Wall clock time and date at job start Tue Mar 31 2020 15:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39922 * 125.87891 * 2 1 4 4 C 1.35315 * 107.93340 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.14713 * 179.97438 * 4 3 2 6 6 N 1.35231 * 107.71347 * 359.97438 * 4 3 2 7 7 C 1.40180 * 126.05399 * 179.97438 * 6 4 3 8 8 C 1.38838 * 120.06573 * 145.00320 * 7 6 4 9 9 C 1.38116 * 119.93305 * 180.02562 * 8 7 6 10 10 C 1.38282 * 120.06769 * 359.97438 * 9 8 7 11 11 C 1.50695 * 119.93121 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47178 * 90.00282 * 11 10 9 13 13 O 1.20823 * 120.00046 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99800 * 179.97438 * 12 11 10 15 15 C 1.45202 * 116.99647 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.47201 * 30.00482 * 15 14 12 17 17 C 1.53000 * 109.47304 * 270.00311 * 15 14 12 18 18 C 1.50702 * 109.46885 * 150.00194 * 15 14 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 15 14 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 15 14 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 15 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 15 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.38272 * 120.13421 * 0.28022 * 10 9 8 27 27 C 1.38121 * 120.06381 * 359.44691 * 26 10 9 28 28 N 1.30871 * 125.88119 * 180.34231 * 2 1 3 29 29 H 1.09003 * 109.47065 * 89.99678 * 1 2 3 30 30 H 1.09003 * 109.47445 * 210.00323 * 1 2 3 31 31 H 1.09007 * 109.47593 * 330.00508 * 1 2 3 32 32 H 1.07999 * 126.03705 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47089 * 270.02600 * 5 4 3 34 34 H 1.09005 * 109.47009 * 30.02741 * 5 4 3 35 35 H 1.09004 * 109.47369 * 150.02068 * 5 4 3 36 36 H 1.07997 * 120.03230 * 359.97438 * 8 7 6 37 37 H 1.08004 * 119.96661 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.47617 * 330.00330 * 11 10 9 39 39 H 1.09001 * 109.46814 * 210.00131 * 11 10 9 40 40 H 1.08994 * 109.47175 * 60.00232 * 17 15 14 41 41 H 1.09001 * 109.47192 * 180.02562 * 17 15 14 42 42 H 1.09004 * 109.47084 * 299.99660 * 17 15 14 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.97227 * 179.70348 * 26 10 9 45 45 H 1.08004 * 120.03514 * 180.27041 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3270 1.1337 0.0000 4 6 3.6143 0.7168 -0.0006 5 6 4.8349 1.6006 -0.0013 6 7 3.6088 -0.6355 -0.0004 7 6 4.7388 -1.4651 -0.0013 8 6 4.7176 -2.6701 0.6881 9 6 5.8326 -3.4851 0.6857 10 6 6.9692 -3.1023 -0.0027 11 6 8.1838 -3.9942 -0.0036 12 6 8.1054 -4.9485 -1.1673 13 8 7.1599 -4.9088 -1.9185 14 8 9.0860 -5.8426 -1.3692 15 6 8.9438 -6.7306 -2.5093 16 1 8.3828 -6.2254 -3.2956 17 6 8.1961 -7.9948 -2.0810 18 6 10.3085 -7.1053 -3.0274 19 1 11.1941 -6.7154 -2.5475 20 6 10.4266 -7.9508 -4.1101 21 7 9.3483 -8.4258 -4.6942 22 14 12.1183 -8.4213 -4.7474 23 1 12.5850 -9.6485 -4.0535 24 1 12.0434 -8.6769 -6.2083 25 1 13.0714 -7.3127 -4.4871 26 6 6.9951 -1.9004 -0.6858 27 6 5.8813 -1.0837 -0.6918 28 7 2.2740 -1.0603 -0.0063 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8901 0.5138 32 1 1.9917 2.1604 0.0004 33 1 5.1284 1.8139 -1.0292 34 1 4.6076 2.5345 0.5129 35 1 5.6516 1.0928 0.5119 36 1 3.8304 -2.9693 1.2262 37 1 5.8169 -4.4224 1.2222 38 1 8.2205 -4.5593 0.9278 39 1 9.0825 -3.3840 -0.0940 40 1 7.2091 -7.7238 -1.7064 41 1 8.0898 -8.6616 -2.9368 42 1 8.7571 -8.5000 -1.2948 43 1 9.4314 -9.0203 -5.4561 44 1 7.8858 -1.6018 -1.2186 45 1 5.9006 -0.1470 -1.2292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:50 Heat of formation + Delta-G solvation = -12.309216 kcal Electronic energy + Delta-G solvation = -26577.018018 eV Core-core repulsion = 22753.223957 eV Total energy + Delta-G solvation = -3823.794061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66238 -41.41523 -40.10128 -37.60218 -35.60027 -35.32377 -33.67149 -32.68624 -31.96308 -31.62018 -29.89571 -28.05995 -27.52508 -27.35430 -24.20102 -23.99570 -22.80023 -21.35331 -21.17686 -20.60547 -18.86088 -18.57192 -18.48645 -17.26966 -17.24241 -16.70690 -16.64815 -16.07198 -15.92889 -15.56640 -14.88159 -14.78536 -14.69159 -14.59559 -14.29603 -14.13756 -14.03709 -13.94278 -13.70357 -13.37954 -13.32882 -13.16352 -13.01652 -12.91183 -12.87953 -12.79343 -12.53467 -12.40309 -12.16169 -12.12413 -11.58236 -11.56071 -11.38891 -10.99188 -10.78685 -10.59911 -10.09017 -9.89301 -9.13492 -8.28880 -6.45952 -0.23954 0.25274 0.95926 1.36561 1.38591 1.42438 1.44381 1.55660 1.71125 2.04563 2.39809 2.72112 3.01895 3.48881 3.55704 3.62687 3.77025 3.82670 4.01863 4.09289 4.23762 4.26242 4.43525 4.49380 4.53344 4.53944 4.63345 4.64361 4.71257 4.76234 4.76985 4.81153 4.83428 4.91853 4.99020 5.02664 5.10852 5.13431 5.18726 5.30570 5.44962 5.48739 5.61377 5.64415 5.74508 5.93286 6.11485 6.19106 6.60552 6.65763 7.00091 7.26577 8.78691 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024444 B = 0.002122 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.181171 B =13192.326524 C =13473.750022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.068 3.932 3 C -0.275 4.275 4 C 0.080 3.920 5 C -0.097 4.097 6 N -0.337 5.337 7 C 0.135 3.865 8 C -0.124 4.124 9 C -0.088 4.088 10 C -0.080 4.080 11 C -0.064 4.064 12 C 0.445 3.555 13 O -0.552 6.552 14 O -0.362 6.362 15 C 0.218 3.782 16 H 0.004 0.996 17 C -0.143 4.143 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.985 3.015 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.263 1.263 26 C -0.084 4.084 27 C -0.129 4.129 28 N -0.343 5.343 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.021 0.979 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.270 0.730 44 H 0.154 0.846 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 21.689 13.301 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 C -0.303 4.303 4 C -0.044 4.044 5 C -0.155 4.155 6 N -0.114 5.114 7 C 0.044 3.956 8 C -0.144 4.144 9 C -0.107 4.107 10 C -0.081 4.081 11 C -0.101 4.101 12 C 0.290 3.710 13 O -0.444 6.444 14 O -0.279 6.279 15 C 0.164 3.836 16 H 0.022 0.978 17 C -0.200 4.200 18 C -0.583 4.583 19 H 0.089 0.911 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.808 3.192 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.187 1.187 26 C -0.102 4.102 27 C -0.149 4.149 28 N -0.163 5.163 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.197 0.803 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.040 0.960 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.172 0.828 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.563 20.242 12.911 25.843 hybrid contribution 0.099 -0.047 -0.785 0.792 sum -9.463 20.194 12.127 25.386 Atomic orbital electron populations 1.20338 0.84057 1.04485 1.04000 1.23181 0.98727 0.90707 0.97198 1.21580 0.90356 1.00887 1.17446 1.21988 0.99432 0.83349 0.99646 1.20795 0.91638 0.98270 1.04747 1.45865 1.03868 1.04466 1.57156 1.17705 0.85219 0.92573 1.00152 1.20951 0.99296 0.94032 1.00118 1.21119 0.91496 0.99292 0.98753 1.19573 0.95081 0.95130 0.98299 1.20446 0.99117 0.95001 0.95555 1.24466 0.79728 0.80297 0.86480 1.90625 1.34702 1.70846 1.48190 1.86468 1.46673 1.44866 1.49889 1.20295 0.97020 0.85199 0.81037 0.97769 1.21983 0.96572 0.99761 1.01719 1.21319 0.91732 1.30232 1.15044 0.91110 1.25886 1.02013 0.94963 0.95836 1.70035 1.30294 1.32844 1.22533 0.85154 0.77853 0.78988 0.77253 1.19234 1.20525 1.18666 1.21182 0.98928 0.93093 0.96996 1.21193 0.91861 1.02346 0.99494 1.77445 0.86436 1.24519 1.27937 0.89494 0.91200 0.87654 0.80256 0.88450 0.87101 0.90457 0.85618 0.83803 0.84070 0.83755 0.95981 0.90285 0.93379 0.92080 0.82800 0.82998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.44 71.23 0.74 -0.25 16 2 C 0.07 1.55 7.22 43.11 0.31 1.86 16 3 C -0.27 -5.20 10.65 22.00 0.23 -4.97 16 4 C 0.08 1.64 6.76 41.36 0.28 1.92 16 5 C -0.10 -1.12 8.60 71.24 0.61 -0.51 16 6 N -0.34 -9.17 3.73 -176.00 -0.66 -9.83 16 7 C 0.13 3.66 6.28 38.09 0.24 3.90 16 8 C -0.12 -3.43 9.77 22.38 0.22 -3.21 16 9 C -0.09 -2.28 9.69 22.25 0.22 -2.07 16 10 C -0.08 -2.05 4.38 -19.85 -0.09 -2.14 16 11 C -0.06 -1.61 5.94 29.10 0.17 -1.43 16 12 C 0.45 17.81 7.92 71.24 0.56 18.37 16 13 O -0.55 -26.53 15.25 21.97 0.34 -26.20 16 14 O -0.36 -16.91 9.86 -51.41 -0.51 -17.42 16 15 C 0.22 11.99 2.56 29.85 0.08 12.06 16 16 H 0.00 0.28 7.16 -2.38 -0.02 0.26 16 17 C -0.14 -7.43 9.32 71.98 0.67 -6.76 16 18 C -0.55 -30.80 8.90 25.60 0.23 -30.58 16 19 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 20 C 0.01 0.69 5.30 84.66 0.45 1.13 16 21 N -0.92 -53.28 11.31 21.45 0.24 -53.04 16 22 Si 0.98 42.68 29.54 68.60 2.03 44.71 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 26 C -0.08 -1.94 9.69 22.25 0.22 -1.73 16 27 C -0.13 -2.97 8.28 22.39 0.19 -2.78 16 28 N -0.34 -10.19 12.34 -47.34 -0.58 -10.78 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.10 0.88 7.74 -2.39 -0.02 0.86 16 34 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.08 0.93 6.89 -2.39 -0.02 0.91 16 36 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.14 2.71 8.08 -2.39 -0.02 2.69 16 39 H 0.14 2.71 8.08 -2.39 -0.02 2.69 16 40 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 4.44 6.06 -2.39 -0.01 4.43 16 42 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 44 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.15 2.72 6.09 -2.91 -0.02 2.70 16 Total: -1.00 -77.78 382.37 7.18 -70.60 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.99 Total: 19.13 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 5.33 Total: -17.18 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.00 Total: -73.64 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.17 Total: -43.61 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -77.78 7.18 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.290 kcal (2) G-P(sol) polarization free energy of solvation -77.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds