Wall clock time and date at job start Tue Mar 31 2020 15:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35446 * 126.77786 * 2 1 4 4 C 1.41379 * 103.98827 * 180.14032 * 3 2 1 5 5 C 1.50699 * 126.80368 * 179.88503 * 4 3 2 6 6 H 1.08993 * 110.45999 * 32.29726 * 5 4 3 7 7 C 1.54378 * 110.41379 * 269.88311 * 5 4 3 8 8 C 1.54264 * 105.06233 * 217.37210 * 7 5 4 9 9 C 1.54380 * 105.05600 * 359.97438 * 8 7 5 10 10 N 1.48552 * 104.59962 * 23.85525 * 9 8 7 11 11 C 1.46901 * 111.00418 * 200.96046 * 10 9 8 12 12 C 1.50704 * 109.46965 * 285.42151 * 11 10 9 13 13 C 1.38291 * 119.93353 * 89.99552 * 12 11 10 14 14 C 1.38102 * 120.07287 * 179.97438 * 13 12 11 15 15 C 1.38885 * 119.92439 * 0.02562 * 14 13 12 16 16 O 1.35749 * 120.06407 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00532 * 5.53097 * 16 15 14 18 18 H 1.08004 * 119.99637 * 354.94802 * 17 16 15 19 19 C 1.38650 * 120.00451 * 174.94170 * 17 16 15 20 20 N 1.31563 * 119.99897 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47246 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47151 * 60.00115 * 21 19 17 24 24 H 1.48501 * 109.47141 * 300.00219 * 21 19 17 25 25 C 1.38878 * 119.86442 * 0.25280 * 15 14 13 26 26 C 1.38094 * 119.93045 * 359.49209 * 25 15 14 27 27 N 1.30174 * 106.39228 * 359.62442 * 4 3 2 28 28 O 1.20926 * 111.60924 * 0.24131 * 27 4 3 29 29 H 1.08999 * 109.46931 * 180.30437 * 1 2 3 30 30 H 1.09005 * 109.46906 * 300.29931 * 1 2 3 31 31 H 1.08996 * 109.46998 * 60.29730 * 1 2 3 32 32 H 1.08003 * 128.01031 * 0.02562 * 3 2 1 33 33 H 1.09001 * 110.31898 * 336.26413 * 7 5 4 34 34 H 1.08995 * 110.32228 * 98.47039 * 7 5 4 35 35 H 1.08994 * 110.32280 * 118.89252 * 8 7 5 36 36 H 1.08999 * 110.31876 * 241.00001 * 8 7 5 37 37 H 1.09002 * 110.41103 * 265.07477 * 9 8 7 38 38 H 1.09006 * 110.41014 * 142.63893 * 9 8 7 39 39 H 1.08993 * 109.47591 * 165.41659 * 11 10 9 40 40 H 1.09002 * 109.46999 * 45.41424 * 11 10 9 41 41 H 1.07999 * 119.96624 * 359.97438 * 13 12 11 42 42 H 1.07994 * 120.03945 * 179.97438 * 14 13 12 43 43 H 0.96993 * 120.00003 * 359.97438 * 20 19 17 44 44 H 1.07997 * 120.03571 * 179.72341 * 25 15 14 45 45 H 1.07998 * 119.96774 * 180.27428 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0034 5 6 4.9211 1.3000 -0.0072 6 1 4.8143 2.2375 0.5383 7 6 5.3831 1.5694 -1.4554 8 6 6.9182 1.4220 -1.4205 9 6 7.2547 1.0765 0.0460 10 7 6.0069 0.4775 0.5854 11 6 5.9802 0.5482 2.0524 12 6 6.9249 -0.4786 2.6221 13 6 8.2455 -0.1443 2.8602 14 6 9.1135 -1.0828 3.3826 15 6 8.6590 -2.3636 3.6684 16 8 9.5099 -3.2885 4.1815 17 6 10.7517 -2.8693 4.4974 18 1 11.0566 -1.8598 4.2639 19 6 11.6375 -3.7339 5.1222 20 7 11.2663 -4.9637 5.4063 21 14 13.3578 -3.1527 5.5605 22 1 14.1022 -4.2586 6.2149 23 1 13.2684 -1.9977 6.4897 24 1 14.0707 -2.7400 4.3249 25 6 7.3336 -2.6980 3.4227 26 6 6.4693 -1.7535 2.9051 27 7 3.4764 -0.7564 0.0032 28 8 2.3095 -1.0737 0.0052 29 1 -0.3633 -1.0276 0.0055 30 1 -0.3633 0.5185 0.8873 31 1 -0.3633 0.5092 -0.8926 32 1 2.0346 2.1271 0.0004 33 1 4.9477 0.8361 -2.1342 34 1 5.1064 2.5789 -1.7594 35 1 7.2363 0.6164 -2.0822 36 1 7.3951 2.3587 -1.7091 37 1 7.5131 1.9793 0.5996 38 1 8.0717 0.3562 0.0891 39 1 4.9693 0.3484 2.4076 40 1 6.2882 1.5432 2.3739 41 1 8.5984 0.8518 2.6374 42 1 10.1448 -0.8213 3.5680 43 1 10.3729 -5.2654 5.1790 44 1 6.9783 -3.6945 3.6397 45 1 5.4374 -2.0115 2.7180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731210193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:07 Heat of formation + Delta-G solvation = 38.399796 kcal Electronic energy + Delta-G solvation = -27230.141301 eV Core-core repulsion = 23408.546148 eV Total energy + Delta-G solvation = -3821.595153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.81823 -41.05913 -40.13460 -38.36149 -35.14024 -34.51549 -34.04867 -33.59484 -31.91987 -30.47288 -29.76824 -28.51818 -27.17457 -25.99834 -24.21696 -23.71014 -23.31015 -22.35544 -21.59636 -20.32289 -20.26175 -18.72999 -18.52258 -18.12226 -17.09076 -16.97747 -16.78872 -16.16979 -15.71446 -15.64310 -15.44582 -15.24554 -14.99048 -14.79959 -14.40500 -14.30500 -14.08944 -13.94926 -13.74087 -13.56427 -13.19348 -12.93414 -12.88458 -12.82610 -12.51781 -12.34191 -12.24723 -12.09679 -12.04875 -11.94324 -11.85685 -11.49376 -11.30153 -10.88856 -10.76977 -10.15830 -9.89318 -9.49702 -9.03566 -8.95699 -6.26610 0.48517 0.55740 0.65591 1.34775 1.47152 1.60053 1.77783 2.34706 2.36965 2.64692 2.96942 3.14366 3.23840 3.30344 3.65463 3.75514 3.78401 3.92448 3.99903 4.04871 4.14160 4.20949 4.26515 4.29898 4.45683 4.48633 4.50568 4.58473 4.65734 4.67301 4.72969 4.76918 4.91064 4.93935 4.94117 4.98694 5.09297 5.12948 5.16119 5.18472 5.23797 5.31391 5.47494 5.65233 5.69104 5.90404 5.97445 6.04444 6.25628 6.84709 7.50707 7.60457 8.48269 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.002543 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.494410 B =11006.320025 C =12004.904071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.038 4.038 3 C -0.236 4.236 4 C 0.018 3.982 5 C 0.136 3.864 6 H 0.094 0.906 7 C -0.104 4.104 8 C -0.118 4.118 9 C 0.032 3.968 10 N -0.516 5.516 11 C 0.113 3.887 12 C -0.146 4.146 13 C -0.055 4.055 14 C -0.237 4.237 15 C 0.118 3.882 16 O -0.253 6.253 17 C -0.488 4.488 18 H 0.093 0.907 19 C -0.046 4.046 20 N -0.918 5.918 21 Si 1.146 2.854 22 H -0.273 1.273 23 H -0.259 1.259 24 H -0.259 1.259 25 C -0.206 4.206 26 C -0.049 4.049 27 N -0.377 5.377 28 O 0.075 5.925 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.199 0.801 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.142 0.858 42 H 0.121 0.879 43 H 0.259 0.741 44 H 0.109 0.891 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.042 21.201 -14.052 32.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C -0.258 4.258 4 C -0.141 4.141 5 C 0.027 3.973 6 H 0.112 0.888 7 C -0.142 4.142 8 C -0.156 4.156 9 C -0.095 4.095 10 N -0.240 5.240 11 C -0.015 4.015 12 C -0.147 4.147 13 C -0.074 4.074 14 C -0.256 4.256 15 C 0.068 3.932 16 O -0.161 6.161 17 C -0.563 4.563 18 H 0.110 0.890 19 C -0.242 4.242 20 N -0.553 5.553 21 Si 0.961 3.039 22 H -0.198 1.198 23 H -0.183 1.183 24 H -0.184 1.184 25 C -0.225 4.225 26 C -0.068 4.068 27 N -0.082 5.082 28 O 0.009 5.991 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.216 0.784 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.160 0.840 42 H 0.139 0.861 43 H 0.067 0.933 44 H 0.127 0.873 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.856 18.868 -13.434 29.246 hybrid contribution -1.606 1.057 -0.229 1.936 sum -19.462 19.924 -13.663 31.023 Atomic orbital electron populations 1.20542 0.81236 1.05495 1.05661 1.25330 0.98017 0.85601 1.01213 1.22676 0.89923 1.02289 1.10914 1.23621 0.97428 0.89901 1.03143 1.21053 0.85661 0.93119 0.97444 0.88841 1.22272 0.95552 1.02972 0.93450 1.22288 0.95475 1.02628 0.95227 1.23149 0.92439 0.98009 0.95921 1.65197 1.02712 1.50076 1.06011 1.20853 0.97451 0.95866 0.87317 1.19511 0.94715 0.95358 1.05118 1.20906 0.92252 0.98613 0.95612 1.21244 1.01324 0.93912 1.09087 1.19750 0.90474 0.89526 0.93411 1.83648 1.23469 1.36044 1.72926 1.22604 0.87711 1.02220 1.43803 0.88997 1.28466 1.08889 0.93234 0.93601 1.70709 1.21440 1.17844 1.45259 0.82587 0.67339 0.75973 0.77969 1.19816 1.18304 1.18369 1.20383 0.91242 1.01057 1.09842 1.20691 0.98455 0.92329 0.95329 1.74021 0.96671 1.17775 1.19736 1.84872 1.11674 1.34700 1.67830 0.89622 0.87549 0.87238 0.78415 0.92685 0.87788 0.92143 0.88471 0.91869 0.91952 0.91383 0.92012 0.84019 0.86126 0.93286 0.87266 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 71.24 0.74 0.30 16 2 C -0.04 -0.61 7.49 25.04 0.19 -0.42 16 3 C -0.24 -3.66 11.06 22.40 0.25 -3.41 16 4 C 0.02 0.41 5.80 43.58 0.25 0.66 16 5 C 0.14 2.66 2.78 44.32 0.12 2.78 16 6 H 0.09 1.40 7.99 -2.39 -0.02 1.38 16 7 C -0.10 -1.68 6.54 31.49 0.21 -1.47 16 8 C -0.12 -2.02 7.00 31.49 0.22 -1.80 16 9 C 0.03 0.71 5.70 86.45 0.49 1.20 16 10 N -0.52 -13.16 4.89 -865.63 -4.23 -17.39 16 11 C 0.11 2.99 4.92 85.56 0.42 3.41 16 12 C -0.15 -5.04 5.20 -19.83 -0.10 -5.15 16 13 C -0.06 -2.00 8.92 22.25 0.20 -1.80 16 14 C -0.24 -10.81 9.17 22.39 0.21 -10.60 16 15 C 0.12 6.23 6.65 22.58 0.15 6.38 16 16 O -0.25 -15.75 9.16 -22.68 -0.21 -15.96 16 17 C -0.49 -29.45 9.49 67.92 0.64 -28.80 16 18 H 0.09 5.14 5.20 -2.91 -0.02 5.12 16 19 C -0.05 -2.73 5.49 84.83 0.47 -2.26 16 20 N -0.92 -59.18 13.70 21.61 0.30 -58.88 16 21 Si 1.15 49.16 29.92 68.60 2.05 51.21 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 C -0.21 -9.64 9.99 22.39 0.22 -9.42 16 26 C -0.05 -1.94 9.69 22.25 0.22 -1.72 16 27 N -0.38 -10.81 11.93 -49.54 -0.59 -11.40 16 28 O 0.07 1.85 11.20 71.59 0.80 2.65 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.31 8.14 -2.38 -0.02 0.30 16 31 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.05 1.09 7.85 -2.39 -0.02 1.07 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.15 7.75 -2.39 -0.02 1.13 16 38 H 0.06 1.69 7.89 -2.38 -0.02 1.68 16 39 H 0.07 1.85 7.72 -2.39 -0.02 1.83 16 40 H 0.06 1.36 7.71 -2.39 -0.02 1.34 16 41 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 42 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 43 H 0.26 17.47 7.97 -92.71 -0.74 16.73 16 44 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 45 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -80.18 375.25 4.04 -76.14 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 1.03 Total: 25.75 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 4.90 Total: -52.12 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -4.53 Total: -87.68 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.59 Total: -13.31 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.05 Total: 51.21 kcal Total: -80.18 4.04 -76.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731210193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.543 kcal (2) G-P(sol) polarization free energy of solvation -80.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds