Wall clock time and date at job start Tue Mar 31 2020 15:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39925 * 125.87929 * 2 1 4 4 C 1.35321 * 107.93243 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.14349 * 179.97438 * 4 3 2 6 6 N 1.35228 * 107.71103 * 0.02562 * 4 3 2 7 7 C 1.40183 * 126.05162 * 179.97438 * 6 4 3 8 8 C 1.38840 * 120.06772 * 144.99271 * 7 6 4 9 9 C 1.38116 * 119.93399 * 180.02562 * 8 7 6 10 10 C 1.38276 * 120.06477 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.92981 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47478 * 90.00477 * 11 10 9 13 13 O 1.20833 * 119.99655 * 359.97438 * 12 11 10 14 14 O 1.34222 * 120.00432 * 180.27536 * 12 11 10 15 15 C 1.45201 * 117.00137 * 179.71953 * 14 12 11 16 16 H 1.08993 * 109.47491 * 330.00073 * 15 14 12 17 17 C 1.52996 * 109.46934 * 90.00375 * 15 14 12 18 18 C 1.50704 * 109.46907 * 209.99697 * 15 14 12 19 19 H 1.07998 * 120.00571 * 0.02562 * 18 15 14 20 20 C 1.37887 * 119.99671 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00086 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99784 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46793 * 90.00407 * 22 20 18 24 24 H 1.48497 * 109.47311 * 210.00105 * 22 20 18 25 25 H 1.48491 * 109.47214 * 330.00626 * 22 20 18 26 26 C 1.38275 * 120.13727 * 0.27398 * 10 9 8 27 27 C 1.38115 * 120.06517 * 359.45217 * 26 10 9 28 28 N 1.30877 * 125.87718 * 180.35485 * 2 1 3 29 29 H 1.08998 * 109.47593 * 89.99662 * 1 2 3 30 30 H 1.08998 * 109.46698 * 209.99787 * 1 2 3 31 31 H 1.09004 * 109.46750 * 329.99048 * 1 2 3 32 32 H 1.07994 * 126.03369 * 0.02562 * 3 2 1 33 33 H 1.09009 * 109.47275 * 270.02348 * 5 4 3 34 34 H 1.09001 * 109.47636 * 30.02417 * 5 4 3 35 35 H 1.09005 * 109.47300 * 150.02790 * 5 4 3 36 36 H 1.08000 * 120.03305 * 0.04874 * 8 7 6 37 37 H 1.08002 * 119.96544 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47523 * 329.99930 * 11 10 9 39 39 H 1.09006 * 109.46998 * 209.99818 * 11 10 9 40 40 H 1.09005 * 109.47320 * 299.99428 * 17 15 14 41 41 H 1.08999 * 109.47835 * 59.99944 * 17 15 14 42 42 H 1.09004 * 109.47062 * 180.02562 * 17 15 14 43 43 H 0.96993 * 119.99970 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.96883 * 179.70318 * 26 10 9 45 45 H 1.08005 * 120.03862 * 180.27208 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1338 0.0000 4 6 3.6144 0.7168 -0.0006 5 6 4.8349 1.6006 -0.0013 6 7 3.6089 -0.6355 -0.0015 7 6 4.7388 -1.4651 -0.0028 8 6 4.7175 -2.6706 0.6857 9 6 5.8326 -3.4857 0.6829 10 6 6.9695 -3.1018 -0.0041 11 6 8.1846 -3.9932 -0.0046 12 6 8.1078 -4.9467 -1.1690 13 8 7.1629 -4.9069 -1.9211 14 8 9.0859 -5.8443 -1.3672 15 6 8.9427 -6.7350 -2.5050 16 1 7.8844 -6.9058 -2.7017 17 6 9.5941 -6.0998 -3.7350 18 6 9.6159 -8.0489 -2.2022 19 1 10.1023 -8.1996 -1.2498 20 6 9.6098 -9.0590 -3.1408 21 7 9.0170 -8.8756 -4.3003 22 14 10.4449 -10.6873 -2.7658 23 1 9.4691 -11.6093 -2.1309 24 1 10.9456 -11.2890 -4.0276 25 1 11.5836 -10.4582 -1.8406 26 6 6.9959 -1.8990 -0.6857 27 6 5.8821 -1.0823 -0.6913 28 7 2.2740 -1.0604 -0.0066 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9918 2.1603 0.0004 33 1 5.1285 1.8139 -1.0293 34 1 4.6077 2.5345 0.5128 35 1 5.6517 1.0928 0.5118 36 1 3.8298 -2.9709 1.2225 37 1 5.8167 -4.4233 1.2187 38 1 8.2207 -4.5589 0.9264 39 1 9.0832 -3.3826 -0.0938 40 1 9.1072 -5.1495 -3.9541 41 1 10.6525 -5.9290 -3.5384 42 1 9.4862 -6.7683 -4.5893 43 1 9.0131 -9.5860 -4.9607 44 1 7.8870 -1.5997 -1.2174 45 1 5.9017 -0.1449 -1.2274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:48 Heat of formation + Delta-G solvation = 5.992357 kcal Electronic energy + Delta-G solvation = -26575.583871 eV Core-core repulsion = 22752.583426 eV Total energy + Delta-G solvation = -3823.000445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81338 -39.92265 -38.90084 -35.83239 -34.62360 -33.27929 -32.83131 -31.72499 -31.00743 -29.75667 -28.91178 -27.36321 -26.41512 -25.32480 -23.13792 -22.70854 -21.33205 -20.41182 -19.78501 -19.55341 -17.72284 -16.97033 -16.70110 -16.10036 -15.74741 -15.45591 -15.17723 -14.80367 -14.73934 -14.34904 -14.01967 -13.89829 -13.73741 -13.47906 -13.32954 -13.13692 -12.90207 -12.75523 -12.52719 -12.34781 -12.20831 -11.98888 -11.73511 -11.61072 -11.25352 -11.15729 -11.06315 -10.86145 -10.72996 -10.37929 -10.29716 -9.95893 -9.63169 -9.53980 -9.12878 -9.04213 -8.91888 -8.50564 -8.20110 -6.19528 -4.26655 0.72386 1.21797 1.84561 2.21604 2.49790 2.98172 3.23661 3.28638 3.32055 3.40232 3.89939 4.27607 4.32801 4.35241 4.60547 4.61976 4.73309 4.76625 5.03393 5.09918 5.13281 5.14804 5.20638 5.30884 5.34705 5.36483 5.46564 5.49727 5.56255 5.59993 5.66491 5.78511 5.84609 5.89781 6.08912 6.16024 6.43154 6.47572 6.58529 6.63636 6.86764 6.90124 7.05929 7.16257 7.51004 7.58870 7.71550 7.93147 8.12911 8.62515 8.87209 9.38855 10.87882 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.002131 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.731141 B =13133.653203 C =13543.275857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.075 3.925 3 C -0.269 4.269 4 C 0.087 3.913 5 C -0.098 4.098 6 N -0.319 5.319 7 C 0.145 3.855 8 C -0.107 4.107 9 C -0.083 4.083 10 C -0.063 4.063 11 C -0.080 4.080 12 C 0.451 3.549 13 O -0.513 6.513 14 O -0.357 6.357 15 C 0.215 3.785 16 H 0.046 0.954 17 C -0.154 4.154 18 C -0.521 4.521 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.912 3.088 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.271 1.271 26 C -0.083 4.083 27 C -0.129 4.129 28 N -0.288 5.288 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.015 0.985 41 H 0.037 0.963 42 H 0.099 0.901 43 H 0.266 0.734 44 H 0.134 0.866 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 21.747 10.918 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C -0.297 4.297 4 C -0.037 4.037 5 C -0.156 4.156 6 N -0.095 5.095 7 C 0.054 3.946 8 C -0.126 4.126 9 C -0.102 4.102 10 C -0.063 4.063 11 C -0.118 4.118 12 C 0.293 3.707 13 O -0.403 6.403 14 O -0.274 6.274 15 C 0.163 3.837 16 H 0.064 0.936 17 C -0.212 4.212 18 C -0.559 4.559 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.739 3.261 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.101 4.101 27 C -0.150 4.150 28 N -0.108 5.108 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.034 0.966 41 H 0.056 0.944 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.328 20.301 10.477 24.676 hybrid contribution 0.254 -0.060 -0.165 0.309 sum -9.074 20.241 10.313 24.462 Atomic orbital electron populations 1.20188 0.86373 1.03353 1.03123 1.22470 0.97132 0.90750 0.98853 1.21139 0.90738 0.99853 1.18010 1.21224 0.97630 0.83967 1.00906 1.20639 0.93300 0.98125 1.03525 1.45730 1.04216 1.03489 1.56022 1.17426 0.84531 0.92402 1.00240 1.20896 0.99187 0.93290 0.99276 1.20952 0.91619 0.98984 0.98627 1.19485 0.95028 0.94512 0.97321 1.20325 0.97561 0.96022 0.97866 1.23131 0.81180 0.80987 0.85406 1.90642 1.33595 1.69444 1.46583 1.86475 1.45396 1.43878 1.51620 1.20633 0.98408 0.85545 0.79109 0.93599 1.22156 0.98694 0.98630 1.01719 1.21025 1.36396 0.96019 1.02473 0.91297 1.24906 0.95379 0.99092 0.94698 1.69898 1.42958 1.33602 1.06207 0.86266 0.79600 0.82396 0.77829 1.20398 1.20949 1.19580 1.20853 0.98116 0.93455 0.97718 1.20963 0.92513 1.01542 0.99932 1.77516 0.85440 1.22455 1.25375 0.90377 0.90803 0.90338 0.83233 0.89862 0.89513 0.90405 0.84984 0.84851 0.86982 0.87079 0.96570 0.94428 0.88270 0.92384 0.84844 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.45 36.00 0.38 -0.17 16 2 C 0.07 0.86 7.22 -82.37 -0.59 0.27 16 3 C -0.27 -2.75 10.65 -39.99 -0.43 -3.17 16 4 C 0.09 0.95 6.76 -82.14 -0.56 0.39 16 5 C -0.10 -0.68 8.59 36.00 0.31 -0.37 16 6 N -0.32 -4.31 3.73 -6.98 -0.03 -4.34 16 7 C 0.14 1.96 6.28 -83.59 -0.52 1.43 16 8 C -0.11 -1.44 9.77 -39.40 -0.38 -1.83 16 9 C -0.08 -1.10 9.69 -39.61 -0.38 -1.48 16 10 C -0.06 -0.84 4.38 -104.59 -0.46 -1.30 16 11 C -0.08 -1.08 5.94 -29.04 -0.17 -1.25 16 12 C 0.45 9.07 7.92 36.00 0.29 9.35 16 13 O -0.51 -12.05 15.25 -18.76 -0.29 -12.34 16 14 O -0.36 -8.33 9.86 -39.24 -0.39 -8.71 16 15 C 0.22 5.79 2.56 -27.88 -0.07 5.72 16 16 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 17 C -0.15 -3.92 9.32 37.16 0.35 -3.57 16 18 C -0.52 -14.62 8.90 -34.43 -0.31 -14.92 16 19 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 22 Si 0.91 21.08 29.54 -169.99 -5.02 16.05 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.08 -1.01 9.69 -39.61 -0.38 -1.39 16 27 C -0.13 -1.54 8.28 -39.40 -0.33 -1.86 16 28 N -0.29 -4.17 12.34 33.69 0.42 -3.76 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.08 0.48 7.74 -51.92 -0.40 0.08 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.54 6.88 -51.93 -0.36 0.18 16 36 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.26 8.08 -51.93 -0.42 0.84 16 39 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.13 1.26 6.08 -52.48 -0.32 0.94 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -34.54 382.38 -8.66 -43.20 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.38 Total: 1.46 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -3.36 Total: -12.55 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 1.02 Total: -32.87 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.67 Total: -21.05 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.54 -8.66 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.190 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds