Wall clock time and date at job start Tue Mar 31 2020 15:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35454 * 126.77310 * 2 1 4 4 C 1.41377 * 103.98064 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.79835 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.90756 * 325.34400 * 5 4 3 7 7 C 1.53994 * 109.91745 * 86.45314 * 5 4 3 8 8 C 1.54601 * 105.13729 * 120.57686 * 7 5 4 9 9 C 1.54932 * 102.92428 * 21.95612 * 8 7 5 10 10 N 1.47908 * 109.91616 * 204.04423 * 5 4 3 11 11 C 1.46897 * 111.00182 * 94.80213 * 10 5 4 12 12 C 1.50699 * 109.47137 * 170.00338 * 11 10 5 13 13 C 1.38307 * 119.92653 * 269.72535 * 12 11 10 14 14 C 1.38101 * 120.06654 * 179.72127 * 13 12 11 15 15 C 1.38878 * 119.93121 * 0.55195 * 14 13 12 16 16 O 1.35751 * 120.06944 * 179.74678 * 15 14 13 17 17 C 1.34833 * 116.99982 * 174.44367 * 16 15 14 18 18 H 1.08000 * 119.99813 * 5.05001 * 17 16 15 19 19 C 1.38647 * 120.00003 * 185.05254 * 17 16 15 20 20 N 1.31560 * 120.00305 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00201 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46922 * 89.99966 * 21 19 17 23 23 H 1.48498 * 109.47409 * 210.00140 * 21 19 17 24 24 H 1.48498 * 109.47254 * 330.00646 * 21 19 17 25 25 C 1.38884 * 119.86244 * 359.72307 * 15 14 13 26 26 C 1.38098 * 119.92891 * 359.97438 * 25 15 14 27 27 N 1.30174 * 106.39830 * 359.97438 * 4 3 2 28 28 O 1.20913 * 111.60422 * 359.72819 * 27 4 3 29 29 H 1.09001 * 109.47429 * 89.99854 * 1 2 3 30 30 H 1.09003 * 109.46935 * 210.00208 * 1 2 3 31 31 H 1.09005 * 109.47109 * 329.99832 * 1 2 3 32 32 H 1.08001 * 128.01095 * 359.97438 * 3 2 1 33 33 H 1.08999 * 110.30765 * 239.49133 * 7 5 4 34 34 H 1.08999 * 110.30605 * 1.66145 * 7 5 4 35 35 H 1.09004 * 110.72056 * 140.31812 * 8 7 5 36 36 H 1.08993 * 110.72169 * 263.59405 * 8 7 5 37 37 H 1.09009 * 110.66842 * 81.01868 * 9 8 7 38 38 H 1.08995 * 110.67008 * 204.14781 * 9 8 7 39 39 H 1.09000 * 109.46966 * 289.99968 * 11 10 5 40 40 H 1.08999 * 109.47014 * 49.99624 * 11 10 5 41 41 H 1.07995 * 119.96629 * 0.02562 * 13 12 11 42 42 H 1.07999 * 120.03630 * 180.27174 * 14 13 12 43 43 H 0.96997 * 120.00236 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03407 * 179.97438 * 25 15 14 45 45 H 1.08003 * 119.96535 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9210 1.3002 0.0014 6 1 4.8147 2.2151 -0.5813 7 6 5.3273 1.6427 1.4467 8 6 6.7067 0.9741 1.6476 9 6 7.2254 0.8073 0.1972 10 7 5.9987 0.4600 -0.5647 11 6 6.1761 0.7268 -1.9983 12 6 7.4287 0.0448 -2.4850 13 6 8.6374 0.7162 -2.4517 14 6 9.7880 0.0920 -2.8915 15 6 9.7287 -1.2073 -3.3783 16 8 10.8572 -1.8218 -3.8162 17 6 10.7508 -3.1192 -4.1675 18 1 9.7836 -3.5999 -4.1718 19 6 11.8829 -3.8362 -4.5231 20 7 13.0611 -3.2509 -4.5174 21 14 11.7356 -5.6338 -5.0092 22 1 11.5150 -5.7340 -6.4744 23 1 12.9858 -6.3487 -4.6468 24 1 10.5888 -6.2479 -4.2930 25 6 8.5125 -1.8769 -3.4158 26 6 7.3665 -1.2494 -2.9686 27 7 3.4763 -0.7563 0.0015 28 8 2.3095 -1.0735 0.0068 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 2.0344 2.1271 -0.0004 33 1 5.4087 2.7226 1.5710 34 1 4.6025 1.2336 2.1505 35 1 7.3692 1.6215 2.2222 36 1 6.5981 0.0039 2.1323 37 1 7.6537 1.7409 -0.1680 38 1 7.9553 -0.0002 0.1401 39 1 5.3166 0.3434 -2.5483 40 1 6.2611 1.8013 -2.1601 41 1 8.6822 1.7280 -2.0767 42 1 10.7323 0.6152 -2.8612 43 1 13.8532 -3.7526 -4.7658 44 1 8.4631 -2.8872 -3.7942 45 1 6.4204 -1.7697 -2.9971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731210194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:10 Heat of formation + Delta-G solvation = 66.378396 kcal Electronic energy + Delta-G solvation = -27158.320715 eV Core-core repulsion = 23337.938805 eV Total energy + Delta-G solvation = -3820.381910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.95322 -39.59257 -38.65644 -36.51552 -34.28364 -33.33312 -32.73674 -32.04065 -30.16842 -29.17856 -28.62773 -27.91482 -25.69392 -24.52599 -23.31348 -22.32379 -21.96356 -21.14823 -20.13483 -19.43141 -17.96342 -17.66498 -17.29395 -16.91565 -15.95235 -15.87747 -14.88197 -14.57410 -14.42808 -14.27777 -14.06424 -13.75368 -13.62801 -13.56986 -13.50202 -13.24878 -12.90224 -12.74243 -12.64067 -12.34426 -12.21010 -11.91969 -11.70830 -11.43755 -11.20375 -11.17280 -11.02297 -10.77955 -10.71192 -10.60826 -10.48797 -10.40082 -10.01508 -9.39560 -9.29901 -8.81508 -8.37097 -8.13746 -7.14939 -6.43104 -4.01662 1.40936 2.18025 2.24403 2.31588 3.03229 3.14549 3.16065 3.20932 3.84404 3.99112 4.07957 4.46515 4.53203 4.68158 4.71762 4.81296 4.88542 5.03282 5.05566 5.11337 5.15301 5.25508 5.28519 5.35921 5.38091 5.41495 5.51134 5.60695 5.65260 5.71063 5.77333 5.82486 5.87348 5.91949 5.97351 6.11606 6.17771 6.24238 6.45947 6.72286 6.87416 6.97411 7.06539 7.13211 7.28148 7.45042 7.47763 7.85249 8.02401 8.34115 9.02839 9.72781 10.74932 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.002553 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.377483 B =10965.787983 C =11929.297002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.043 4.043 3 C -0.236 4.236 4 C 0.031 3.969 5 C 0.139 3.861 6 H 0.072 0.928 7 C -0.118 4.118 8 C -0.124 4.124 9 C 0.043 3.957 10 N -0.498 5.498 11 C 0.108 3.892 12 C -0.183 4.183 13 C -0.067 4.067 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.234 4.234 26 C -0.047 4.047 27 N -0.327 5.327 28 O 0.097 5.903 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.166 0.834 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.306 11.023 10.788 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C -0.258 4.258 4 C -0.129 4.129 5 C 0.030 3.970 6 H 0.089 0.911 7 C -0.157 4.157 8 C -0.162 4.162 9 C -0.084 4.084 10 N -0.222 5.222 11 C -0.018 4.018 12 C -0.185 4.185 13 C -0.086 4.086 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.191 1.191 25 C -0.254 4.254 26 C -0.066 4.066 27 N -0.028 5.028 28 O 0.028 5.972 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.184 0.816 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.077 9.438 10.730 25.465 hybrid contribution -0.288 0.726 -0.469 0.911 sum -21.365 10.164 10.261 25.789 Atomic orbital electron populations 1.20294 0.84401 1.04369 1.03940 1.24473 0.96332 0.86559 1.03293 1.22326 0.91460 1.00758 1.11229 1.23351 0.96036 0.90144 1.03356 1.20666 0.87224 0.92637 0.96507 0.91070 1.22401 0.98007 1.00609 0.94666 1.22516 0.95330 1.01186 0.97210 1.23198 0.92941 1.00475 0.91777 1.64709 1.03596 1.50872 1.03027 1.20953 0.96503 0.96844 0.87550 1.19019 0.93657 0.96167 1.09628 1.20470 0.91674 0.98019 0.98415 1.20148 0.98515 0.94460 1.08192 1.19393 0.87077 0.92149 0.91136 1.83973 1.28273 1.25476 1.70413 1.21334 0.95509 0.83611 1.46236 0.89059 1.25285 0.94186 1.00142 0.96909 1.70039 0.98263 1.36973 1.44573 0.85718 0.78285 0.80476 0.79011 1.19891 1.20251 1.19143 1.21159 0.92483 1.01967 1.09770 1.20574 0.97089 0.93445 0.95443 1.74005 0.95325 1.16232 1.17240 1.84919 1.11734 1.33229 1.67308 0.89593 0.89965 0.89339 0.81597 0.90880 0.91111 0.90891 0.90731 0.93526 0.89133 0.91139 0.94804 0.87571 0.86632 0.92053 0.85615 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.01 0.38 0.05 16 2 C -0.04 -0.39 7.49 -35.30 -0.26 -0.66 16 3 C -0.24 -2.22 11.06 -39.38 -0.44 -2.66 16 4 C 0.03 0.39 6.06 -82.10 -0.50 -0.11 16 5 C 0.14 1.63 2.98 -67.79 -0.20 1.43 16 6 H 0.07 0.74 7.58 -51.93 -0.39 0.35 16 7 C -0.12 -1.17 6.56 -25.37 -0.17 -1.33 16 8 C -0.12 -1.36 7.06 -24.87 -0.18 -1.53 16 9 C 0.04 0.58 4.97 -1.90 -0.01 0.57 16 10 N -0.50 -7.11 4.88 -225.37 -1.10 -8.21 16 11 C 0.11 1.61 5.18 -4.98 -0.03 1.58 16 12 C -0.18 -3.26 4.59 -104.57 -0.48 -3.74 16 13 C -0.07 -1.20 8.35 -39.61 -0.33 -1.53 16 14 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 15 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 16 O -0.18 -5.17 9.76 0.04 0.00 -5.17 16 17 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 21 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 26 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 27 N -0.33 -4.80 11.90 33.42 0.40 -4.40 16 28 O 0.10 1.22 11.20 17.19 0.19 1.41 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.58 7.10 -51.92 -0.37 0.21 16 38 H 0.09 1.42 7.74 -51.93 -0.40 1.02 16 39 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.03 0.45 7.76 -51.93 -0.40 0.05 16 41 H 0.11 1.60 7.40 -52.49 -0.39 1.21 16 42 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 45 H 0.11 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -32.91 373.02 -8.85 -41.76 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.28 Total: 3.63 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -3.41 Total: -25.68 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.06 Total: -37.49 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: 0.19 Total: -3.76 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.91 -8.85 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731210194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.141 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds