Wall clock time and date at job start Tue Mar 31 2020 15:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 112.90903 * 2 1 4 4 C 1.53781 * 113.61493 * 228.74712 * 2 1 3 5 5 H 1.08997 * 113.61183 * 105.47233 * 4 2 1 6 6 O 1.42902 * 113.61498 * 334.57050 * 4 2 1 7 7 C 1.53779 * 87.08250 * 220.02139 * 4 2 1 8 8 C 1.53776 * 87.08138 * 25.43163 * 7 4 2 9 9 H 1.09002 * 113.69192 * 89.12680 * 8 7 4 10 10 N 1.46508 * 113.61438 * 220.01831 * 8 7 4 11 11 C 1.34775 * 119.99929 * 248.95958 * 10 8 7 12 12 O 1.21671 * 120.00023 * 4.52235 * 11 10 8 13 13 C 1.46894 * 119.99964 * 184.51389 * 11 10 8 14 14 C 1.36116 * 125.43746 * 185.21076 * 13 11 10 15 15 C 1.41699 * 107.74964 * 180.02562 * 14 13 11 16 16 C 1.40023 * 133.34922 * 179.97438 * 15 14 13 17 17 C 1.36579 * 119.82696 * 179.97438 * 16 15 14 18 18 C 1.38859 * 120.60236 * 0.05007 * 17 16 15 19 19 C 1.37841 * 120.63012 * 359.97438 * 18 17 16 20 20 C 1.39086 * 119.81584 * 359.97438 * 19 18 17 21 21 N 1.37844 * 133.15997 * 179.97438 * 20 19 18 22 22 C 1.36882 * 125.62430 * 359.73385 * 21 20 19 23 23 H 1.07999 * 120.00365 * 129.34609 * 22 21 20 24 24 C 1.39019 * 119.99778 * 309.35179 * 22 21 20 25 25 N 1.31347 * 120.00211 * 4.02585 * 24 22 21 26 26 Si 1.86800 * 119.99691 * 184.02420 * 24 22 21 27 27 H 1.48504 * 109.47195 * 95.07273 * 26 24 22 28 28 H 1.48501 * 109.47000 * 215.06774 * 26 24 22 29 29 H 1.48499 * 109.47217 * 335.06979 * 26 24 22 30 30 H 1.09001 * 109.46846 * 288.75214 * 1 2 3 31 31 H 1.09004 * 109.46795 * 48.74305 * 1 2 3 32 32 H 1.08997 * 109.47322 * 168.74762 * 1 2 3 33 33 H 1.09003 * 109.47160 * 195.57938 * 3 2 1 34 34 H 1.08995 * 109.47253 * 315.57835 * 3 2 1 35 35 H 1.09000 * 109.46848 * 75.58528 * 3 2 1 36 36 H 0.96693 * 114.00068 * 180.02562 * 6 4 2 37 37 H 1.09010 * 113.61444 * 270.88117 * 7 4 2 38 38 H 1.09002 * 113.61550 * 139.98125 * 7 4 2 39 39 H 0.96998 * 119.99774 * 68.96364 * 10 8 7 40 40 H 1.08003 * 126.12477 * 359.97438 * 14 13 11 41 41 H 1.07995 * 120.08673 * 359.97438 * 16 15 14 42 42 H 1.08004 * 119.69864 * 180.02562 * 17 16 15 43 43 H 1.07996 * 119.68201 * 179.97438 * 18 17 16 44 44 H 1.08000 * 120.09075 * 179.97438 * 19 18 17 45 45 H 0.96998 * 120.00294 * 185.00188 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0593 5 1 2.5650 -0.3989 -1.9145 6 8 1.2919 -2.0100 -1.4390 7 6 3.1923 -1.3136 0.0000 8 6 2.1460 -0.9291 1.0593 9 1 1.4939 -1.7527 1.3500 10 7 2.7092 -0.2164 2.2088 11 6 2.7518 -0.8129 3.4167 12 8 2.3990 -1.9713 3.5359 13 6 3.2242 -0.0647 4.5891 14 6 3.4074 -0.5824 5.8345 15 6 3.8685 0.4625 6.6733 16 6 4.2186 0.5243 8.0276 17 6 4.6395 1.7063 8.5671 18 6 4.7230 2.8505 7.7848 19 6 4.3832 2.8145 6.4494 20 6 3.9529 1.6221 5.8772 21 7 3.5534 1.2776 4.6037 22 6 3.4869 2.1265 3.5319 23 1 3.9538 1.8535 2.5971 24 6 2.8186 3.3400 3.6468 25 7 2.3192 3.7078 4.8046 26 14 2.6307 4.4477 2.1544 27 1 1.3175 4.1917 1.5101 28 1 2.7046 5.8684 2.5800 29 1 3.7207 4.1635 1.1867 30 1 -0.3633 0.3304 0.9731 31 1 -0.3633 0.6777 -0.7726 32 1 -0.3634 -1.0079 -0.2005 33 1 3.1789 1.3587 -0.2760 34 1 1.5910 2.0297 -0.7193 35 1 2.0313 1.8436 0.9953 36 1 1.6740 -2.5980 -2.1047 37 1 4.0712 -0.6687 0.0000 38 1 3.4443 -2.3741 0.0000 39 1 3.0514 0.6847 2.1006 40 1 3.2319 -1.6062 6.1306 41 1 4.1561 -0.3603 8.6439 42 1 4.9095 1.7516 9.6119 43 1 5.0572 3.7774 8.2269 44 1 4.4510 3.7098 5.8491 45 1 1.7908 4.5186 4.8694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614665954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:50 Heat of formation + Delta-G solvation = -4.309115 kcal Electronic energy + Delta-G solvation = -28965.698512 eV Core-core repulsion = 25142.251362 eV Total energy + Delta-G solvation = -3823.447150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.70230 -40.11967 -38.02183 -35.91927 -35.40814 -33.68745 -32.66196 -30.75039 -30.36278 -28.95693 -28.03541 -27.39273 -25.08319 -24.69760 -22.66009 -22.21005 -20.98079 -20.04290 -19.38697 -18.66779 -18.03968 -17.15842 -16.48378 -15.77284 -15.55897 -15.14648 -14.90287 -14.66037 -14.46799 -14.22995 -13.63531 -13.49678 -13.19860 -13.05855 -12.91592 -12.77872 -12.45072 -12.41601 -12.24027 -12.03684 -11.93026 -11.74339 -11.61856 -11.49778 -11.14879 -10.98999 -10.79866 -10.72689 -10.64401 -10.15502 -10.00865 -9.76352 -9.75443 -9.35074 -9.29193 -8.61556 -8.41859 -7.18533 -6.86784 -6.58851 -4.79793 1.84892 2.73927 2.85015 2.89495 2.92038 3.13998 3.62858 3.83589 3.95768 4.23525 4.49895 4.53101 4.59675 4.64093 4.95574 5.05895 5.06953 5.27587 5.40675 5.60589 5.69954 5.72439 5.76845 5.85838 5.94917 5.96697 5.99912 6.08367 6.13864 6.16848 6.28021 6.42688 6.43419 6.55488 6.59084 6.70365 6.79038 6.90509 7.09563 7.11303 7.13260 7.48176 7.56935 7.57766 7.65522 7.90059 7.93432 8.24791 8.31348 8.63698 8.98355 9.26013 10.10468 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004824 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.705331 B = 5802.417291 C = 7355.361801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.144 4.144 4 C 0.088 3.912 5 H 0.070 0.930 6 O -0.546 6.546 7 C -0.184 4.184 8 C 0.138 3.862 9 H 0.116 0.884 10 N -0.718 5.718 11 C 0.596 3.404 12 O -0.558 6.558 13 C -0.015 4.015 14 C -0.163 4.163 15 C -0.135 4.135 16 C -0.087 4.087 17 C -0.160 4.160 18 C -0.147 4.147 19 C -0.052 4.052 20 C 0.113 3.887 21 N -0.266 5.266 22 C -0.376 4.376 23 H 0.102 0.898 24 C 0.065 3.935 25 N -0.817 5.817 26 Si 0.911 3.089 27 H -0.263 1.263 28 H -0.274 1.274 29 H -0.258 1.258 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.377 0.623 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.414 0.586 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 -1.662 -9.114 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.201 4.201 4 C 0.029 3.971 5 H 0.088 0.912 6 O -0.351 6.351 7 C -0.223 4.223 8 C 0.032 3.968 9 H 0.134 0.866 10 N -0.377 5.377 11 C 0.386 3.614 12 O -0.437 6.437 13 C -0.129 4.129 14 C -0.191 4.191 15 C -0.140 4.140 16 C -0.106 4.106 17 C -0.179 4.179 18 C -0.168 4.168 19 C -0.072 4.072 20 C -0.001 4.001 21 N 0.069 4.931 22 C -0.503 4.503 23 H 0.119 0.881 24 C -0.150 4.150 25 N -0.445 5.445 26 Si 0.734 3.266 27 H -0.188 1.188 28 H -0.199 1.199 29 H -0.181 1.181 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.224 0.776 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.261 0.739 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.135 0.865 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.377 -1.742 -8.829 9.007 hybrid contribution 0.270 0.898 -1.018 1.383 sum 0.647 -0.844 -9.846 9.903 Atomic orbital electron populations 1.21591 0.93225 1.02505 1.01576 1.22333 0.96877 0.94641 0.94552 1.21772 1.00638 0.94156 1.03533 1.22671 0.90914 0.88551 0.95012 0.91184 1.86461 1.44254 1.41223 1.63118 1.24117 0.98326 1.02546 0.97351 1.22433 0.94955 0.95337 0.84044 0.86637 1.46725 1.62718 1.20522 1.07701 1.17329 0.76598 0.85386 0.82104 1.90710 1.50489 1.16692 1.85802 1.20202 1.11180 0.86489 0.95076 1.20421 1.09274 0.98390 0.91021 1.18058 1.08190 0.93703 0.94027 1.20057 1.00417 0.97105 0.93028 1.20275 1.05631 0.93430 0.98602 1.20584 1.05040 0.97510 0.93645 1.20072 0.97565 0.95529 0.94001 1.18341 1.01399 0.94478 0.85921 1.39863 1.41487 1.04963 1.06836 1.19348 1.39329 0.99822 0.91779 0.88125 1.25694 0.94003 0.97385 0.97894 1.69913 1.27654 1.23694 1.23281 0.86177 0.80039 0.79605 0.80752 1.18805 1.19865 1.18143 0.92435 0.92873 0.91234 0.91990 0.91787 0.90499 0.77560 0.89175 0.90557 0.73912 0.84991 0.87775 0.87938 0.87698 0.86549 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.04 37.16 0.34 -1.52 16 2 C -0.08 -1.17 1.35 -153.69 -0.21 -1.38 16 3 C -0.14 -2.01 8.21 37.16 0.31 -1.70 16 4 C 0.09 1.04 4.67 -25.92 -0.12 0.91 16 5 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 6 O -0.55 -6.09 12.12 -35.23 -0.43 -6.52 16 7 C -0.18 -2.46 7.36 -25.92 -0.19 -2.65 16 8 C 0.14 2.30 3.65 -67.12 -0.24 2.06 16 9 H 0.12 2.14 7.39 -51.93 -0.38 1.76 16 10 N -0.72 -14.07 5.05 -54.25 -0.27 -14.34 16 11 C 0.60 13.68 7.77 -12.76 -0.10 13.59 16 12 O -0.56 -13.62 16.44 5.21 0.09 -13.53 16 13 C -0.02 -0.37 6.77 -82.25 -0.56 -0.93 16 14 C -0.16 -3.86 10.55 -39.02 -0.41 -4.27 16 15 C -0.14 -3.19 6.16 -106.89 -0.66 -3.85 16 16 C -0.09 -1.79 10.06 -39.51 -0.40 -2.19 16 17 C -0.16 -3.09 9.97 -39.95 -0.40 -3.48 16 18 C -0.15 -2.98 10.02 -39.50 -0.40 -3.37 16 19 C -0.05 -1.20 8.59 -39.41 -0.34 -1.54 16 20 C 0.11 2.80 6.02 -83.83 -0.50 2.30 16 21 N -0.27 -6.60 2.79 -56.08 -0.16 -6.76 16 22 C -0.38 -8.77 7.89 -15.01 -0.12 -8.89 16 23 H 0.10 2.18 6.05 -52.49 -0.32 1.86 16 24 C 0.06 1.47 5.15 -17.47 -0.09 1.38 16 25 N -0.82 -20.02 10.65 55.50 0.59 -19.43 16 26 Si 0.91 17.02 27.79 -169.99 -4.72 12.30 16 27 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 28 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 29 H -0.26 -4.52 7.11 56.52 0.40 -4.11 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 32 H 0.07 0.98 6.96 -51.93 -0.36 0.62 16 33 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 34 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.08 1.26 4.99 -51.93 -0.26 1.00 16 36 H 0.38 2.45 9.12 45.56 0.42 2.87 16 37 H 0.09 1.16 7.71 -51.92 -0.40 0.76 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.41 8.02 2.45 -40.82 -0.10 7.92 16 40 H 0.13 2.89 8.06 -52.48 -0.42 2.47 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.12 2.74 6.95 -52.49 -0.36 2.38 16 45 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -28.92 359.52 -8.67 -37.59 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.81 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -4.09 Total: -15.54 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.16 Total: -40.53 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.34 Total: -20.05 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -4.72 Total: 12.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.92 -8.67 -37.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614665954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.278 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds