Wall clock time and date at job start Tue Mar 31 2020 15:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88425 * 2 1 4 4 C 1.55129 * 111.19620 * 236.06781 * 2 1 3 5 5 N 1.47430 * 104.71815 * 279.19206 * 4 2 1 6 6 C 1.34773 * 125.64795 * 155.81792 * 5 4 2 7 7 O 1.21669 * 120.00175 * 355.37593 * 6 5 4 8 8 C 1.46888 * 119.99955 * 175.10306 * 6 5 4 9 9 C 1.36122 * 125.43797 * 6.06772 * 8 6 5 10 10 C 1.41705 * 107.74795 * 180.02562 * 9 8 6 11 11 C 1.40020 * 133.34933 * 180.02562 * 10 9 8 12 12 C 1.36575 * 119.82886 * 179.97438 * 11 10 9 13 13 C 1.38852 * 120.60304 * 359.97438 * 12 11 10 14 14 C 1.37839 * 120.63222 * 0.02562 * 13 12 11 15 15 C 1.39095 * 119.81340 * 0.02562 * 14 13 12 16 16 N 1.37838 * 133.16126 * 180.37337 * 15 14 13 17 17 C 1.36897 * 125.61909 * 359.89362 * 16 15 14 18 18 H 1.08001 * 119.99612 * 220.09367 * 17 16 15 19 19 C 1.39008 * 120.00306 * 40.10117 * 17 16 15 20 20 N 1.31347 * 119.99678 * 8.83110 * 19 17 16 21 21 Si 1.86794 * 120.00032 * 188.83941 * 19 17 16 22 22 H 1.48505 * 109.47229 * 64.99281 * 21 19 17 23 23 H 1.48501 * 109.47329 * 184.99565 * 21 19 17 24 24 H 1.48502 * 109.47154 * 304.99676 * 21 19 17 25 25 C 1.47026 * 108.70431 * 335.55091 * 5 4 2 26 26 C 1.54323 * 107.26883 * 1.28832 * 25 5 4 27 27 H 1.08998 * 110.72318 * 263.82887 * 26 25 5 28 28 O 1.42897 * 110.72064 * 140.73427 * 26 25 5 29 29 H 1.08996 * 109.47551 * 296.12236 * 1 2 3 30 30 H 1.08999 * 109.46829 * 56.12618 * 1 2 3 31 31 H 1.09004 * 109.46979 * 176.11868 * 1 2 3 32 32 H 1.09003 * 109.47389 * 183.88282 * 3 2 1 33 33 H 1.09007 * 109.47232 * 303.87375 * 3 2 1 34 34 H 1.09000 * 109.47570 * 63.88065 * 3 2 1 35 35 H 1.09000 * 110.50052 * 160.35161 * 4 2 1 36 36 H 1.08999 * 110.34378 * 37.94758 * 4 2 1 37 37 H 1.07997 * 126.12454 * 359.97438 * 9 8 6 38 38 H 1.08001 * 120.08652 * 359.97438 * 11 10 9 39 39 H 1.08003 * 119.69452 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.68591 * 179.97438 * 13 12 11 41 41 H 1.07999 * 120.09815 * 179.97438 * 14 13 12 42 42 H 0.97005 * 119.99404 * 184.98685 * 20 19 17 43 43 H 1.08999 * 109.88400 * 120.70672 * 25 5 4 44 44 H 1.09000 * 109.87855 * 241.72216 * 25 5 4 45 45 H 0.96700 * 113.99893 * 65.37385 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0909 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9472 -3.2835 -1.5926 7 8 1.8625 -3.1220 -2.7955 8 6 1.9829 -4.6418 -1.0347 9 6 1.9636 -4.9515 0.2907 10 6 2.0119 -6.3631 0.4053 11 6 2.0180 -7.2391 1.4976 12 6 2.0711 -8.5874 1.2867 13 6 2.1187 -9.0999 -0.0029 14 6 2.1138 -8.2576 -1.0940 15 6 2.0612 -6.8807 -0.9044 16 7 2.0367 -5.8097 -1.7718 17 6 2.0636 -5.8897 -3.1382 18 1 2.6504 -5.1850 -3.7088 19 6 1.3357 -6.8776 -3.7912 20 7 0.4888 -7.6225 -3.1180 21 14 1.5620 -7.1459 -5.6259 22 1 2.9452 -7.6173 -5.8903 23 1 0.5922 -8.1655 -6.1004 24 1 1.3286 -5.8680 -6.3455 25 6 2.0285 -2.2643 0.6970 26 6 2.0861 -0.8074 1.2026 27 1 3.1132 -0.5153 1.4212 28 8 1.2584 -0.6391 2.3552 29 1 -0.3634 0.4524 0.9226 30 1 -0.3633 0.5728 -0.8532 31 1 -0.3633 -1.0253 -0.0696 32 1 3.1629 1.4035 -0.0696 33 1 1.6698 1.9732 -0.8533 34 1 1.7823 1.9303 0.9227 35 1 3.1254 -0.5271 -1.3985 36 1 1.4765 -0.6458 -2.0857 37 1 1.9202 -4.2474 1.1085 38 1 1.9808 -6.8496 2.5042 39 1 2.0761 -9.2612 2.1308 40 1 2.1608 -10.1687 -0.1525 41 1 2.1514 -8.6656 -2.0933 42 1 0.0348 -8.3585 -3.5575 43 1 1.1219 -2.7475 1.0611 44 1 2.9049 -2.8134 1.0412 45 1 1.5559 -1.1367 3.1291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619237772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:33 Heat of formation + Delta-G solvation = -10.448857 kcal Electronic energy + Delta-G solvation = -28752.682340 eV Core-core repulsion = 24928.968950 eV Total energy + Delta-G solvation = -3823.713389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66725 -39.77693 -37.74403 -35.84224 -35.43180 -33.97100 -33.20300 -30.61762 -28.95477 -28.67510 -28.49317 -27.38528 -26.08711 -24.79961 -23.47412 -22.11043 -20.82942 -19.83013 -19.34847 -18.99456 -17.68451 -17.37091 -16.13489 -16.03922 -15.50122 -15.24301 -14.79152 -14.64540 -14.45219 -14.17373 -13.88429 -13.52440 -13.23057 -13.13442 -12.88193 -12.85891 -12.57615 -12.35968 -12.19232 -12.16747 -11.90415 -11.70043 -11.53539 -11.29405 -11.15561 -11.10912 -10.95207 -10.71202 -10.55440 -10.41493 -10.21853 -10.10543 -9.71059 -9.18684 -9.06087 -8.58464 -8.31258 -7.14640 -6.79841 -6.45351 -4.40823 1.85472 2.81114 3.06236 3.09422 3.10080 3.17019 3.18763 3.89290 4.02787 4.25700 4.27785 4.44665 4.72726 4.82128 4.84863 5.02760 5.13899 5.20014 5.22708 5.42176 5.57413 5.63357 5.68627 5.78614 5.84732 5.86592 5.88801 5.92680 6.00344 6.05064 6.12857 6.14707 6.33961 6.37825 6.53901 6.62541 6.75801 6.91251 7.07000 7.14322 7.22187 7.47616 7.52163 7.61723 7.72821 7.84082 8.01466 8.13057 8.48648 8.73529 8.96246 9.36201 10.29825 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.004507 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.618966 B = 6210.705300 C = 8035.403178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.134 4.134 4 C 0.119 3.881 5 N -0.614 5.614 6 C 0.603 3.397 7 O -0.528 6.528 8 C -0.020 4.020 9 C -0.219 4.219 10 C -0.127 4.127 11 C -0.095 4.095 12 C -0.155 4.155 13 C -0.158 4.158 14 C -0.040 4.040 15 C 0.089 3.911 16 N -0.233 5.233 17 C -0.329 4.329 18 H 0.113 0.887 19 C 0.048 3.952 20 N -0.831 5.831 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.264 1.264 25 C 0.070 3.930 26 C 0.098 3.902 27 H 0.073 0.927 28 O -0.552 6.552 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.281 0.719 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 10.246 8.903 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.070 4.070 3 C -0.192 4.192 4 C -0.004 4.004 5 N -0.351 5.351 6 C 0.396 3.604 7 O -0.404 6.404 8 C -0.137 4.137 9 C -0.246 4.246 10 C -0.131 4.131 11 C -0.114 4.114 12 C -0.174 4.174 13 C -0.179 4.179 14 C -0.059 4.059 15 C -0.025 4.025 16 N 0.107 4.893 17 C -0.458 4.458 18 H 0.131 0.869 19 C -0.163 4.163 20 N -0.461 5.461 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.054 4.054 26 C 0.038 3.962 27 H 0.091 0.909 28 O -0.357 6.357 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.155 0.845 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.604 10.521 7.306 13.071 hybrid contribution 0.173 -0.724 -0.415 0.852 sum 2.777 9.797 6.891 12.295 Atomic orbital electron populations 1.21555 0.92599 1.02503 1.01732 1.21838 0.97365 0.94945 0.92891 1.21727 1.00663 0.94341 1.02457 1.22315 1.00727 0.80026 0.97311 1.47842 1.75783 1.05489 1.05995 1.16930 0.75918 0.82616 0.84978 1.90790 1.49566 1.85846 1.14189 1.19479 1.16192 0.86976 0.91059 1.20911 1.15503 0.94194 0.94040 1.17993 1.09217 0.93114 0.92781 1.19982 1.02677 0.92630 0.96136 1.20263 1.06272 0.94677 0.96148 1.20554 1.06975 0.97947 0.92385 1.20216 0.97112 0.90193 0.98411 1.18187 1.06994 0.89457 0.87898 1.39898 1.42950 1.01620 1.04852 1.19954 1.29118 1.17872 0.78847 0.86924 1.25674 0.93095 0.96041 1.01499 1.69980 1.21194 1.16435 1.38487 0.85853 0.78724 0.78899 0.80657 1.19157 1.20250 1.18830 1.23100 1.03064 0.97357 0.81861 1.22929 0.93631 0.93537 0.86119 0.90905 1.86526 1.54663 1.72659 1.21860 0.91526 0.92820 0.92269 0.92383 0.92045 0.91782 0.91488 0.89930 0.84511 0.88034 0.88092 0.87797 0.86448 0.90856 0.89796 0.90382 0.77313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.18 37.16 0.30 -1.22 16 2 C -0.07 -0.78 0.89 -152.24 -0.13 -0.91 16 3 C -0.13 -1.18 8.68 37.16 0.32 -0.86 16 4 C 0.12 1.66 5.87 -2.41 -0.01 1.65 16 5 N -0.61 -10.53 3.31 -171.84 -0.57 -11.10 16 6 C 0.60 13.68 7.81 -12.76 -0.10 13.58 16 7 O -0.53 -13.64 15.31 5.22 0.08 -13.56 16 8 C -0.02 -0.48 6.75 -82.25 -0.56 -1.04 16 9 C -0.22 -4.73 9.30 -39.02 -0.36 -5.10 16 10 C -0.13 -2.94 6.16 -106.89 -0.66 -3.60 16 11 C -0.10 -1.92 10.06 -39.51 -0.40 -2.32 16 12 C -0.15 -3.00 9.97 -39.95 -0.40 -3.40 16 13 C -0.16 -3.30 10.02 -39.50 -0.40 -3.69 16 14 C -0.04 -0.97 8.42 -39.41 -0.33 -1.30 16 15 C 0.09 2.31 6.06 -83.83 -0.51 1.81 16 16 N -0.23 -6.31 2.84 -56.08 -0.16 -6.47 16 17 C -0.33 -9.12 8.75 -15.00 -0.13 -9.25 16 18 H 0.11 3.17 7.04 -52.49 -0.37 2.80 16 19 C 0.05 1.25 4.77 -17.47 -0.08 1.17 16 20 N -0.83 -22.34 10.22 55.50 0.57 -21.77 16 21 Si 0.93 20.22 29.56 -169.99 -5.03 15.19 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.26 -5.80 7.11 56.52 0.40 -5.39 16 25 C 0.07 0.94 4.43 -3.06 -0.01 0.93 16 26 C 0.10 1.02 3.56 -24.90 -0.09 0.93 16 27 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 28 O -0.55 -5.32 12.16 -35.23 -0.43 -5.75 16 29 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.85 7.91 -51.93 -0.41 0.44 16 32 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 36 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 37 H 0.14 2.38 4.21 -52.49 -0.22 2.16 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.12 2.94 6.33 -52.49 -0.33 2.60 16 42 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.08 1.20 6.80 -51.93 -0.35 0.84 16 44 H 0.08 1.00 6.90 -51.93 -0.36 0.65 16 45 H 0.38 2.12 9.12 45.56 0.42 2.54 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -32.69 359.15 -9.02 -41.72 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.35 Total: 8.96 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.55 Total: -12.63 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: -0.16 Total: -39.34 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.35 Total: -19.31 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.69 -9.02 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619237772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.268 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds