Wall clock time and date at job start Tue Mar 31 2020 15:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35446 * 126.77786 * 2 1 4 4 C 1.41379 * 103.98827 * 180.14032 * 3 2 1 5 5 C 1.50699 * 126.80368 * 179.88503 * 4 3 2 6 6 H 1.08993 * 110.45999 * 32.29726 * 5 4 3 7 7 C 1.54378 * 110.41379 * 269.88311 * 5 4 3 8 8 C 1.54264 * 105.06233 * 217.37210 * 7 5 4 9 9 C 1.54380 * 105.05600 * 359.97438 * 8 7 5 10 10 N 1.48552 * 104.59962 * 23.85525 * 9 8 7 11 11 C 1.46901 * 111.00418 * 200.96046 * 10 9 8 12 12 C 1.50704 * 109.46965 * 285.42151 * 11 10 9 13 13 C 1.38291 * 119.93353 * 89.99552 * 12 11 10 14 14 C 1.38102 * 120.07287 * 179.97438 * 13 12 11 15 15 C 1.38885 * 119.92439 * 0.02562 * 14 13 12 16 16 O 1.35749 * 120.06407 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00532 * 5.53097 * 16 15 14 18 18 H 1.08004 * 119.99637 * 354.94802 * 17 16 15 19 19 C 1.38650 * 120.00451 * 174.94170 * 17 16 15 20 20 N 1.31563 * 119.99897 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47246 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47151 * 60.00115 * 21 19 17 24 24 H 1.48501 * 109.47141 * 300.00219 * 21 19 17 25 25 C 1.38878 * 119.86442 * 0.25280 * 15 14 13 26 26 C 1.38094 * 119.93045 * 359.49209 * 25 15 14 27 27 N 1.30174 * 106.39228 * 359.62442 * 4 3 2 28 28 O 1.20926 * 111.60924 * 0.24131 * 27 4 3 29 29 H 1.08999 * 109.46931 * 180.30437 * 1 2 3 30 30 H 1.09005 * 109.46906 * 300.29931 * 1 2 3 31 31 H 1.08996 * 109.46998 * 60.29730 * 1 2 3 32 32 H 1.08003 * 128.01031 * 0.02562 * 3 2 1 33 33 H 1.09001 * 110.31898 * 336.26413 * 7 5 4 34 34 H 1.08995 * 110.32228 * 98.47039 * 7 5 4 35 35 H 1.08994 * 110.32280 * 118.89252 * 8 7 5 36 36 H 1.08999 * 110.31876 * 241.00001 * 8 7 5 37 37 H 1.09002 * 110.41103 * 265.07477 * 9 8 7 38 38 H 1.09006 * 110.41014 * 142.63893 * 9 8 7 39 39 H 1.08993 * 109.47591 * 165.41659 * 11 10 9 40 40 H 1.09002 * 109.46999 * 45.41424 * 11 10 9 41 41 H 1.07999 * 119.96624 * 359.97438 * 13 12 11 42 42 H 1.07994 * 120.03945 * 179.97438 * 14 13 12 43 43 H 0.96993 * 120.00003 * 359.97438 * 20 19 17 44 44 H 1.07997 * 120.03571 * 179.72341 * 25 15 14 45 45 H 1.07998 * 119.96774 * 180.27428 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0034 5 6 4.9211 1.3000 -0.0072 6 1 4.8143 2.2375 0.5383 7 6 5.3831 1.5694 -1.4554 8 6 6.9182 1.4220 -1.4205 9 6 7.2547 1.0765 0.0460 10 7 6.0069 0.4775 0.5854 11 6 5.9802 0.5482 2.0524 12 6 6.9249 -0.4786 2.6221 13 6 8.2455 -0.1443 2.8602 14 6 9.1135 -1.0828 3.3826 15 6 8.6590 -2.3636 3.6684 16 8 9.5099 -3.2885 4.1815 17 6 10.7517 -2.8693 4.4974 18 1 11.0566 -1.8598 4.2639 19 6 11.6375 -3.7339 5.1222 20 7 11.2663 -4.9637 5.4063 21 14 13.3578 -3.1527 5.5605 22 1 14.1022 -4.2586 6.2149 23 1 13.2684 -1.9977 6.4897 24 1 14.0707 -2.7400 4.3249 25 6 7.3336 -2.6980 3.4227 26 6 6.4693 -1.7535 2.9051 27 7 3.4764 -0.7564 0.0032 28 8 2.3095 -1.0737 0.0052 29 1 -0.3633 -1.0276 0.0055 30 1 -0.3633 0.5185 0.8873 31 1 -0.3633 0.5092 -0.8926 32 1 2.0346 2.1271 0.0004 33 1 4.9477 0.8361 -2.1342 34 1 5.1064 2.5789 -1.7594 35 1 7.2363 0.6164 -2.0822 36 1 7.3951 2.3587 -1.7091 37 1 7.5131 1.9793 0.5996 38 1 8.0717 0.3562 0.0891 39 1 4.9693 0.3484 2.4076 40 1 6.2882 1.5432 2.3739 41 1 8.5984 0.8518 2.6374 42 1 10.1448 -0.8213 3.5680 43 1 10.3729 -5.2654 5.1790 44 1 6.9783 -3.6945 3.6397 45 1 5.4374 -2.0115 2.7180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731210193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:07 Heat of formation + Delta-G solvation = 59.520632 kcal Electronic energy + Delta-G solvation = -27229.225433 eV Core-core repulsion = 23408.546148 eV Total energy + Delta-G solvation = -3820.679285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.99151 -39.55703 -38.75636 -36.61586 -34.33002 -33.37256 -32.84753 -31.99811 -30.18901 -29.11643 -28.78098 -27.96631 -25.31171 -24.47175 -23.36690 -22.43286 -21.92231 -21.07101 -20.30048 -19.50332 -18.31231 -17.67777 -17.35324 -16.79558 -16.01152 -15.90274 -15.11552 -14.79222 -14.31102 -14.23866 -13.96643 -13.78802 -13.65508 -13.61890 -13.61126 -13.33588 -12.99025 -12.83212 -12.70674 -12.58219 -12.33112 -11.99952 -11.47158 -11.30271 -11.14154 -11.10826 -11.00002 -10.75620 -10.66236 -10.62081 -10.27931 -10.23905 -10.07087 -9.42864 -9.36043 -8.74336 -8.48064 -8.16293 -7.19620 -6.73766 -4.02605 1.37599 2.12380 2.22268 2.28711 3.00467 3.24974 3.29868 3.46729 3.78950 4.02237 4.14388 4.41996 4.48450 4.66490 4.68561 4.80708 4.86475 4.98177 5.02948 5.07547 5.12700 5.20300 5.23280 5.28850 5.32001 5.40253 5.44552 5.52806 5.61261 5.64933 5.72196 5.77329 5.82354 5.86989 5.91876 5.98253 6.07534 6.20615 6.41661 6.69131 6.79366 6.88007 7.02711 7.14307 7.30611 7.40199 7.60235 7.78916 8.29487 8.43842 8.95927 9.65639 10.70394 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.002543 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.494410 B =11006.320025 C =12004.904071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.041 4.041 3 C -0.235 4.235 4 C 0.029 3.971 5 C 0.136 3.864 6 H 0.070 0.930 7 C -0.110 4.110 8 C -0.123 4.123 9 C 0.036 3.964 10 N -0.489 5.489 11 C 0.106 3.894 12 C -0.172 4.172 13 C -0.064 4.064 14 C -0.231 4.231 15 C 0.159 3.841 16 O -0.203 6.203 17 C -0.471 4.471 18 H 0.083 0.917 19 C 0.009 3.991 20 N -0.882 5.882 21 Si 1.096 2.904 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.196 4.196 26 C -0.048 4.048 27 N -0.326 5.326 28 O 0.099 5.901 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.167 0.833 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.282 0.718 44 H 0.114 0.886 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.470 16.560 -12.670 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.257 4.257 4 C -0.131 4.131 5 C 0.026 3.974 6 H 0.088 0.912 7 C -0.149 4.149 8 C -0.161 4.161 9 C -0.092 4.092 10 N -0.213 5.213 11 C -0.021 4.021 12 C -0.174 4.174 13 C -0.083 4.083 14 C -0.250 4.250 15 C 0.106 3.894 16 O -0.108 6.108 17 C -0.547 4.547 18 H 0.100 0.900 19 C -0.196 4.196 20 N -0.514 5.514 21 Si 0.920 3.080 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.215 4.215 26 C -0.067 4.067 27 N -0.027 5.027 28 O 0.030 5.970 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.185 0.815 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.132 0.868 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.206 14.190 -12.012 24.663 hybrid contribution -1.724 2.301 -0.466 2.912 sum -17.930 16.490 -12.478 27.370 Atomic orbital electron populations 1.20306 0.84334 1.04614 1.03819 1.24485 0.96369 0.86491 1.03142 1.22307 0.91386 1.00816 1.11204 1.23214 0.95939 0.90152 1.03759 1.20892 0.86966 0.92974 0.96559 0.91196 1.22279 0.96186 1.01674 0.94787 1.22305 0.94961 1.01775 0.97089 1.23121 0.93823 0.98161 0.94084 1.65347 1.01054 1.48013 1.06920 1.20927 0.98671 0.96159 0.86334 1.18986 0.94343 0.95373 1.08669 1.20564 0.92635 0.97745 0.97344 1.21108 1.00841 0.94177 1.08867 1.19240 0.89785 0.88483 0.91901 1.83666 1.22745 1.34184 1.70175 1.22186 0.87228 1.01586 1.43724 0.89978 1.26528 1.04878 0.93844 0.94374 1.70567 1.22593 1.16186 1.42087 0.83111 0.72308 0.75712 0.76883 1.19784 1.20784 1.20766 1.20185 0.91527 1.00338 1.09492 1.20438 0.98123 0.92093 0.96058 1.74026 0.95455 1.16120 1.17101 1.84937 1.11679 1.33221 1.67151 0.89934 0.89370 0.89410 0.81547 0.90978 0.90977 0.90798 0.91197 0.93804 0.89285 0.91335 0.94592 0.87937 0.85578 0.90799 0.86787 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.01 0.38 0.04 16 2 C -0.04 -0.37 7.49 -35.30 -0.26 -0.64 16 3 C -0.24 -2.19 11.06 -39.38 -0.44 -2.62 16 4 C 0.03 0.36 5.80 -82.10 -0.48 -0.12 16 5 C 0.14 1.56 2.78 -67.23 -0.19 1.37 16 6 H 0.07 0.70 7.99 -51.93 -0.42 0.29 16 7 C -0.11 -1.08 6.54 -25.35 -0.17 -1.25 16 8 C -0.12 -1.24 7.00 -25.35 -0.18 -1.42 16 9 C 0.04 0.45 5.70 -2.19 -0.01 0.43 16 10 N -0.49 -6.90 4.89 -224.96 -1.10 -8.00 16 11 C 0.11 1.59 4.92 -4.97 -0.02 1.56 16 12 C -0.17 -3.15 5.20 -104.57 -0.54 -3.69 16 13 C -0.06 -1.22 8.92 -39.61 -0.35 -1.57 16 14 C -0.23 -5.23 9.17 -39.39 -0.36 -5.59 16 15 C 0.16 4.01 6.65 -39.10 -0.26 3.75 16 16 O -0.20 -5.93 9.16 0.07 0.00 -5.93 16 17 C -0.47 -13.60 9.49 30.88 0.29 -13.31 16 18 H 0.08 2.23 5.20 -52.48 -0.27 1.95 16 19 C 0.01 0.25 5.49 -17.51 -0.10 0.16 16 20 N -0.88 -26.93 13.70 55.48 0.76 -26.17 16 21 Si 1.10 24.16 29.92 -169.99 -5.09 19.07 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.20 -4.41 9.99 -39.40 -0.39 -4.80 16 26 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 27 N -0.33 -4.77 11.93 33.42 0.40 -4.37 16 28 O 0.10 1.25 11.20 17.17 0.19 1.44 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.50 7.75 -51.93 -0.40 0.10 16 38 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 39 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 40 H 0.04 0.49 7.71 -51.93 -0.40 0.09 16 41 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 43 H 0.28 8.82 7.97 -40.82 -0.33 8.50 16 44 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 45 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -33.64 375.25 -9.00 -42.64 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.35 Total: 4.69 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -3.46 Total: -29.03 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.06 Total: -38.54 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.19 Total: -4.49 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.09 Total: 19.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.64 -9.00 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731210193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.161 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds