 16 45 H 0.30 13.23 8.31 -92.70 -0.77 12.46 16 Total: -1.00 -60.24 355.39 1.89 -58.35 By element: Atomic # 1 Polarization: 49.74 SS G_CDS: -0.11 Total: 49.63 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 4.86 Total: -21.63 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.54 Total: -85.48 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.97 Total: -42.10 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.67 Total: 41.25 kcal Total: -60.24 1.89 -58.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614665952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.492 kcal (2) G-P(sol) polarization free energy of solvation -60.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds