Wall clock time and date at job start Tue Mar 31 2020 15:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41377 * 126.80442 * 2 1 4 4 C 1.35448 * 103.98956 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77899 * 179.97438 * 4 3 2 6 6 H 1.08993 * 110.45999 * 17.58860 * 5 4 3 7 7 C 1.54378 * 110.41379 * 255.17445 * 5 4 3 8 8 C 1.54264 * 105.06233 * 217.37210 * 7 5 4 9 9 C 1.54380 * 105.05600 * 359.97438 * 8 7 5 10 10 N 1.48552 * 104.59962 * 23.85525 * 9 8 7 11 11 C 1.46901 * 111.00418 * 200.96046 * 10 9 8 12 12 C 1.50704 * 109.46965 * 285.42151 * 11 10 9 13 13 C 1.38291 * 119.93353 * 89.99552 * 12 11 10 14 14 C 1.38102 * 120.07287 * 179.97438 * 13 12 11 15 15 C 1.38885 * 119.92439 * 0.02562 * 14 13 12 16 16 O 1.35749 * 120.06407 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00532 * 5.53097 * 16 15 14 18 18 H 1.08004 * 119.99637 * 354.94802 * 17 16 15 19 19 C 1.38650 * 120.00451 * 174.94170 * 17 16 15 20 20 N 1.31563 * 119.99897 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47246 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47151 * 60.00115 * 21 19 17 24 24 H 1.48501 * 109.47141 * 300.00219 * 21 19 17 25 25 C 1.38878 * 119.86442 * 0.25280 * 15 14 13 26 26 C 1.38094 * 119.93045 * 359.49209 * 25 15 14 27 27 O 1.34040 * 106.44380 * 0.24345 * 4 3 2 28 28 N 1.20924 * 111.56924 * 359.56647 * 27 4 3 29 29 H 1.09008 * 109.47281 * 89.99606 * 1 2 3 30 30 H 1.09000 * 109.47239 * 209.99699 * 1 2 3 31 31 H 1.08999 * 109.47277 * 329.99803 * 1 2 3 32 32 H 1.08000 * 128.00504 * 0.04216 * 3 2 1 33 33 H 1.09001 * 110.31898 * 336.26413 * 7 5 4 34 34 H 1.08995 * 110.32228 * 98.47039 * 7 5 4 35 35 H 1.08994 * 110.32280 * 118.89252 * 8 7 5 36 36 H 1.08999 * 110.31876 * 241.00001 * 8 7 5 37 37 H 1.09002 * 110.41103 * 265.07477 * 9 8 7 38 38 H 1.09006 * 110.41014 * 142.63893 * 9 8 7 39 39 H 1.08993 * 109.47591 * 165.41659 * 11 10 9 40 40 H 1.09002 * 109.46999 * 45.41424 * 11 10 9 41 41 H 1.07999 * 119.96624 * 359.97438 * 13 12 11 42 42 H 1.07994 * 120.03945 * 179.97438 * 14 13 12 43 43 H 0.96993 * 120.00003 * 359.97438 * 20 19 17 44 44 H 1.07997 * 120.03571 * 179.72341 * 25 15 14 45 45 H 1.07998 * 119.96774 * 180.27428 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9022 1.3695 -0.0014 6 1 4.7383 2.4019 0.3071 7 6 5.5532 1.3225 -1.4004 8 6 7.0684 1.2092 -1.1338 9 6 7.2054 1.1979 0.4038 10 7 5.8894 0.7128 0.8934 11 6 5.6722 1.1023 2.2931 12 6 6.5197 0.2391 3.1919 13 6 7.8024 0.6371 3.5216 14 6 8.5814 -0.1514 4.3455 15 6 8.0753 -1.3454 4.8426 16 8 8.8387 -2.1229 5.6523 17 6 10.0344 -1.6262 6.0283 18 1 10.3814 -0.6878 5.6215 19 6 10.8185 -2.3200 6.9373 20 7 10.3960 -3.4632 7.4325 21 14 12.4748 -1.6314 7.4587 22 1 13.1116 -2.5562 8.4307 23 1 12.2811 -0.3026 8.0929 24 1 13.3489 -1.4883 6.2668 25 6 6.7888 -1.7451 4.5050 26 6 6.0130 -0.9496 3.6850 27 8 3.4537 -0.7253 -0.0064 28 7 2.2868 -1.0424 -0.0007 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.0710 2.1743 0.0006 33 1 5.2000 0.4521 -1.9532 34 1 5.3330 2.2369 -1.9513 35 1 7.4588 0.2832 -1.5559 36 1 7.5921 2.0671 -1.5555 37 1 7.4020 2.2036 0.7754 38 1 7.9995 0.5167 0.7098 39 1 4.6208 0.9699 2.5481 40 1 5.9496 2.1479 2.4265 41 1 8.1955 1.5655 3.1343 42 1 9.5832 0.1597 4.6022 43 1 9.5358 -3.8206 7.1621 44 1 6.3941 -2.6752 4.8864 45 1 5.0109 -1.2577 3.4257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731211639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:19 Heat of formation + Delta-G solvation = 58.427413 kcal Electronic energy + Delta-G solvation = -27265.697895 eV Core-core repulsion = 23444.971205 eV Total energy + Delta-G solvation = -3820.726690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.98314 -39.61664 -38.79678 -36.64836 -34.88519 -33.04410 -32.56830 -32.04254 -30.21935 -29.04716 -28.84094 -28.40625 -25.34790 -24.47932 -23.19811 -22.39795 -21.98094 -21.17962 -20.35789 -19.72619 -18.34763 -17.62687 -17.37703 -16.84747 -16.21215 -15.77966 -15.14873 -14.90144 -14.34585 -14.18849 -13.99672 -13.72403 -13.66082 -13.63847 -13.53661 -13.21908 -13.10159 -13.02231 -12.79366 -12.65769 -12.36833 -11.89673 -11.56275 -11.36372 -11.23892 -11.17278 -11.03473 -10.80021 -10.71255 -10.68467 -10.29503 -10.26516 -10.13365 -9.48472 -9.39132 -8.77789 -8.62523 -8.20620 -7.23726 -6.76154 -4.05206 1.34836 2.06564 2.18269 2.23524 2.98620 3.23605 3.28270 3.45293 3.72193 4.04337 4.12345 4.30727 4.34966 4.56788 4.61820 4.72051 4.89485 4.96118 5.08135 5.09489 5.15795 5.19432 5.20437 5.23593 5.29478 5.34886 5.42363 5.52219 5.56468 5.58530 5.65372 5.71271 5.76316 5.83756 5.90518 5.91771 6.01160 6.16785 6.37177 6.63809 6.67508 6.82394 6.90923 7.09700 7.26651 7.34929 7.57275 7.74841 8.22171 8.41158 8.93162 9.62581 10.67939 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.002567 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.820980 B =10903.016431 C =11891.137052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.240 4.240 4 C 0.002 3.998 5 C 0.134 3.866 6 H 0.084 0.916 7 C -0.115 4.115 8 C -0.124 4.124 9 C 0.036 3.964 10 N -0.495 5.495 11 C 0.103 3.897 12 C -0.175 4.175 13 C -0.063 4.063 14 C -0.231 4.231 15 C 0.160 3.840 16 O -0.202 6.202 17 C -0.472 4.472 18 H 0.083 0.917 19 C 0.009 3.991 20 N -0.881 5.881 21 Si 1.096 2.904 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.196 4.196 26 C -0.050 4.050 27 O 0.123 5.877 28 N -0.369 5.369 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.282 0.718 44 H 0.114 0.886 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 14.058 -17.371 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 C -0.263 4.263 4 C -0.063 4.063 5 C 0.025 3.975 6 H 0.102 0.898 7 C -0.153 4.153 8 C -0.162 4.162 9 C -0.091 4.091 10 N -0.219 5.219 11 C -0.024 4.024 12 C -0.176 4.176 13 C -0.082 4.082 14 C -0.250 4.250 15 C 0.106 3.894 16 O -0.107 6.107 17 C -0.547 4.547 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.513 5.513 21 Si 0.920 3.080 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.215 4.215 26 C -0.069 4.069 27 O 0.055 5.945 28 N -0.072 5.072 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.132 0.868 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.406 11.584 -16.266 23.509 hybrid contribution -1.418 2.165 -0.912 2.744 sum -13.824 13.749 -17.178 25.985 Atomic orbital electron populations 1.20133 0.86139 1.03705 1.03142 1.23557 0.98961 0.88886 1.03554 1.22349 0.91111 1.01028 1.11778 1.24179 0.96908 0.84026 1.01201 1.21137 0.86790 0.94096 0.95512 0.89785 1.22348 0.95585 1.02844 0.94537 1.22321 0.95233 1.02741 0.95868 1.23138 0.92645 0.99224 0.94138 1.65417 1.01346 1.53315 1.01815 1.20982 0.99157 0.95891 0.86369 1.18957 0.95828 0.98276 1.04579 1.20562 0.93139 0.97964 0.96497 1.21115 1.01749 0.97335 1.04789 1.19246 0.90306 0.89640 0.90184 1.83667 1.29042 1.41097 1.56870 1.22191 0.93487 1.09789 1.29279 0.89930 1.26535 1.04580 0.95356 0.93129 1.70569 1.22423 1.17425 1.40910 0.83112 0.72530 0.75495 0.76898 1.19779 1.20767 1.20738 1.20188 0.93131 1.02347 1.05855 1.20434 0.98236 0.93091 0.95101 1.84916 1.20848 1.22410 1.66305 1.73911 0.89614 1.24222 1.19411 0.90373 0.90596 0.90186 0.81446 0.90509 0.90648 0.90519 0.91038 0.93554 0.89001 0.91063 0.94210 0.87863 0.85552 0.90775 0.86765 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.47 36.01 0.38 -0.17 16 2 C 0.01 0.10 7.33 -82.10 -0.60 -0.50 16 3 C -0.24 -2.34 11.06 -39.38 -0.44 -2.77 16 4 C 0.00 0.02 5.88 -35.30 -0.21 -0.19 16 5 C 0.13 1.30 2.75 -67.23 -0.18 1.12 16 6 H 0.08 0.67 7.99 -51.93 -0.42 0.26 16 7 C -0.11 -0.94 6.54 -25.35 -0.17 -1.10 16 8 C -0.12 -1.05 7.00 -25.35 -0.18 -1.23 16 9 C 0.04 0.39 5.70 -2.19 -0.01 0.38 16 10 N -0.49 -6.09 4.99 -224.96 -1.12 -7.21 16 11 C 0.10 1.37 4.92 -4.97 -0.02 1.34 16 12 C -0.18 -2.98 5.20 -104.57 -0.54 -3.52 16 13 C -0.06 -1.13 8.92 -39.61 -0.35 -1.48 16 14 C -0.23 -5.03 9.17 -39.39 -0.36 -5.40 16 15 C 0.16 3.91 6.65 -39.10 -0.26 3.65 16 16 O -0.20 -5.79 9.16 0.07 0.00 -5.79 16 17 C -0.47 -13.36 9.49 30.88 0.29 -13.07 16 18 H 0.08 2.19 5.20 -52.48 -0.27 1.92 16 19 C 0.01 0.26 5.49 -17.51 -0.10 0.17 16 20 N -0.88 -26.59 13.70 55.48 0.76 -25.83 16 21 Si 1.10 23.77 29.92 -169.99 -5.09 18.69 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 C -0.20 -4.25 9.99 -39.40 -0.39 -4.64 16 26 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 27 O 0.12 1.74 11.20 17.18 0.19 1.93 16 28 N -0.37 -5.19 12.07 33.42 0.40 -4.79 16 29 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.08 0.69 7.85 -51.93 -0.41 0.29 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16 38 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 39 H 0.07 0.94 7.72 -51.93 -0.40 0.54 16 40 H 0.04 0.47 7.71 -51.93 -0.40 0.07 16 41 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 43 H 0.28 8.72 7.97 -40.82 -0.33 8.40 16 44 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -32.54 375.41 -9.08 -41.62 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.35 Total: 4.45 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -3.53 Total: -28.74 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.04 Total: -37.82 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.19 Total: -3.85 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.09 Total: 18.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.54 -9.08 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731211639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.048 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds