Wall clock time and date at job start Tue Mar 31 2020 15:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35454 * 126.77310 * 2 1 4 4 C 1.41377 * 103.98064 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.79835 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.90756 * 325.34400 * 5 4 3 7 7 C 1.53994 * 109.91745 * 86.45314 * 5 4 3 8 8 C 1.54601 * 105.13729 * 120.57686 * 7 5 4 9 9 C 1.54932 * 102.92428 * 21.95612 * 8 7 5 10 10 N 1.47908 * 109.91616 * 204.04423 * 5 4 3 11 11 C 1.46897 * 111.00182 * 94.80213 * 10 5 4 12 12 C 1.50699 * 109.47137 * 170.00338 * 11 10 5 13 13 C 1.38307 * 119.92653 * 269.72535 * 12 11 10 14 14 C 1.38101 * 120.06654 * 179.72127 * 13 12 11 15 15 C 1.38878 * 119.93121 * 0.55195 * 14 13 12 16 16 O 1.35751 * 120.06944 * 179.74678 * 15 14 13 17 17 C 1.34833 * 116.99982 * 174.44367 * 16 15 14 18 18 H 1.08000 * 119.99813 * 5.05001 * 17 16 15 19 19 C 1.38647 * 120.00003 * 185.05254 * 17 16 15 20 20 N 1.31560 * 120.00305 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00201 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46922 * 89.99966 * 21 19 17 23 23 H 1.48498 * 109.47409 * 210.00140 * 21 19 17 24 24 H 1.48498 * 109.47254 * 330.00646 * 21 19 17 25 25 C 1.38884 * 119.86244 * 359.72307 * 15 14 13 26 26 C 1.38098 * 119.92891 * 359.97438 * 25 15 14 27 27 N 1.30174 * 106.39830 * 359.97438 * 4 3 2 28 28 O 1.20913 * 111.60422 * 359.72819 * 27 4 3 29 29 H 1.09001 * 109.47429 * 89.99854 * 1 2 3 30 30 H 1.09003 * 109.46935 * 210.00208 * 1 2 3 31 31 H 1.09005 * 109.47109 * 329.99832 * 1 2 3 32 32 H 1.08001 * 128.01095 * 359.97438 * 3 2 1 33 33 H 1.08999 * 110.30765 * 239.49133 * 7 5 4 34 34 H 1.08999 * 110.30605 * 1.66145 * 7 5 4 35 35 H 1.09004 * 110.72056 * 140.31812 * 8 7 5 36 36 H 1.08993 * 110.72169 * 263.59405 * 8 7 5 37 37 H 1.09009 * 110.66842 * 81.01868 * 9 8 7 38 38 H 1.08995 * 110.67008 * 204.14781 * 9 8 7 39 39 H 1.09000 * 109.46966 * 289.99968 * 11 10 5 40 40 H 1.08999 * 109.47014 * 49.99624 * 11 10 5 41 41 H 1.07995 * 119.96629 * 0.02562 * 13 12 11 42 42 H 1.07999 * 120.03630 * 180.27174 * 14 13 12 43 43 H 0.96997 * 120.00236 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03407 * 179.97438 * 25 15 14 45 45 H 1.08003 * 119.96535 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9210 1.3002 0.0014 6 1 4.8147 2.2151 -0.5813 7 6 5.3273 1.6427 1.4467 8 6 6.7067 0.9741 1.6476 9 6 7.2254 0.8073 0.1972 10 7 5.9987 0.4600 -0.5647 11 6 6.1761 0.7268 -1.9983 12 6 7.4287 0.0448 -2.4850 13 6 8.6374 0.7162 -2.4517 14 6 9.7880 0.0920 -2.8915 15 6 9.7287 -1.2073 -3.3783 16 8 10.8572 -1.8218 -3.8162 17 6 10.7508 -3.1192 -4.1675 18 1 9.7836 -3.5999 -4.1718 19 6 11.8829 -3.8362 -4.5231 20 7 13.0611 -3.2509 -4.5174 21 14 11.7356 -5.6338 -5.0092 22 1 11.5150 -5.7340 -6.4744 23 1 12.9858 -6.3487 -4.6468 24 1 10.5888 -6.2479 -4.2930 25 6 8.5125 -1.8769 -3.4158 26 6 7.3665 -1.2494 -2.9686 27 7 3.4763 -0.7563 0.0015 28 8 2.3095 -1.0735 0.0068 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 2.0344 2.1271 -0.0004 33 1 5.4087 2.7226 1.5710 34 1 4.6025 1.2336 2.1505 35 1 7.3692 1.6215 2.2222 36 1 6.5981 0.0039 2.1323 37 1 7.6537 1.7409 -0.1680 38 1 7.9553 -0.0002 0.1401 39 1 5.3166 0.3434 -2.5483 40 1 6.2611 1.8013 -2.1601 41 1 8.6822 1.7280 -2.0767 42 1 10.7323 0.6152 -2.8612 43 1 13.8532 -3.7526 -4.7658 44 1 8.4631 -2.8872 -3.7942 45 1 6.4204 -1.7697 -2.9971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731210194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:10 Heat of formation + Delta-G solvation = 45.764887 kcal Electronic energy + Delta-G solvation = -27159.214584 eV Core-core repulsion = 23337.938805 eV Total energy + Delta-G solvation = -3821.275779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.78626 -41.02230 -40.08653 -38.20520 -35.11453 -34.44944 -34.01608 -33.55968 -31.85335 -30.47308 -29.69826 -28.47561 -27.58225 -25.95948 -24.17625 -23.75873 -23.16013 -22.37355 -21.47863 -20.27674 -19.86622 -18.86797 -18.51312 -18.05414 -17.03222 -16.82810 -16.46427 -16.35438 -15.91906 -15.53267 -15.28536 -15.08393 -14.86731 -14.63411 -14.41514 -14.32112 -14.01526 -13.90313 -13.62680 -13.58165 -13.44368 -13.10127 -12.97436 -12.78107 -12.63879 -12.43913 -12.21105 -12.13796 -12.12438 -11.98403 -11.80256 -11.57930 -11.21006 -10.83741 -10.80689 -10.13705 -9.80851 -9.42745 -8.92181 -8.49681 -6.17722 0.56321 0.62529 0.68746 1.32623 1.39102 1.41648 1.50102 2.15663 2.39771 2.68075 2.96074 3.19853 3.28239 3.48470 3.67416 3.80241 3.82519 3.97517 4.03382 4.08400 4.16248 4.23111 4.28359 4.38485 4.48611 4.54134 4.57055 4.62385 4.70998 4.76214 4.77194 4.80479 4.90941 4.96638 5.00071 5.04145 5.11783 5.12101 5.16905 5.22237 5.27208 5.33172 5.51724 5.68238 5.76570 5.95763 6.00285 6.06083 6.18953 6.95059 7.54848 7.74808 8.73336 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.002553 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.377483 B =10965.787983 C =11929.297002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.039 4.039 3 C -0.238 4.238 4 C 0.020 3.980 5 C 0.138 3.862 6 H 0.094 0.906 7 C -0.109 4.109 8 C -0.120 4.120 9 C 0.041 3.959 10 N -0.521 5.521 11 C 0.114 3.886 12 C -0.156 4.156 13 C -0.052 4.052 14 C -0.200 4.200 15 C 0.117 3.883 16 O -0.230 6.230 17 C -0.414 4.414 18 H 0.097 0.903 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.017 2.983 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.257 1.257 25 C -0.243 4.243 26 C -0.053 4.053 27 N -0.377 5.377 28 O 0.074 5.926 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.198 0.802 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.149 0.851 42 H 0.118 0.882 43 H 0.273 0.727 44 H 0.114 0.886 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.654 13.358 11.922 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.259 4.259 4 C -0.140 4.140 5 C 0.029 3.971 6 H 0.111 0.889 7 C -0.148 4.148 8 C -0.158 4.158 9 C -0.086 4.086 10 N -0.245 5.245 11 C -0.013 4.013 12 C -0.157 4.157 13 C -0.071 4.071 14 C -0.219 4.219 15 C 0.066 3.934 16 O -0.136 6.136 17 C -0.491 4.491 18 H 0.115 0.885 19 C -0.219 4.219 20 N -0.557 5.557 21 Si 0.836 3.164 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.181 1.181 25 C -0.263 4.263 26 C -0.072 4.072 27 N -0.082 5.082 28 O 0.008 5.992 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.215 0.785 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.167 0.833 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.499 11.800 11.886 29.677 hybrid contribution 0.439 0.241 -0.666 0.834 sum -24.060 12.041 11.219 29.150 Atomic orbital electron populations 1.20532 0.81243 1.05916 1.05183 1.25322 0.98003 0.85633 1.01319 1.22693 0.90003 1.02248 1.10980 1.23745 0.97499 0.89919 1.02846 1.20831 0.85911 0.92707 0.97640 0.88860 1.22393 0.96739 1.02275 0.93379 1.22481 0.96612 1.00968 0.95774 1.23170 0.92181 0.99838 0.93433 1.64586 1.04757 1.52688 1.02496 1.20908 0.94231 0.97944 0.88251 1.19483 0.95190 0.95039 1.05995 1.20855 0.90198 0.99536 0.96481 1.20440 1.00126 0.93430 1.07914 1.19924 0.86934 0.93608 0.92934 1.83936 1.30399 1.25994 1.73295 1.21775 0.96234 0.84177 1.46869 0.88540 1.26559 0.93485 1.05243 0.96592 1.70174 0.99247 1.39228 1.47011 0.84611 0.78755 0.73883 0.79112 1.18619 1.19282 1.18082 1.21192 0.93014 1.01724 1.10342 1.20794 0.96571 0.94523 0.95320 1.74004 0.96576 1.17847 1.19811 1.84853 1.11699 1.34682 1.67929 0.88311 0.89309 0.86893 0.78499 0.87798 0.91525 0.88606 0.92689 0.91858 0.92433 0.91439 0.91952 0.83297 0.86439 0.91759 0.86842 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 71.24 0.74 0.32 16 2 C -0.04 -0.63 7.49 25.04 0.19 -0.44 16 3 C -0.24 -3.73 11.06 22.40 0.25 -3.49 16 4 C 0.02 0.44 6.06 43.58 0.26 0.71 16 5 C 0.14 2.76 2.98 44.31 0.13 2.90 16 6 H 0.09 1.47 7.58 -2.39 -0.02 1.45 16 7 C -0.11 -1.76 6.56 31.47 0.21 -1.56 16 8 C -0.12 -2.34 7.06 31.80 0.22 -2.11 16 9 C 0.04 0.99 4.97 86.65 0.43 1.43 16 10 N -0.52 -13.59 4.88 -866.95 -4.23 -17.82 16 11 C 0.11 3.01 5.18 85.56 0.44 3.45 16 12 C -0.16 -5.24 4.59 -19.83 -0.09 -5.34 16 13 C -0.05 -1.77 8.35 22.25 0.19 -1.58 16 14 C -0.20 -8.64 9.99 22.39 0.22 -8.42 16 15 C 0.12 6.03 6.65 22.58 0.15 6.18 16 16 O -0.23 -14.24 9.76 -22.78 -0.22 -14.46 16 17 C -0.41 -25.02 9.49 67.92 0.64 -24.38 16 18 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 19 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 20 N -0.92 -57.39 13.67 21.61 0.30 -57.09 16 21 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 C -0.24 -11.46 9.17 22.39 0.21 -11.25 16 26 C -0.05 -2.09 9.69 22.25 0.22 -1.88 16 27 N -0.38 -10.86 11.90 -49.57 -0.59 -11.45 16 28 O 0.07 1.81 11.20 71.67 0.80 2.61 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 32 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.16 7.68 -2.39 -0.02 1.14 16 35 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.31 7.10 -2.38 -0.02 1.29 16 38 H 0.06 1.77 7.74 -2.39 -0.02 1.75 16 39 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 40 H 0.06 1.34 7.76 -2.39 -0.02 1.32 16 41 H 0.15 3.81 7.40 -2.91 -0.02 3.79 16 42 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.11 5.51 5.64 -2.91 -0.02 5.49 16 45 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -78.56 373.02 3.96 -74.59 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 1.00 Total: 23.45 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 4.88 Total: -46.23 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -4.52 Total: -86.36 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.58 Total: -11.85 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -78.56 3.96 -74.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731210194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.359 kcal (2) G-P(sol) polarization free energy of solvation -78.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds