Wall clock time and date at job start Tue Mar 31 2020 15:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88425 * 2 1 4 4 C 1.55129 * 111.19620 * 236.06781 * 2 1 3 5 5 N 1.47430 * 104.71815 * 279.19206 * 4 2 1 6 6 C 1.34773 * 125.64795 * 155.81792 * 5 4 2 7 7 O 1.21669 * 120.00175 * 355.37593 * 6 5 4 8 8 C 1.46888 * 119.99955 * 175.10306 * 6 5 4 9 9 C 1.36122 * 125.43797 * 6.06772 * 8 6 5 10 10 C 1.41705 * 107.74795 * 180.02562 * 9 8 6 11 11 C 1.40020 * 133.34933 * 180.02562 * 10 9 8 12 12 C 1.36575 * 119.82886 * 179.97438 * 11 10 9 13 13 C 1.38852 * 120.60304 * 359.97438 * 12 11 10 14 14 C 1.37839 * 120.63222 * 0.02562 * 13 12 11 15 15 C 1.39095 * 119.81340 * 0.02562 * 14 13 12 16 16 N 1.37838 * 133.16126 * 180.37337 * 15 14 13 17 17 C 1.36897 * 125.61909 * 359.89362 * 16 15 14 18 18 H 1.08001 * 119.99612 * 220.09367 * 17 16 15 19 19 C 1.39008 * 120.00306 * 40.10117 * 17 16 15 20 20 N 1.31347 * 119.99678 * 8.83110 * 19 17 16 21 21 Si 1.86794 * 120.00032 * 188.83941 * 19 17 16 22 22 H 1.48505 * 109.47229 * 64.99281 * 21 19 17 23 23 H 1.48501 * 109.47329 * 184.99565 * 21 19 17 24 24 H 1.48502 * 109.47154 * 304.99676 * 21 19 17 25 25 C 1.47026 * 108.70431 * 335.55091 * 5 4 2 26 26 C 1.54323 * 107.26883 * 1.28832 * 25 5 4 27 27 H 1.08998 * 110.72318 * 263.82887 * 26 25 5 28 28 O 1.42897 * 110.72064 * 140.73427 * 26 25 5 29 29 H 1.08996 * 109.47551 * 296.12236 * 1 2 3 30 30 H 1.08999 * 109.46829 * 56.12618 * 1 2 3 31 31 H 1.09004 * 109.46979 * 176.11868 * 1 2 3 32 32 H 1.09003 * 109.47389 * 183.88282 * 3 2 1 33 33 H 1.09007 * 109.47232 * 303.87375 * 3 2 1 34 34 H 1.09000 * 109.47570 * 63.88065 * 3 2 1 35 35 H 1.09000 * 110.50052 * 160.35161 * 4 2 1 36 36 H 1.08999 * 110.34378 * 37.94758 * 4 2 1 37 37 H 1.07997 * 126.12454 * 359.97438 * 9 8 6 38 38 H 1.08001 * 120.08652 * 359.97438 * 11 10 9 39 39 H 1.08003 * 119.69452 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.68591 * 179.97438 * 13 12 11 41 41 H 1.07999 * 120.09815 * 179.97438 * 14 13 12 42 42 H 0.97005 * 119.99404 * 184.98685 * 20 19 17 43 43 H 1.08999 * 109.88400 * 120.70672 * 25 5 4 44 44 H 1.09000 * 109.87855 * 241.72216 * 25 5 4 45 45 H 0.96700 * 113.99893 * 65.37385 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0909 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9472 -3.2835 -1.5926 7 8 1.8625 -3.1220 -2.7955 8 6 1.9829 -4.6418 -1.0347 9 6 1.9636 -4.9515 0.2907 10 6 2.0119 -6.3631 0.4053 11 6 2.0180 -7.2391 1.4976 12 6 2.0711 -8.5874 1.2867 13 6 2.1187 -9.0999 -0.0029 14 6 2.1138 -8.2576 -1.0940 15 6 2.0612 -6.8807 -0.9044 16 7 2.0367 -5.8097 -1.7718 17 6 2.0636 -5.8897 -3.1382 18 1 2.6504 -5.1850 -3.7088 19 6 1.3357 -6.8776 -3.7912 20 7 0.4888 -7.6225 -3.1180 21 14 1.5620 -7.1459 -5.6259 22 1 2.9452 -7.6173 -5.8903 23 1 0.5922 -8.1655 -6.1004 24 1 1.3286 -5.8680 -6.3455 25 6 2.0285 -2.2643 0.6970 26 6 2.0861 -0.8074 1.2026 27 1 3.1132 -0.5153 1.4212 28 8 1.2584 -0.6391 2.3552 29 1 -0.3634 0.4524 0.9226 30 1 -0.3633 0.5728 -0.8532 31 1 -0.3633 -1.0253 -0.0696 32 1 3.1629 1.4035 -0.0696 33 1 1.6698 1.9732 -0.8533 34 1 1.7823 1.9303 0.9227 35 1 3.1254 -0.5271 -1.3985 36 1 1.4765 -0.6458 -2.0857 37 1 1.9202 -4.2474 1.1085 38 1 1.9808 -6.8496 2.5042 39 1 2.0761 -9.2612 2.1308 40 1 2.1608 -10.1687 -0.1525 41 1 2.1514 -8.6656 -2.0933 42 1 0.0348 -8.3585 -3.5575 43 1 1.1219 -2.7475 1.0611 44 1 2.9049 -2.8134 1.0412 45 1 1.5559 -1.1367 3.1291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619237772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:32 Heat of formation + Delta-G solvation = -32.245831 kcal Electronic energy + Delta-G solvation = -28753.627528 eV Core-core repulsion = 24928.968950 eV Total energy + Delta-G solvation = -3824.658577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.30718 -41.09072 -39.23419 -37.47107 -36.48555 -35.63963 -34.59726 -32.40830 -30.68241 -30.09848 -29.77732 -28.25696 -27.44499 -26.64241 -24.76819 -23.53972 -22.54194 -21.51013 -20.71208 -20.23475 -19.43119 -18.20659 -17.70265 -17.53312 -17.16047 -16.81125 -16.42684 -16.16909 -15.72985 -15.45656 -15.16078 -15.01642 -14.62949 -14.56859 -14.36935 -14.21752 -14.00922 -13.82092 -13.53561 -13.34410 -13.17318 -13.10003 -12.91353 -12.82899 -12.76750 -12.37200 -12.21117 -12.04774 -12.00338 -11.89778 -11.48588 -11.26475 -11.14143 -10.94927 -10.73807 -10.36597 -9.73289 -8.97656 -8.61503 -8.26776 -6.41773 0.13487 1.11660 1.26514 1.36195 1.38545 1.43480 1.73573 2.12232 2.46104 2.88746 2.98978 3.25133 3.32570 3.39925 3.49444 3.85259 3.96663 4.13852 4.23583 4.27772 4.34125 4.44692 4.51481 4.61784 4.62682 4.71714 4.74615 4.83171 4.87009 4.90126 4.99081 5.02511 5.04829 5.08915 5.14820 5.19409 5.30017 5.37395 5.40362 5.47075 5.48102 5.75350 5.92553 5.99250 6.24815 6.28549 6.45434 6.59793 6.93973 6.94981 7.21916 7.46862 8.38430 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.004507 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.618966 B = 6210.705300 C = 8035.403178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.128 4.128 4 C 0.111 3.889 5 N -0.605 5.605 6 C 0.594 3.406 7 O -0.579 6.579 8 C -0.053 4.053 9 C -0.192 4.192 10 C -0.153 4.153 11 C -0.086 4.086 12 C -0.154 4.154 13 C -0.141 4.141 14 C -0.084 4.084 15 C 0.064 3.936 16 N -0.270 5.270 17 C -0.360 4.360 18 H 0.089 0.911 19 C 0.009 3.991 20 N -0.861 5.861 21 Si 0.997 3.003 22 H -0.256 1.256 23 H -0.262 1.262 24 H -0.273 1.273 25 C 0.060 3.940 26 C 0.115 3.885 27 H 0.103 0.897 28 O -0.558 6.558 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.181 0.819 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.283 0.717 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 10.954 12.570 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.186 4.186 4 C -0.011 4.011 5 N -0.340 5.340 6 C 0.385 3.615 7 O -0.460 6.460 8 C -0.169 4.169 9 C -0.219 4.219 10 C -0.158 4.158 11 C -0.105 4.105 12 C -0.173 4.173 13 C -0.161 4.161 14 C -0.104 4.104 15 C -0.051 4.051 16 N 0.068 4.932 17 C -0.488 4.488 18 H 0.107 0.893 19 C -0.198 4.198 20 N -0.492 5.492 21 Si 0.817 3.183 22 H -0.181 1.181 23 H -0.186 1.186 24 H -0.198 1.198 25 C -0.062 4.062 26 C 0.055 3.945 27 H 0.121 0.879 28 O -0.366 6.366 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.197 0.803 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.150 0.850 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.293 11.264 11.050 16.119 hybrid contribution -0.038 -0.918 -1.285 1.580 sum 3.255 10.345 9.765 14.594 Atomic orbital electron populations 1.21523 0.93530 1.00659 1.02384 1.21839 0.96569 0.96288 0.91848 1.21701 1.01485 0.92166 1.03224 1.22603 1.01628 0.78649 0.98193 1.47832 1.73153 1.05475 1.07501 1.17009 0.76054 0.83487 0.84909 1.90740 1.52313 1.86610 1.16295 1.20127 1.17013 0.87410 0.92312 1.21441 1.12063 0.94521 0.93921 1.18510 1.10277 0.94162 0.92811 1.20481 1.00330 0.92617 0.97049 1.20763 1.04636 0.95270 0.96640 1.21002 1.03739 0.99049 0.92331 1.20270 1.00918 0.90444 0.98732 1.18761 1.07103 0.90064 0.89154 1.40095 1.45536 1.02791 1.04814 1.19850 1.30374 1.18632 0.79989 0.89329 1.26473 0.92459 0.95441 1.05427 1.70067 1.22143 1.17077 1.39907 0.84968 0.79395 0.78495 0.75428 1.18061 1.18604 1.19792 1.23390 1.03153 1.00382 0.79298 1.22806 0.95091 0.90531 0.86074 0.87944 1.86497 1.54921 1.72948 1.22257 0.90528 0.92525 0.95278 0.90947 0.91721 0.90660 0.89785 0.92060 0.80256 0.83720 0.83467 0.84996 0.88705 0.90708 0.90522 0.89146 0.74950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.18 71.98 0.59 -2.27 16 2 C -0.06 -1.31 0.89 -50.71 -0.04 -1.36 16 3 C -0.13 -1.83 8.68 71.98 0.62 -1.20 16 4 C 0.11 3.08 5.87 86.93 0.51 3.59 16 5 N -0.61 -20.94 3.31 -815.80 -2.70 -23.64 16 6 C 0.59 28.41 7.81 86.51 0.68 29.08 16 7 O -0.58 -32.38 15.31 -4.25 -0.07 -32.45 16 8 C -0.05 -2.71 6.75 39.91 0.27 -2.44 16 9 C -0.19 -8.21 9.30 22.63 0.21 -8.00 16 10 C -0.15 -7.00 6.16 -21.34 -0.13 -7.13 16 11 C -0.09 -3.17 10.06 22.31 0.22 -2.94 16 12 C -0.15 -5.39 9.97 22.03 0.22 -5.17 16 13 C -0.14 -5.66 10.02 22.32 0.22 -5.44 16 14 C -0.08 -4.18 8.42 22.38 0.19 -4.00 16 15 C 0.06 3.40 6.06 39.06 0.24 3.64 16 16 N -0.27 -15.54 2.84 -331.34 -0.94 -16.48 16 17 C -0.36 -21.59 8.75 84.09 0.74 -20.86 16 18 H 0.09 5.51 7.04 -2.91 -0.02 5.49 16 19 C 0.01 0.51 4.77 84.95 0.40 0.92 16 20 N -0.86 -48.99 10.22 21.67 0.22 -48.77 16 21 Si 1.00 44.04 29.56 68.60 2.03 46.07 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 C 0.06 1.50 4.43 86.73 0.38 1.88 16 26 C 0.11 2.00 3.56 31.78 0.11 2.11 16 27 H 0.10 1.29 8.04 -2.39 -0.02 1.27 16 28 O -0.56 -8.53 12.16 -148.98 -1.81 -10.34 16 29 H 0.08 1.61 7.53 -2.39 -0.02 1.59 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.03 0.83 7.91 -2.39 -0.02 0.81 16 32 H 0.07 0.86 8.07 -2.39 -0.02 0.84 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 2.06 7.99 -2.39 -0.02 2.04 16 36 H 0.06 1.96 7.91 -2.39 -0.02 1.94 16 37 H 0.18 5.79 4.21 -2.91 -0.01 5.77 16 38 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.09 5.06 6.33 -2.91 -0.02 5.04 16 42 H 0.28 14.87 8.31 -92.70 -0.77 14.10 16 43 H 0.08 2.04 6.80 -2.39 -0.02 2.02 16 44 H 0.09 2.05 6.90 -2.39 -0.02 2.04 16 45 H 0.40 2.65 9.12 -74.06 -0.68 1.97 16 Total: -1.00 -79.19 359.15 2.51 -76.68 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.35 Total: 28.51 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 5.43 Total: -19.57 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -3.42 Total: -88.90 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.88 Total: -42.79 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -79.19 2.51 -76.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619237772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.432 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds