Wall clock time and date at job start Tue Mar 31 2020 15:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39925 * 125.87929 * 2 1 4 4 C 1.35321 * 107.93243 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.14349 * 179.97438 * 4 3 2 6 6 N 1.35228 * 107.71103 * 0.02562 * 4 3 2 7 7 C 1.40183 * 126.05162 * 179.97438 * 6 4 3 8 8 C 1.38840 * 120.06772 * 144.99271 * 7 6 4 9 9 C 1.38116 * 119.93399 * 180.02562 * 8 7 6 10 10 C 1.38276 * 120.06477 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.92981 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47478 * 90.00477 * 11 10 9 13 13 O 1.20833 * 119.99655 * 359.97438 * 12 11 10 14 14 O 1.34222 * 120.00432 * 180.27536 * 12 11 10 15 15 C 1.45201 * 117.00137 * 179.71953 * 14 12 11 16 16 H 1.08993 * 109.47491 * 330.00073 * 15 14 12 17 17 C 1.52996 * 109.46934 * 90.00375 * 15 14 12 18 18 C 1.50704 * 109.46907 * 209.99697 * 15 14 12 19 19 H 1.07998 * 120.00571 * 0.02562 * 18 15 14 20 20 C 1.37887 * 119.99671 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00086 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99784 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46793 * 90.00407 * 22 20 18 24 24 H 1.48497 * 109.47311 * 210.00105 * 22 20 18 25 25 H 1.48491 * 109.47214 * 330.00626 * 22 20 18 26 26 C 1.38275 * 120.13727 * 0.27398 * 10 9 8 27 27 C 1.38115 * 120.06517 * 359.45217 * 26 10 9 28 28 N 1.30877 * 125.87718 * 180.35485 * 2 1 3 29 29 H 1.08998 * 109.47593 * 89.99662 * 1 2 3 30 30 H 1.08998 * 109.46698 * 209.99787 * 1 2 3 31 31 H 1.09004 * 109.46750 * 329.99048 * 1 2 3 32 32 H 1.07994 * 126.03369 * 0.02562 * 3 2 1 33 33 H 1.09009 * 109.47275 * 270.02348 * 5 4 3 34 34 H 1.09001 * 109.47636 * 30.02417 * 5 4 3 35 35 H 1.09005 * 109.47300 * 150.02790 * 5 4 3 36 36 H 1.08000 * 120.03305 * 0.04874 * 8 7 6 37 37 H 1.08002 * 119.96544 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47523 * 329.99930 * 11 10 9 39 39 H 1.09006 * 109.46998 * 209.99818 * 11 10 9 40 40 H 1.09005 * 109.47320 * 299.99428 * 17 15 14 41 41 H 1.08999 * 109.47835 * 59.99944 * 17 15 14 42 42 H 1.09004 * 109.47062 * 180.02562 * 17 15 14 43 43 H 0.96993 * 119.99970 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.96883 * 179.70318 * 26 10 9 45 45 H 1.08005 * 120.03862 * 180.27208 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1338 0.0000 4 6 3.6144 0.7168 -0.0006 5 6 4.8349 1.6006 -0.0013 6 7 3.6089 -0.6355 -0.0015 7 6 4.7388 -1.4651 -0.0028 8 6 4.7175 -2.6706 0.6857 9 6 5.8326 -3.4857 0.6829 10 6 6.9695 -3.1018 -0.0041 11 6 8.1846 -3.9932 -0.0046 12 6 8.1078 -4.9467 -1.1690 13 8 7.1629 -4.9069 -1.9211 14 8 9.0859 -5.8443 -1.3672 15 6 8.9427 -6.7350 -2.5050 16 1 7.8844 -6.9058 -2.7017 17 6 9.5941 -6.0998 -3.7350 18 6 9.6159 -8.0489 -2.2022 19 1 10.1023 -8.1996 -1.2498 20 6 9.6098 -9.0590 -3.1408 21 7 9.0170 -8.8756 -4.3003 22 14 10.4449 -10.6873 -2.7658 23 1 9.4691 -11.6093 -2.1309 24 1 10.9456 -11.2890 -4.0276 25 1 11.5836 -10.4582 -1.8406 26 6 6.9959 -1.8990 -0.6857 27 6 5.8821 -1.0823 -0.6913 28 7 2.2740 -1.0604 -0.0066 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9918 2.1603 0.0004 33 1 5.1285 1.8139 -1.0293 34 1 4.6077 2.5345 0.5128 35 1 5.6517 1.0928 0.5118 36 1 3.8298 -2.9709 1.2225 37 1 5.8167 -4.4233 1.2187 38 1 8.2207 -4.5589 0.9264 39 1 9.0832 -3.3826 -0.0938 40 1 9.1072 -5.1495 -3.9541 41 1 10.6525 -5.9290 -3.5384 42 1 9.4862 -6.7683 -4.5893 43 1 9.0131 -9.5860 -4.9607 44 1 7.8870 -1.5997 -1.2174 45 1 5.9017 -0.1449 -1.2274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:47 Heat of formation + Delta-G solvation = -12.408882 kcal Electronic energy + Delta-G solvation = -26576.381809 eV Core-core repulsion = 22752.583426 eV Total energy + Delta-G solvation = -3823.798383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66135 -41.41404 -40.10104 -37.60045 -35.59993 -35.32348 -33.67099 -32.68597 -31.96076 -31.62190 -29.89556 -28.05775 -27.52388 -27.35456 -24.18921 -24.00837 -22.79458 -21.36275 -21.16666 -20.60572 -18.86321 -18.57152 -18.48804 -17.27074 -17.22463 -16.76458 -16.61293 -16.05459 -15.93552 -15.57429 -14.87779 -14.79272 -14.69958 -14.55765 -14.29740 -14.19447 -14.00263 -13.89741 -13.75633 -13.35076 -13.30526 -13.21049 -12.97107 -12.92208 -12.89185 -12.81410 -12.53970 -12.38210 -12.15152 -12.12575 -11.58478 -11.56503 -11.39036 -10.98332 -10.78782 -10.60561 -10.09040 -9.89193 -9.13403 -8.29271 -6.46220 -0.23914 0.25272 0.96130 1.36592 1.38543 1.41974 1.43529 1.55369 1.71158 2.04571 2.39475 2.72128 3.01548 3.48809 3.55797 3.62901 3.76971 3.82741 4.01827 4.09622 4.23624 4.26371 4.43705 4.49505 4.53353 4.54583 4.63833 4.64528 4.71265 4.76060 4.77837 4.81096 4.83936 4.91841 4.99303 5.02797 5.10860 5.13602 5.19376 5.30648 5.45033 5.48804 5.61630 5.64751 5.74554 5.93532 6.11513 6.19311 6.60258 6.65828 7.00099 7.26338 8.78325 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.002131 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.731141 B =13133.653203 C =13543.275857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.068 3.932 3 C -0.275 4.275 4 C 0.080 3.920 5 C -0.097 4.097 6 N -0.337 5.337 7 C 0.135 3.865 8 C -0.125 4.125 9 C -0.090 4.090 10 C -0.080 4.080 11 C -0.064 4.064 12 C 0.445 3.555 13 O -0.552 6.552 14 O -0.362 6.362 15 C 0.217 3.783 16 H 0.003 0.997 17 C -0.141 4.141 18 C -0.547 4.547 19 H 0.070 0.930 20 C 0.013 3.987 21 N -0.919 5.919 22 Si 0.984 3.016 23 H -0.273 1.273 24 H -0.276 1.276 25 H -0.260 1.260 26 C -0.082 4.082 27 C -0.128 4.128 28 N -0.343 5.343 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.023 0.977 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.270 0.730 44 H 0.157 0.843 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 23.439 11.786 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 C -0.303 4.303 4 C -0.044 4.044 5 C -0.154 4.154 6 N -0.114 5.114 7 C 0.044 3.956 8 C -0.145 4.145 9 C -0.108 4.108 10 C -0.081 4.081 11 C -0.101 4.101 12 C 0.290 3.710 13 O -0.444 6.444 14 O -0.279 6.279 15 C 0.164 3.836 16 H 0.021 0.979 17 C -0.199 4.199 18 C -0.584 4.584 19 H 0.088 0.912 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.807 3.193 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.100 4.100 27 C -0.148 4.148 28 N -0.164 5.164 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.198 0.802 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.175 0.825 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.265 22.025 11.365 26.127 hybrid contribution -0.219 -0.460 -0.424 0.663 sum -8.484 21.566 10.941 25.627 Atomic orbital electron populations 1.20338 0.84082 1.04467 1.04000 1.23185 0.98722 0.90725 0.97200 1.21583 0.90360 1.00873 1.17461 1.21994 0.99448 0.83322 0.99615 1.20797 0.91609 0.98249 1.04787 1.45867 1.03855 1.04482 1.57150 1.17710 0.85264 0.92514 1.00156 1.20942 0.99248 0.94106 1.00176 1.21117 0.91642 0.99238 0.98828 1.19575 0.95001 0.95197 0.98312 1.20447 0.99198 0.94997 0.95476 1.24466 0.79602 0.80468 0.86438 1.90628 1.34840 1.70387 1.48522 1.86466 1.46770 1.44349 1.50311 1.20298 0.95786 0.86644 0.80868 0.97917 1.21968 0.99283 0.98264 1.00388 1.21323 1.37097 0.97103 1.02881 0.91188 1.25875 0.95690 1.02796 0.94297 1.70027 1.43666 1.34875 1.07090 0.85168 0.78720 0.77418 0.78028 1.19884 1.20156 1.18398 1.21185 0.98974 0.92936 0.96934 1.21205 0.91790 1.02371 0.99482 1.77455 0.86472 1.24538 1.27956 0.89482 0.91252 0.87642 0.80236 0.88374 0.87108 0.90431 0.85750 0.84068 0.84370 0.83454 0.95782 0.93270 0.90366 0.92067 0.82530 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.45 71.24 0.74 -0.26 16 2 C 0.07 1.55 7.22 43.11 0.31 1.86 16 3 C -0.27 -5.18 10.65 22.01 0.23 -4.95 16 4 C 0.08 1.63 6.76 41.36 0.28 1.91 16 5 C -0.10 -1.09 8.59 71.23 0.61 -0.48 16 6 N -0.34 -9.17 3.73 -176.00 -0.66 -9.83 16 7 C 0.13 3.66 6.28 38.09 0.24 3.90 16 8 C -0.12 -3.50 9.77 22.38 0.22 -3.28 16 9 C -0.09 -2.38 9.69 22.25 0.22 -2.16 16 10 C -0.08 -2.05 4.38 -19.85 -0.09 -2.14 16 11 C -0.06 -1.60 5.94 29.10 0.17 -1.43 16 12 C 0.45 17.80 7.92 71.23 0.56 18.36 16 13 O -0.55 -26.53 15.25 21.94 0.33 -26.20 16 14 O -0.36 -16.91 9.86 -51.34 -0.51 -17.42 16 15 C 0.22 11.96 2.56 29.85 0.08 12.04 16 16 H 0.00 0.19 7.16 -2.39 -0.02 0.17 16 17 C -0.14 -7.28 9.32 71.98 0.67 -6.61 16 18 C -0.55 -30.97 8.90 25.60 0.23 -30.74 16 19 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 20 C 0.01 0.71 5.30 84.66 0.45 1.16 16 21 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 22 Si 0.98 42.91 29.54 68.60 2.03 44.94 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 26 C -0.08 -1.85 9.69 22.25 0.22 -1.64 16 27 C -0.13 -2.90 8.28 22.39 0.19 -2.71 16 28 N -0.34 -10.27 12.34 -47.33 -0.58 -10.86 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.10 0.84 7.74 -2.38 -0.02 0.82 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.90 6.88 -2.38 -0.02 0.88 16 36 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 38 H 0.14 2.76 8.08 -2.39 -0.02 2.74 16 39 H 0.15 2.64 8.08 -2.38 -0.02 2.62 16 40 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.08 4.36 6.07 -2.38 -0.01 4.34 16 43 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.15 2.64 6.08 -2.91 -0.02 2.62 16 Total: -1.00 -78.15 382.38 7.18 -70.97 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.99 Total: 18.66 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 5.33 Total: -17.17 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.00 Total: -73.77 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.17 Total: -43.62 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -78.15 7.18 -70.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.558 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds