Wall clock time and date at job start Tue Mar 31 2020 15:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30435 * 125.99110 * 2 1 4 4 N 1.39937 * 108.91532 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.73775 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46887 * 90.02902 * 5 4 3 7 7 C 1.38234 * 120.00257 * 89.99927 * 6 5 4 8 8 C 1.38238 * 119.99675 * 180.27927 * 7 6 5 9 9 C 1.38228 * 120.00120 * 359.47825 * 8 7 6 10 10 C 1.38234 * 120.00000 * 0.52176 * 9 8 7 11 11 C 1.38234 * 119.99503 * 270.01528 * 6 5 4 12 12 C 1.34223 * 108.51364 * 0.26489 * 4 3 2 13 13 C 1.50698 * 126.29517 * 179.73786 * 12 4 3 14 14 C 1.38126 * 107.41108 * 359.58544 * 12 4 3 15 15 C 1.47287 * 126.43169 * 180.15428 * 14 12 4 16 16 O 1.21522 * 120.00183 * 270.28037 * 15 14 12 17 17 O 1.34758 * 119.99660 * 90.27525 * 15 14 12 18 18 C 1.45203 * 116.99763 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.46805 * 30.00131 * 18 17 15 20 20 C 1.52997 * 109.46926 * 270.00539 * 18 17 15 21 21 C 1.50694 * 109.46857 * 150.00085 * 18 17 15 22 22 H 1.08005 * 120.00311 * 0.02562 * 21 18 17 23 23 C 1.37875 * 119.99888 * 179.97438 * 21 18 17 24 24 N 1.31516 * 120.00205 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00300 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.46827 * 89.99954 * 25 23 21 27 27 H 1.48497 * 109.47283 * 210.00132 * 25 23 21 28 28 H 1.48504 * 109.46769 * 330.00012 * 25 23 21 29 29 H 1.09003 * 109.47345 * 90.01977 * 1 2 3 30 30 H 1.09005 * 109.47266 * 210.02175 * 1 2 3 31 31 H 1.08996 * 109.47516 * 330.01984 * 1 2 3 32 32 H 1.08988 * 109.47441 * 330.02285 * 5 4 3 33 33 H 1.09000 * 109.46440 * 210.02207 * 5 4 3 34 34 H 1.08002 * 119.99744 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.99577 * 179.72816 * 8 7 6 36 36 H 1.07999 * 119.99932 * 180.24104 * 9 8 7 37 37 H 1.08001 * 120.00310 * 179.72161 * 10 9 8 38 38 H 1.07997 * 120.00460 * 0.02562 * 11 6 5 39 39 H 1.08992 * 109.47285 * 90.00157 * 13 12 4 40 40 H 1.09004 * 109.47330 * 210.00186 * 13 12 4 41 41 H 1.09007 * 109.46966 * 329.99895 * 13 12 4 42 42 H 1.08992 * 109.47581 * 60.00051 * 20 18 17 43 43 H 1.09007 * 109.47095 * 180.02562 * 20 18 17 44 44 H 1.09002 * 109.47045 * 299.99444 * 20 18 17 45 45 H 0.96997 * 120.00487 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7783 1.5299 -0.0002 6 6 5.1792 1.8319 1.4207 7 6 6.0866 1.0168 2.0711 8 6 6.4499 1.2906 3.3764 9 6 5.9140 2.3857 4.0278 10 6 5.0066 3.2009 3.3775 11 6 4.6392 2.9240 2.0739 12 6 3.6448 -0.6973 -0.0068 13 6 4.8814 -1.5586 -0.0152 14 6 2.3377 -1.1436 -0.0007 15 6 1.8928 -2.5477 -0.0010 16 8 1.7085 -3.1265 -1.0536 17 8 1.6902 -3.1905 1.1659 18 6 1.2527 -4.5730 1.0896 19 1 1.6467 -5.0291 0.1813 20 6 -0.2762 -4.6233 1.0636 21 6 1.7599 -5.3274 2.2914 22 1 2.3515 -4.8187 3.0382 23 6 1.4678 -6.6668 2.4383 24 7 0.7470 -7.2862 1.5292 25 14 2.0959 -7.6019 3.9284 26 1 1.0956 -7.5185 5.0228 27 1 2.3137 -9.0249 3.5642 28 1 3.3778 -7.0055 4.3829 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 4.5297 2.4590 -0.5130 33 1 5.6053 1.0409 -0.5150 34 1 6.5080 0.1631 1.5609 35 1 7.1556 0.6511 3.8860 36 1 6.2009 2.6018 5.0463 37 1 4.5845 4.0539 3.8879 38 1 3.9298 3.5606 1.5661 39 1 5.1832 -1.7710 1.0103 40 1 4.6691 -2.4942 -0.5326 41 1 5.6864 -1.0335 -0.5296 42 1 -0.6431 -4.0776 0.1943 43 1 -0.6047 -5.6611 1.0068 44 1 -0.6702 -4.1672 1.9718 45 1 0.5418 -8.2286 1.6323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:00 Heat of formation + Delta-G solvation = 4.135059 kcal Electronic energy + Delta-G solvation = -27643.081534 eV Core-core repulsion = 23820.000551 eV Total energy + Delta-G solvation = -3823.080983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41259 -39.46622 -38.93143 -35.51948 -34.74711 -33.19138 -32.52498 -31.34619 -31.11758 -29.53932 -28.70877 -27.44798 -25.66926 -25.27585 -23.05322 -22.82844 -21.67231 -20.67604 -19.38983 -19.17530 -17.42379 -17.01851 -16.50967 -16.31002 -15.80060 -15.50521 -15.10876 -14.90366 -14.59894 -14.39298 -13.83798 -13.68769 -13.54201 -13.29429 -13.14186 -12.97479 -12.77145 -12.54522 -12.38973 -12.26018 -12.10978 -11.84432 -11.79475 -11.39700 -11.27034 -11.16183 -11.05778 -10.80814 -10.59713 -10.34111 -10.25418 -9.63992 -9.47316 -9.20060 -9.17789 -9.04084 -8.86562 -8.46709 -8.33937 -6.15263 -4.21808 0.90310 1.14198 1.79157 2.42102 2.62227 2.98091 3.26166 3.31611 3.35527 3.56059 3.92430 4.27081 4.34018 4.40803 4.56054 4.70311 4.73050 4.84466 4.90687 4.94721 5.06504 5.17618 5.22816 5.32054 5.39748 5.48852 5.65102 5.74669 5.75377 5.81439 5.88150 5.89619 6.04254 6.11790 6.16118 6.23978 6.25645 6.62288 6.69452 6.71914 6.92594 6.94580 6.97676 7.22617 7.63538 7.73145 7.77465 7.97952 8.18817 8.71109 8.95895 9.43595 10.92203 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003437 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.733389 B = 8144.205586 C = 9490.692227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.119 3.881 3 N -0.298 5.298 4 N -0.357 5.357 5 C 0.174 3.826 6 C -0.117 4.117 7 C -0.099 4.099 8 C -0.121 4.121 9 C -0.110 4.110 10 C -0.124 4.124 11 C -0.090 4.090 12 C 0.134 3.866 13 C -0.100 4.100 14 C -0.253 4.253 15 C 0.537 3.463 16 O -0.515 6.515 17 O -0.348 6.348 18 C 0.213 3.787 19 H 0.046 0.954 20 C -0.155 4.155 21 C -0.519 4.519 22 H 0.068 0.932 23 C 0.063 3.937 24 N -0.889 5.889 25 Si 0.910 3.090 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.272 1.272 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.017 0.983 43 H 0.099 0.901 44 H 0.037 0.963 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.323 19.986 0.074 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 N -0.119 5.119 4 N -0.137 5.137 5 C 0.054 3.946 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.139 4.139 9 C -0.128 4.128 10 C -0.142 4.142 11 C -0.108 4.108 12 C 0.004 3.996 13 C -0.158 4.158 14 C -0.265 4.265 15 C 0.379 3.621 16 O -0.404 6.404 17 O -0.264 6.264 18 C 0.161 3.839 19 H 0.064 0.936 20 C -0.213 4.213 21 C -0.557 4.557 22 H 0.086 0.914 23 C -0.139 4.139 24 N -0.527 5.527 25 Si 0.737 3.263 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.036 0.964 43 H 0.117 0.883 44 H 0.056 0.944 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.320 20.939 -0.272 23.346 hybrid contribution 0.208 -1.500 0.754 1.692 sum 10.527 19.439 0.482 22.112 Atomic orbital electron populations 1.20276 0.86092 1.03866 1.03389 1.22256 0.96824 0.88698 0.96939 1.77027 0.85762 1.22176 1.26945 1.48138 1.05295 1.03492 1.56787 1.20544 0.84833 0.95054 0.94219 1.19973 0.98796 0.96914 0.96153 1.21124 0.97041 0.98474 0.95122 1.21173 1.00410 0.97600 0.94744 1.21244 0.96760 0.94966 0.99863 1.21172 0.98100 1.00058 0.94854 1.21082 0.98172 0.96719 0.94868 1.21222 0.95960 0.84535 0.97866 1.20628 0.92060 0.98914 1.04232 1.19240 0.92210 0.92418 1.22656 1.20001 0.73751 0.85344 0.83031 1.90775 1.48414 1.67834 1.33411 1.86661 1.76451 1.31319 1.31954 1.20639 0.92003 0.72164 0.99091 0.93604 1.22162 0.97451 1.04010 0.97660 1.21026 1.33955 0.93986 1.06700 0.91382 1.24874 0.95007 0.97019 0.97024 1.69900 1.37714 1.10948 1.34170 0.86300 0.79300 0.78696 0.81992 1.20367 1.20983 1.19666 0.90055 0.89929 0.90428 0.87669 0.87941 0.85775 0.85670 0.85914 0.85853 0.85720 0.89105 0.88971 0.90720 0.96436 0.88269 0.94434 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.28 36.00 0.37 -0.74 16 2 C 0.12 2.05 7.27 -82.00 -0.60 1.45 16 3 N -0.30 -4.74 12.50 33.90 0.42 -4.32 16 4 N -0.36 -4.97 3.56 -57.76 -0.21 -5.18 16 5 C 0.17 1.66 6.34 -5.19 -0.03 1.63 16 6 C -0.12 -1.17 5.46 -104.62 -0.57 -1.74 16 7 C -0.10 -0.94 9.70 -39.58 -0.38 -1.33 16 8 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 9 C -0.11 -0.97 10.05 -39.59 -0.40 -1.37 16 10 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 11 C -0.09 -0.88 9.70 -39.58 -0.38 -1.27 16 12 C 0.13 2.10 7.01 -81.59 -0.57 1.52 16 13 C -0.10 -1.24 9.68 36.00 0.35 -0.89 16 14 C -0.25 -4.81 6.00 -105.08 -0.63 -5.44 16 15 C 0.54 12.23 7.10 34.41 0.24 12.47 16 16 O -0.51 -12.93 16.37 -19.28 -0.32 -13.24 16 17 O -0.35 -8.74 9.87 -40.65 -0.40 -9.14 16 18 C 0.21 5.85 2.56 -27.89 -0.07 5.78 16 19 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 20 C -0.16 -4.00 9.33 37.16 0.35 -3.65 16 21 C -0.52 -14.71 8.90 -34.44 -0.31 -15.02 16 22 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 23 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 24 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 25 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.11 0.85 8.08 -51.94 -0.42 0.43 16 33 H 0.10 0.71 6.95 -51.93 -0.36 0.35 16 34 H 0.12 0.98 7.81 -52.49 -0.41 0.57 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.29 7.97 -51.93 -0.41 0.88 16 41 H 0.07 0.64 7.05 -51.92 -0.37 0.27 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 44 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -34.15 387.41 -9.00 -43.16 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.42 Total: 1.50 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.53 Total: -9.98 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.85 Total: -34.24 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.72 Total: -22.39 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.15 -9.00 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.291 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds