Wall clock time and date at job start Tue Mar 31 2020 15:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41377 * 126.80442 * 2 1 4 4 C 1.35448 * 103.98956 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77899 * 179.97438 * 4 3 2 6 6 H 1.08993 * 110.45999 * 17.58860 * 5 4 3 7 7 C 1.54378 * 110.41379 * 255.17445 * 5 4 3 8 8 C 1.54264 * 105.06233 * 217.37210 * 7 5 4 9 9 C 1.54380 * 105.05600 * 359.97438 * 8 7 5 10 10 N 1.48552 * 104.59962 * 23.85525 * 9 8 7 11 11 C 1.46901 * 111.00418 * 200.96046 * 10 9 8 12 12 C 1.50704 * 109.46965 * 285.42151 * 11 10 9 13 13 C 1.38291 * 119.93353 * 89.99552 * 12 11 10 14 14 C 1.38102 * 120.07287 * 179.97438 * 13 12 11 15 15 C 1.38885 * 119.92439 * 0.02562 * 14 13 12 16 16 O 1.35749 * 120.06407 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00532 * 5.53097 * 16 15 14 18 18 H 1.08004 * 119.99637 * 354.94802 * 17 16 15 19 19 C 1.38650 * 120.00451 * 174.94170 * 17 16 15 20 20 N 1.31563 * 119.99897 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47246 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47151 * 60.00115 * 21 19 17 24 24 H 1.48501 * 109.47141 * 300.00219 * 21 19 17 25 25 C 1.38878 * 119.86442 * 0.25280 * 15 14 13 26 26 C 1.38094 * 119.93045 * 359.49209 * 25 15 14 27 27 O 1.34040 * 106.44380 * 0.24345 * 4 3 2 28 28 N 1.20924 * 111.56924 * 359.56647 * 27 4 3 29 29 H 1.09008 * 109.47281 * 89.99606 * 1 2 3 30 30 H 1.09000 * 109.47239 * 209.99699 * 1 2 3 31 31 H 1.08999 * 109.47277 * 329.99803 * 1 2 3 32 32 H 1.08000 * 128.00504 * 0.04216 * 3 2 1 33 33 H 1.09001 * 110.31898 * 336.26413 * 7 5 4 34 34 H 1.08995 * 110.32228 * 98.47039 * 7 5 4 35 35 H 1.08994 * 110.32280 * 118.89252 * 8 7 5 36 36 H 1.08999 * 110.31876 * 241.00001 * 8 7 5 37 37 H 1.09002 * 110.41103 * 265.07477 * 9 8 7 38 38 H 1.09006 * 110.41014 * 142.63893 * 9 8 7 39 39 H 1.08993 * 109.47591 * 165.41659 * 11 10 9 40 40 H 1.09002 * 109.46999 * 45.41424 * 11 10 9 41 41 H 1.07999 * 119.96624 * 359.97438 * 13 12 11 42 42 H 1.07994 * 120.03945 * 179.97438 * 14 13 12 43 43 H 0.96993 * 120.00003 * 359.97438 * 20 19 17 44 44 H 1.07997 * 120.03571 * 179.72341 * 25 15 14 45 45 H 1.07998 * 119.96774 * 180.27428 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9022 1.3695 -0.0014 6 1 4.7383 2.4019 0.3071 7 6 5.5532 1.3225 -1.4004 8 6 7.0684 1.2092 -1.1338 9 6 7.2054 1.1979 0.4038 10 7 5.8894 0.7128 0.8934 11 6 5.6722 1.1023 2.2931 12 6 6.5197 0.2391 3.1919 13 6 7.8024 0.6371 3.5216 14 6 8.5814 -0.1514 4.3455 15 6 8.0753 -1.3454 4.8426 16 8 8.8387 -2.1229 5.6523 17 6 10.0344 -1.6262 6.0283 18 1 10.3814 -0.6878 5.6215 19 6 10.8185 -2.3200 6.9373 20 7 10.3960 -3.4632 7.4325 21 14 12.4748 -1.6314 7.4587 22 1 13.1116 -2.5562 8.4307 23 1 12.2811 -0.3026 8.0929 24 1 13.3489 -1.4883 6.2668 25 6 6.7888 -1.7451 4.5050 26 6 6.0130 -0.9496 3.6850 27 8 3.4537 -0.7253 -0.0064 28 7 2.2868 -1.0424 -0.0007 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.0710 2.1743 0.0006 33 1 5.2000 0.4521 -1.9532 34 1 5.3330 2.2369 -1.9513 35 1 7.4588 0.2832 -1.5559 36 1 7.5921 2.0671 -1.5555 37 1 7.4020 2.2036 0.7754 38 1 7.9995 0.5167 0.7098 39 1 4.6208 0.9699 2.5481 40 1 5.9496 2.1479 2.4265 41 1 8.1955 1.5655 3.1343 42 1 9.5832 0.1597 4.6022 43 1 9.5358 -3.8206 7.1621 44 1 6.3941 -2.6752 4.8864 45 1 5.0109 -1.2577 3.4257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731211639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:18 Heat of formation + Delta-G solvation = 38.224276 kcal Electronic energy + Delta-G solvation = -27266.573969 eV Core-core repulsion = 23444.971205 eV Total energy + Delta-G solvation = -3821.602764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.83127 -41.02570 -40.08581 -38.31935 -35.66322 -34.55352 -33.71162 -33.31525 -31.87621 -30.41450 -29.53163 -29.16641 -27.15164 -25.92868 -24.01124 -23.66952 -23.25517 -22.33741 -21.58757 -20.50324 -20.23986 -18.70115 -18.50092 -18.21098 -17.14146 -16.95920 -16.59935 -16.18572 -15.69334 -15.62323 -15.42294 -15.21901 -14.92468 -14.82691 -14.40116 -14.18399 -14.05971 -13.98777 -13.84817 -13.60167 -13.35670 -12.90947 -12.86431 -12.65693 -12.48819 -12.29738 -12.22393 -12.03309 -12.00598 -12.00207 -11.93483 -11.43234 -11.27253 -10.90626 -10.75780 -10.30928 -9.85836 -9.51706 -9.00828 -8.93802 -6.24926 0.50460 0.52205 0.61706 1.30929 1.48361 1.61204 1.78728 2.22985 2.36171 2.67322 2.98481 3.17446 3.32701 3.35292 3.59111 3.64509 3.77593 3.95601 4.03468 4.06269 4.14527 4.20708 4.29307 4.35326 4.43604 4.51179 4.53151 4.61853 4.62725 4.68975 4.70951 4.76632 4.91700 4.94573 4.97208 4.97985 5.07314 5.18118 5.19777 5.21383 5.28408 5.29427 5.50874 5.68718 5.71663 5.89652 5.98532 6.06013 6.28120 6.86459 7.39097 7.62958 8.50060 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.002567 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.820980 B =10903.016431 C =11891.137052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.004 3.996 3 C -0.230 4.230 4 C -0.010 4.010 5 C 0.139 3.861 6 H 0.115 0.885 7 C -0.110 4.110 8 C -0.119 4.119 9 C 0.033 3.967 10 N -0.521 5.521 11 C 0.107 3.893 12 C -0.145 4.145 13 C -0.054 4.054 14 C -0.237 4.237 15 C 0.117 3.883 16 O -0.255 6.255 17 C -0.486 4.486 18 H 0.093 0.907 19 C -0.047 4.047 20 N -0.919 5.919 21 Si 1.146 2.854 22 H -0.275 1.275 23 H -0.258 1.258 24 H -0.259 1.259 25 C -0.208 4.208 26 C -0.051 4.051 27 O 0.086 5.914 28 N -0.411 5.411 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.203 0.797 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.259 0.741 44 H 0.107 0.893 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.606 18.749 -19.802 30.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C -0.251 4.251 4 C -0.075 4.075 5 C 0.030 3.970 6 H 0.133 0.867 7 C -0.148 4.148 8 C -0.157 4.157 9 C -0.094 4.094 10 N -0.245 5.245 11 C -0.020 4.020 12 C -0.146 4.146 13 C -0.072 4.072 14 C -0.256 4.256 15 C 0.067 3.933 16 O -0.163 6.163 17 C -0.562 4.562 18 H 0.111 0.889 19 C -0.243 4.243 20 N -0.554 5.554 21 Si 0.961 3.039 22 H -0.200 1.200 23 H -0.183 1.183 24 H -0.183 1.183 25 C -0.227 4.227 26 C -0.070 4.070 27 O 0.023 5.977 28 N -0.119 5.119 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.220 0.780 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.067 0.933 44 H 0.125 0.875 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.584 16.318 -18.755 28.330 hybrid contribution -1.398 0.874 -0.448 1.709 sum -14.982 17.192 -19.203 29.813 Atomic orbital electron populations 1.20302 0.83911 1.04593 1.04363 1.24268 1.00534 0.88861 1.01721 1.22777 0.89989 1.02177 1.10206 1.24665 0.98288 0.83257 1.01249 1.21317 0.85372 0.94815 0.95514 0.86734 1.22358 0.94879 1.03703 0.93871 1.22300 0.95825 1.03276 0.94267 1.23167 0.91119 0.99431 0.95730 1.65241 1.02866 1.54941 1.01481 1.20947 0.98369 0.96257 0.86398 1.19519 0.95572 0.97153 1.02401 1.20933 0.92885 0.98634 0.94766 1.21256 1.02040 0.96948 1.05400 1.19776 0.91277 0.91115 0.91092 1.83648 1.29924 1.43109 1.59574 1.22600 0.93926 1.10244 1.29443 0.88916 1.28451 1.08122 0.94874 0.92804 1.70711 1.21821 1.19512 1.43357 0.82590 0.68189 0.75685 0.77434 1.19954 1.18287 1.18311 1.20394 0.92840 1.02852 1.06613 1.20728 0.98729 0.93357 0.94172 1.84859 1.21126 1.24130 1.67559 1.73921 0.90091 1.26051 1.21846 0.88899 0.91270 0.87727 0.77974 0.92091 0.87602 0.91853 0.88507 0.91478 0.91663 0.90655 0.91311 0.83760 0.86241 0.93303 0.87490 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.47 71.24 0.75 -0.17 16 2 C 0.00 0.09 7.33 43.58 0.32 0.41 16 3 C -0.23 -3.63 11.06 22.40 0.25 -3.38 16 4 C -0.01 -0.20 5.88 25.04 0.15 -0.05 16 5 C 0.14 2.11 2.75 44.32 0.12 2.23 16 6 H 0.12 1.10 7.99 -2.39 -0.02 1.08 16 7 C -0.11 -1.38 6.54 31.49 0.21 -1.17 16 8 C -0.12 -1.62 7.00 31.49 0.22 -1.39 16 9 C 0.03 0.59 5.70 86.45 0.49 1.08 16 10 N -0.52 -11.03 4.99 -865.63 -4.32 -15.35 16 11 C 0.11 2.40 4.92 85.56 0.42 2.82 16 12 C -0.15 -4.57 5.20 -19.83 -0.10 -4.67 16 13 C -0.05 -1.80 8.92 22.25 0.20 -1.60 16 14 C -0.24 -10.41 9.17 22.39 0.21 -10.20 16 15 C 0.12 6.00 6.65 22.58 0.15 6.15 16 16 O -0.25 -15.61 9.16 -22.68 -0.21 -15.81 16 17 C -0.49 -28.95 9.49 67.92 0.64 -28.30 16 18 H 0.09 5.09 5.20 -2.91 -0.02 5.07 16 19 C -0.05 -2.74 5.49 84.83 0.47 -2.28 16 20 N -0.92 -58.86 13.70 21.61 0.30 -58.57 16 21 Si 1.15 48.56 29.92 68.60 2.05 50.61 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 25 C -0.21 -9.38 9.99 22.39 0.22 -9.15 16 26 C -0.05 -1.88 9.69 22.25 0.22 -1.66 16 27 O 0.09 2.38 11.20 71.63 0.80 3.18 16 28 N -0.41 -11.37 12.07 -49.55 -0.60 -11.96 16 29 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.06 0.97 7.85 -2.39 -0.02 0.96 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.95 7.75 -2.39 -0.02 0.93 16 38 H 0.06 1.53 7.89 -2.38 -0.02 1.51 16 39 H 0.08 1.68 7.72 -2.39 -0.02 1.66 16 40 H 0.07 1.20 7.71 -2.39 -0.02 1.18 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.12 5.34 5.64 -2.91 -0.02 5.33 16 43 H 0.26 17.35 7.97 -92.71 -0.74 16.61 16 44 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 45 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -78.80 375.41 3.97 -74.83 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 1.03 Total: 24.43 kcal Atomic # 6 Polarization: -56.27 SS G_CDS: 4.92 Total: -51.35 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -4.63 Total: -85.88 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.59 Total: -12.63 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.05 Total: 50.61 kcal Total: -78.80 3.97 -74.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731211639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.052 kcal (2) G-P(sol) polarization free energy of solvation -78.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds