Wall clock time and date at job start Tue Mar 31 2020 15:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39922 * 125.87891 * 2 1 4 4 C 1.35315 * 107.93340 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.14713 * 179.97438 * 4 3 2 6 6 N 1.35231 * 107.71347 * 359.97438 * 4 3 2 7 7 C 1.40180 * 126.05399 * 179.97438 * 6 4 3 8 8 C 1.38838 * 120.06573 * 145.00320 * 7 6 4 9 9 C 1.38116 * 119.93305 * 180.02562 * 8 7 6 10 10 C 1.38282 * 120.06769 * 359.97438 * 9 8 7 11 11 C 1.50695 * 119.93121 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47178 * 90.00282 * 11 10 9 13 13 O 1.20823 * 120.00046 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99800 * 179.97438 * 12 11 10 15 15 C 1.45202 * 116.99647 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.47201 * 30.00482 * 15 14 12 17 17 C 1.53000 * 109.47304 * 270.00311 * 15 14 12 18 18 C 1.50702 * 109.46885 * 150.00194 * 15 14 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 15 14 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 15 14 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 15 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 15 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.38272 * 120.13421 * 0.28022 * 10 9 8 27 27 C 1.38121 * 120.06381 * 359.44691 * 26 10 9 28 28 N 1.30871 * 125.88119 * 180.34231 * 2 1 3 29 29 H 1.09003 * 109.47065 * 89.99678 * 1 2 3 30 30 H 1.09003 * 109.47445 * 210.00323 * 1 2 3 31 31 H 1.09007 * 109.47593 * 330.00508 * 1 2 3 32 32 H 1.07999 * 126.03705 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47089 * 270.02600 * 5 4 3 34 34 H 1.09005 * 109.47009 * 30.02741 * 5 4 3 35 35 H 1.09004 * 109.47369 * 150.02068 * 5 4 3 36 36 H 1.07997 * 120.03230 * 359.97438 * 8 7 6 37 37 H 1.08004 * 119.96661 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.47617 * 330.00330 * 11 10 9 39 39 H 1.09001 * 109.46814 * 210.00131 * 11 10 9 40 40 H 1.08994 * 109.47175 * 60.00232 * 17 15 14 41 41 H 1.09001 * 109.47192 * 180.02562 * 17 15 14 42 42 H 1.09004 * 109.47084 * 299.99660 * 17 15 14 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.97227 * 179.70348 * 26 10 9 45 45 H 1.08004 * 120.03514 * 180.27041 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3270 1.1337 0.0000 4 6 3.6143 0.7168 -0.0006 5 6 4.8349 1.6006 -0.0013 6 7 3.6088 -0.6355 -0.0004 7 6 4.7388 -1.4651 -0.0013 8 6 4.7176 -2.6701 0.6881 9 6 5.8326 -3.4851 0.6857 10 6 6.9692 -3.1023 -0.0027 11 6 8.1838 -3.9942 -0.0036 12 6 8.1054 -4.9485 -1.1673 13 8 7.1599 -4.9088 -1.9185 14 8 9.0860 -5.8426 -1.3692 15 6 8.9438 -6.7306 -2.5093 16 1 8.3828 -6.2254 -3.2956 17 6 8.1961 -7.9948 -2.0810 18 6 10.3085 -7.1053 -3.0274 19 1 11.1941 -6.7154 -2.5475 20 6 10.4266 -7.9508 -4.1101 21 7 9.3483 -8.4258 -4.6942 22 14 12.1183 -8.4213 -4.7474 23 1 12.5850 -9.6485 -4.0535 24 1 12.0434 -8.6769 -6.2083 25 1 13.0714 -7.3127 -4.4871 26 6 6.9951 -1.9004 -0.6858 27 6 5.8813 -1.0837 -0.6918 28 7 2.2740 -1.0603 -0.0063 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8901 0.5138 32 1 1.9917 2.1604 0.0004 33 1 5.1284 1.8139 -1.0292 34 1 4.6076 2.5345 0.5129 35 1 5.6516 1.0928 0.5119 36 1 3.8304 -2.9693 1.2262 37 1 5.8169 -4.4224 1.2222 38 1 8.2205 -4.5593 0.9278 39 1 9.0825 -3.3840 -0.0940 40 1 7.2091 -7.7238 -1.7064 41 1 8.0898 -8.6616 -2.9368 42 1 8.7571 -8.5000 -1.2948 43 1 9.4314 -9.0203 -5.4561 44 1 7.8858 -1.6018 -1.2186 45 1 5.9006 -0.1470 -1.2292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:51 Heat of formation + Delta-G solvation = 6.002356 kcal Electronic energy + Delta-G solvation = -26576.223968 eV Core-core repulsion = 22753.223957 eV Total energy + Delta-G solvation = -3823.000011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81351 -39.92317 -38.90072 -35.83284 -34.62395 -33.28190 -32.82935 -31.72419 -31.00808 -29.75297 -28.91181 -27.36055 -26.41458 -25.32411 -23.14059 -22.70359 -21.33549 -20.40746 -19.78795 -19.55198 -17.72229 -16.96985 -16.69573 -16.12561 -15.73142 -15.43393 -15.19196 -14.82959 -14.71721 -14.34761 -14.01219 -13.89220 -13.74744 -13.49344 -13.32407 -13.11756 -12.92803 -12.76101 -12.47317 -12.35984 -12.20805 -12.02338 -11.71238 -11.61138 -11.26323 -11.15727 -11.06937 -10.83810 -10.72940 -10.40157 -10.29228 -9.95830 -9.63039 -9.53492 -9.12927 -9.04030 -8.92043 -8.50659 -8.20151 -6.19647 -4.26823 0.72418 1.21821 1.84537 2.21684 2.49840 2.98267 3.23402 3.28301 3.31587 3.40170 3.89929 4.27780 4.32810 4.35023 4.60672 4.62237 4.73486 4.76709 5.03512 5.10417 5.13115 5.14842 5.20661 5.30828 5.34487 5.36840 5.46475 5.50149 5.56024 5.60024 5.66503 5.78660 5.84708 5.89804 6.09052 6.15828 6.43075 6.47612 6.58548 6.64059 6.87505 6.90562 7.05966 7.16447 7.51009 7.58775 7.71807 7.93300 8.12963 8.62434 8.87059 9.38643 10.87687 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024444 B = 0.002122 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.181171 B =13192.326524 C =13473.750022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.075 3.925 3 C -0.269 4.269 4 C 0.087 3.913 5 C -0.098 4.098 6 N -0.319 5.319 7 C 0.145 3.855 8 C -0.107 4.107 9 C -0.084 4.084 10 C -0.063 4.063 11 C -0.080 4.080 12 C 0.451 3.549 13 O -0.513 6.513 14 O -0.357 6.357 15 C 0.215 3.785 16 H 0.046 0.954 17 C -0.155 4.155 18 C -0.521 4.521 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.912 3.088 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.082 4.082 27 C -0.129 4.129 28 N -0.288 5.288 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.016 0.984 41 H 0.099 0.901 42 H 0.036 0.964 43 H 0.266 0.734 44 H 0.134 0.866 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 19.799 12.620 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C -0.297 4.297 4 C -0.037 4.037 5 C -0.156 4.156 6 N -0.095 5.095 7 C 0.054 3.946 8 C -0.127 4.127 9 C -0.103 4.103 10 C -0.063 4.063 11 C -0.118 4.118 12 C 0.293 3.707 13 O -0.403 6.403 14 O -0.274 6.274 15 C 0.163 3.837 16 H 0.064 0.936 17 C -0.213 4.213 18 C -0.559 4.559 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.526 5.526 22 Si 0.739 3.261 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.101 4.101 27 C -0.149 4.149 28 N -0.108 5.108 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.035 0.965 41 H 0.118 0.882 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.784 18.328 12.202 24.518 hybrid contribution 0.632 0.427 -0.592 0.965 sum -10.152 18.755 11.611 24.282 Atomic orbital electron populations 1.20188 0.86376 1.03345 1.03124 1.22464 0.97126 0.90752 0.98857 1.21138 0.90739 0.99856 1.18011 1.21229 0.97634 0.83966 1.00878 1.20642 0.93292 0.98123 1.03546 1.45727 1.04209 1.03492 1.56032 1.17424 0.84543 0.92406 1.00231 1.20886 0.99166 0.93309 0.99310 1.20936 0.91643 0.98971 0.98702 1.19484 0.95015 0.94536 0.97308 1.20324 0.97651 0.96046 0.97756 1.23129 0.81325 0.80762 0.85480 1.90639 1.33406 1.69938 1.46271 1.86477 1.45218 1.44307 1.51374 1.20634 0.97678 0.84681 0.80690 0.93599 1.22161 0.96225 1.00493 1.02380 1.21027 0.91348 1.29411 1.14119 0.91301 1.24907 0.97788 0.95437 0.95960 1.69904 1.27941 1.32589 1.22215 0.86263 0.82974 0.78933 0.77892 1.20353 1.20980 1.19622 1.20870 0.98145 0.93433 0.97630 1.20971 0.92520 1.01559 0.99856 1.77506 0.85447 1.22469 1.25395 0.90378 0.90810 0.90338 0.83232 0.89842 0.89513 0.90402 0.85008 0.84931 0.87076 0.86986 0.96539 0.88241 0.94446 0.92385 0.84767 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.44 36.00 0.38 -0.17 16 2 C 0.07 0.86 7.22 -82.38 -0.59 0.27 16 3 C -0.27 -2.75 10.65 -39.99 -0.43 -3.18 16 4 C 0.09 0.95 6.76 -82.14 -0.56 0.40 16 5 C -0.10 -0.68 8.60 36.01 0.31 -0.37 16 6 N -0.32 -4.31 3.73 -6.98 -0.03 -4.34 16 7 C 0.14 1.96 6.28 -83.59 -0.52 1.43 16 8 C -0.11 -1.43 9.77 -39.40 -0.38 -1.82 16 9 C -0.08 -1.09 9.69 -39.61 -0.38 -1.48 16 10 C -0.06 -0.84 4.38 -104.60 -0.46 -1.30 16 11 C -0.08 -1.08 5.94 -29.04 -0.17 -1.25 16 12 C 0.45 9.07 7.92 36.01 0.29 9.35 16 13 O -0.51 -12.05 15.25 -18.75 -0.29 -12.34 16 14 O -0.36 -8.33 9.86 -39.26 -0.39 -8.71 16 15 C 0.22 5.79 2.56 -27.88 -0.07 5.72 16 16 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 17 C -0.15 -3.95 9.32 37.16 0.35 -3.61 16 18 C -0.52 -14.59 8.90 -34.44 -0.31 -14.90 16 19 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 21 N -0.89 -25.38 11.31 55.43 0.63 -24.75 16 22 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.08 -1.01 9.69 -39.61 -0.38 -1.40 16 27 C -0.13 -1.54 8.28 -39.40 -0.33 -1.87 16 28 N -0.29 -4.17 12.34 33.68 0.42 -3.75 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.08 0.49 7.74 -51.93 -0.40 0.09 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.54 6.89 -51.93 -0.36 0.19 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.11 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 2.72 6.06 -51.93 -0.31 2.40 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 45 H 0.13 1.29 6.09 -52.48 -0.32 0.97 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -34.50 382.37 -8.66 -43.15 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.38 Total: 1.54 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -3.36 Total: -12.57 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 1.02 Total: -32.84 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.67 Total: -21.05 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.50 -8.66 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.156 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds