Wall clock time and date at job start Tue Mar 31 2020 15:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30435 * 125.99110 * 2 1 4 4 N 1.39937 * 108.91532 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.73775 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46887 * 90.02902 * 5 4 3 7 7 C 1.38234 * 120.00257 * 89.99927 * 6 5 4 8 8 C 1.38238 * 119.99675 * 180.27927 * 7 6 5 9 9 C 1.38228 * 120.00120 * 359.47825 * 8 7 6 10 10 C 1.38234 * 120.00000 * 0.52176 * 9 8 7 11 11 C 1.38234 * 119.99503 * 270.01528 * 6 5 4 12 12 C 1.34223 * 108.51364 * 0.26489 * 4 3 2 13 13 C 1.50698 * 126.29517 * 179.73786 * 12 4 3 14 14 C 1.38126 * 107.41108 * 359.58544 * 12 4 3 15 15 C 1.47287 * 126.43169 * 180.15428 * 14 12 4 16 16 O 1.21522 * 120.00183 * 270.28037 * 15 14 12 17 17 O 1.34758 * 119.99660 * 90.27525 * 15 14 12 18 18 C 1.45203 * 116.99763 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.46805 * 30.00131 * 18 17 15 20 20 C 1.52997 * 109.46926 * 270.00539 * 18 17 15 21 21 C 1.50694 * 109.46857 * 150.00085 * 18 17 15 22 22 H 1.08005 * 120.00311 * 0.02562 * 21 18 17 23 23 C 1.37875 * 119.99888 * 179.97438 * 21 18 17 24 24 N 1.31516 * 120.00205 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00300 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.46827 * 89.99954 * 25 23 21 27 27 H 1.48497 * 109.47283 * 210.00132 * 25 23 21 28 28 H 1.48504 * 109.46769 * 330.00012 * 25 23 21 29 29 H 1.09003 * 109.47345 * 90.01977 * 1 2 3 30 30 H 1.09005 * 109.47266 * 210.02175 * 1 2 3 31 31 H 1.08996 * 109.47516 * 330.01984 * 1 2 3 32 32 H 1.08988 * 109.47441 * 330.02285 * 5 4 3 33 33 H 1.09000 * 109.46440 * 210.02207 * 5 4 3 34 34 H 1.08002 * 119.99744 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.99577 * 179.72816 * 8 7 6 36 36 H 1.07999 * 119.99932 * 180.24104 * 9 8 7 37 37 H 1.08001 * 120.00310 * 179.72161 * 10 9 8 38 38 H 1.07997 * 120.00460 * 0.02562 * 11 6 5 39 39 H 1.08992 * 109.47285 * 90.00157 * 13 12 4 40 40 H 1.09004 * 109.47330 * 210.00186 * 13 12 4 41 41 H 1.09007 * 109.46966 * 329.99895 * 13 12 4 42 42 H 1.08992 * 109.47581 * 60.00051 * 20 18 17 43 43 H 1.09007 * 109.47095 * 180.02562 * 20 18 17 44 44 H 1.09002 * 109.47045 * 299.99444 * 20 18 17 45 45 H 0.96997 * 120.00487 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7783 1.5299 -0.0002 6 6 5.1792 1.8319 1.4207 7 6 6.0866 1.0168 2.0711 8 6 6.4499 1.2906 3.3764 9 6 5.9140 2.3857 4.0278 10 6 5.0066 3.2009 3.3775 11 6 4.6392 2.9240 2.0739 12 6 3.6448 -0.6973 -0.0068 13 6 4.8814 -1.5586 -0.0152 14 6 2.3377 -1.1436 -0.0007 15 6 1.8928 -2.5477 -0.0010 16 8 1.7085 -3.1265 -1.0536 17 8 1.6902 -3.1905 1.1659 18 6 1.2527 -4.5730 1.0896 19 1 1.6467 -5.0291 0.1813 20 6 -0.2762 -4.6233 1.0636 21 6 1.7599 -5.3274 2.2914 22 1 2.3515 -4.8187 3.0382 23 6 1.4678 -6.6668 2.4383 24 7 0.7470 -7.2862 1.5292 25 14 2.0959 -7.6019 3.9284 26 1 1.0956 -7.5185 5.0228 27 1 2.3137 -9.0249 3.5642 28 1 3.3778 -7.0055 4.3829 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 4.5297 2.4590 -0.5130 33 1 5.6053 1.0409 -0.5150 34 1 6.5080 0.1631 1.5609 35 1 7.1556 0.6511 3.8860 36 1 6.2009 2.6018 5.0463 37 1 4.5845 4.0539 3.8879 38 1 3.9298 3.5606 1.5661 39 1 5.1832 -1.7710 1.0103 40 1 4.6691 -2.4942 -0.5326 41 1 5.6864 -1.0335 -0.5296 42 1 -0.6431 -4.0776 0.1943 43 1 -0.6047 -5.6611 1.0068 44 1 -0.6702 -4.1672 1.9718 45 1 0.5418 -8.2286 1.6323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:00 Heat of formation + Delta-G solvation = -13.793575 kcal Electronic energy + Delta-G solvation = -27643.858978 eV Core-core repulsion = 23820.000551 eV Total energy + Delta-G solvation = -3823.858427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.63656 -40.90573 -40.06270 -37.48305 -35.75929 -35.29186 -33.58272 -32.40606 -31.83651 -31.55440 -29.71443 -28.68226 -27.44364 -26.65793 -24.57755 -23.55502 -22.74284 -22.24967 -20.82523 -20.49835 -18.95917 -18.50718 -17.99894 -17.67233 -17.04509 -16.68626 -16.46795 -16.29299 -15.95207 -15.75913 -14.99764 -14.88254 -14.49703 -14.40473 -14.32502 -14.14907 -14.09555 -13.79836 -13.56142 -13.45525 -13.37372 -13.24241 -13.14941 -12.98824 -12.89861 -12.79269 -12.39094 -12.16156 -12.12799 -11.97312 -11.90655 -11.57342 -11.41188 -10.98865 -10.58731 -10.23926 -9.86184 -9.85295 -9.65807 -8.27107 -6.44147 0.15677 0.46332 0.59794 1.19301 1.24278 1.42402 1.43760 1.45134 1.56605 2.19385 2.47240 2.85968 3.03346 3.35601 3.47151 3.62842 3.79451 3.90014 4.07759 4.14308 4.16735 4.24761 4.27252 4.34359 4.52040 4.55525 4.59685 4.64045 4.64983 4.69707 4.80028 4.82642 4.84302 4.89296 4.94427 5.00634 5.10798 5.16582 5.39024 5.49296 5.49958 5.56003 5.58021 5.62924 5.84311 5.90351 6.04680 6.07220 6.49870 6.60248 6.96791 7.27665 8.80797 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003437 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.733389 B = 8144.205586 C = 9490.692227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.110 3.890 3 N -0.302 5.302 4 N -0.343 5.343 5 C 0.165 3.835 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.134 4.134 9 C -0.117 4.117 10 C -0.134 4.134 11 C -0.104 4.104 12 C 0.147 3.853 13 C -0.102 4.102 14 C -0.303 4.303 15 C 0.545 3.455 16 O -0.546 6.546 17 O -0.356 6.356 18 C 0.217 3.783 19 H 0.009 0.991 20 C -0.143 4.143 21 C -0.547 4.547 22 H 0.065 0.935 23 C 0.019 3.981 24 N -0.917 5.917 25 Si 0.982 3.018 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.264 1.264 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.024 0.976 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 21.152 1.275 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 N -0.124 5.124 4 N -0.122 5.122 5 C 0.046 3.954 6 C -0.130 4.130 7 C -0.127 4.127 8 C -0.152 4.152 9 C -0.135 4.135 10 C -0.152 4.152 11 C -0.123 4.123 12 C 0.015 3.985 13 C -0.160 4.160 14 C -0.316 4.316 15 C 0.389 3.611 16 O -0.438 6.438 17 O -0.272 6.272 18 C 0.163 3.837 19 H 0.027 0.973 20 C -0.201 4.201 21 C -0.584 4.584 22 H 0.084 0.916 23 C -0.181 4.181 24 N -0.554 5.554 25 Si 0.805 3.195 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.189 1.189 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.043 0.957 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.087 22.156 0.922 25.256 hybrid contribution -0.257 -1.759 0.360 1.814 sum 11.830 20.398 1.282 23.615 Atomic orbital electron populations 1.20339 0.84937 1.04107 1.04219 1.22566 0.97919 0.88199 0.96996 1.76985 0.86723 1.21689 1.26977 1.48524 1.05687 1.03356 1.54650 1.21031 0.84086 0.95438 0.94803 1.20036 0.99375 0.97300 0.96321 1.21405 0.96974 0.98865 0.95474 1.21488 1.00758 0.97983 0.94933 1.21567 0.96388 0.94747 1.00813 1.21450 0.98224 1.00728 0.94831 1.21287 0.98488 0.97096 0.95426 1.21588 0.95751 0.85563 0.95593 1.20785 0.92009 0.97991 1.05176 1.19213 0.94502 0.90476 1.27398 1.20583 0.72347 0.86445 0.81768 1.90738 1.49816 1.69032 1.34175 1.86660 1.76845 1.30252 1.33485 1.20396 0.92597 0.73294 0.97371 0.97312 1.21994 0.96642 1.03092 0.98328 1.21257 1.35103 0.94990 1.07092 0.91645 1.25811 0.94697 0.97554 1.00060 1.70015 1.38077 1.11495 1.35854 0.85196 0.79034 0.77242 0.78029 1.19318 1.20107 1.18854 0.88929 0.91653 0.88112 0.86112 0.84743 0.84180 0.84128 0.84076 0.84306 0.85422 0.88144 0.91074 0.86157 0.95703 0.89849 0.93644 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.23 10.28 71.23 0.73 -1.50 16 2 C 0.11 3.75 7.27 43.53 0.32 4.06 16 3 N -0.30 -9.27 12.50 -46.65 -0.58 -9.85 16 4 N -0.34 -8.89 3.56 -336.67 -1.20 -10.09 16 5 C 0.16 2.66 6.34 85.63 0.54 3.20 16 6 C -0.13 -2.28 5.46 -19.87 -0.11 -2.39 16 7 C -0.11 -1.79 9.70 22.27 0.22 -1.58 16 8 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 9 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 10 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 11 C -0.10 -1.88 9.70 22.27 0.22 -1.66 16 12 C 0.15 4.45 7.01 42.17 0.30 4.75 16 13 C -0.10 -2.34 9.68 71.24 0.69 -1.65 16 14 C -0.30 -11.68 6.00 -20.16 -0.12 -11.80 16 15 C 0.54 25.77 7.10 70.20 0.50 26.27 16 16 O -0.55 -28.77 16.37 19.76 0.32 -28.45 16 17 O -0.36 -18.58 9.87 -56.69 -0.56 -19.14 16 18 C 0.22 12.33 2.56 29.85 0.08 12.40 16 19 H 0.01 0.57 7.16 -2.39 -0.02 0.55 16 20 C -0.14 -7.60 9.33 71.98 0.67 -6.93 16 21 C -0.55 -31.63 8.90 25.60 0.23 -31.40 16 22 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 23 C 0.02 1.03 5.30 84.65 0.45 1.48 16 24 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 25 Si 0.98 42.94 29.54 68.60 2.03 44.97 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 2.08 8.01 -2.38 -0.02 2.06 16 31 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.12 1.61 8.08 -2.39 -0.02 1.59 16 33 H 0.13 1.31 6.95 -2.39 -0.02 1.29 16 34 H 0.14 1.75 7.81 -2.91 -0.02 1.72 16 35 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 1.98 7.97 -2.39 -0.02 1.96 16 41 H 0.12 1.61 7.05 -2.38 -0.02 1.59 16 42 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 4.70 6.07 -2.38 -0.01 4.69 16 44 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -75.80 387.41 6.62 -69.18 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.99 Total: 18.37 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.37 Total: -12.25 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.54 Total: -72.68 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.24 Total: -47.59 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -75.80 6.62 -69.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.388 kcal (2) G-P(sol) polarization free energy of solvation -75.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds