Wall clock time and date at job start Tue Mar 31 2020 15:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34512 * 125.79282 * 2 1 4 4 C 1.41377 * 106.84414 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83957 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.78844 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.47531 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47335 * 240.00209 * 6 5 4 9 9 C 1.50703 * 109.47104 * 120.00146 * 6 5 4 10 10 O 1.21275 * 120.00059 * 19.58602 * 9 6 5 11 11 N 1.34781 * 120.00166 * 199.30881 * 9 6 5 12 12 C 1.46499 * 119.99894 * 355.04854 * 11 9 6 13 13 C 1.50700 * 109.47337 * 85.97440 * 12 11 9 14 14 H 1.08002 * 119.99621 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00451 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00196 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47217 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47138 * 120.00261 * 17 15 13 20 20 H 1.48496 * 109.47574 * 240.00205 * 17 15 13 21 21 C 1.46493 * 120.00161 * 175.04583 * 11 9 6 22 22 C 1.50709 * 109.46999 * 90.00061 * 21 11 9 23 23 C 1.38670 * 120.42024 * 269.72594 * 22 21 11 24 24 C 1.38626 * 118.42256 * 179.78528 * 23 22 21 25 25 C 1.38230 * 119.15685 * 0.50751 * 24 23 22 26 26 N 1.31854 * 120.76374 * 359.73049 * 25 24 23 27 27 C 1.31883 * 121.72686 * 359.97438 * 26 25 24 28 28 O 1.34296 * 108.42106 * 0.26363 * 5 4 3 29 29 H 1.09003 * 109.47061 * 89.99440 * 1 2 3 30 30 H 1.09001 * 109.47313 * 209.99605 * 1 2 3 31 31 H 1.08998 * 109.47403 * 329.99874 * 1 2 3 32 32 H 1.08005 * 126.57824 * 0.02562 * 3 2 1 33 33 H 1.08001 * 126.58219 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47503 * 67.75209 * 8 6 5 35 35 H 1.08997 * 109.47570 * 187.75376 * 8 6 5 36 36 H 1.09004 * 109.47417 * 307.75651 * 8 6 5 37 37 H 1.08994 * 109.47582 * 205.97745 * 12 11 9 38 38 H 1.09002 * 109.47413 * 325.98015 * 12 11 9 39 39 H 0.97002 * 120.00188 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.47470 * 210.00103 * 21 11 9 41 41 H 1.09000 * 109.47573 * 330.00820 * 21 11 9 42 42 H 1.08006 * 120.79044 * 0.02562 * 23 22 21 43 43 H 1.07993 * 120.42077 * 180.21642 * 24 23 22 44 44 H 1.07998 * 119.61458 * 179.75332 * 25 24 23 45 45 H 1.08007 * 119.61708 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5813 -0.7122 -0.0004 6 6 4.7705 -1.6379 -0.0003 7 1 5.6885 -1.0502 0.0000 8 6 4.7299 -2.5205 -1.2493 9 6 4.7305 -2.5069 1.2304 10 8 3.6897 -2.6542 1.8351 11 7 5.8503 -3.1248 1.6557 12 6 7.0795 -3.0404 0.8631 13 6 7.8298 -1.7866 1.2316 14 1 7.4311 -1.1194 1.9816 15 6 9.0257 -1.4915 0.6123 16 7 9.5115 -2.3042 -0.3006 17 14 9.9561 0.0624 1.0697 18 1 9.2033 0.8003 2.1155 19 1 11.2991 -0.2998 1.5898 20 1 10.1059 0.9216 -0.1322 21 6 5.8383 -3.8807 2.9104 22 6 5.4570 -5.3118 2.6311 23 6 4.1270 -5.7029 2.6623 24 6 3.8226 -7.0286 2.3945 25 6 4.8487 -7.9125 2.1179 26 7 6.1030 -7.5062 2.1018 27 6 6.4288 -6.2517 2.3460 28 8 2.2924 -1.0894 -0.0055 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9666 2.1204 0.0004 33 1 4.5212 1.2432 -0.0004 34 1 4.8969 -1.9060 -2.1341 35 1 5.5083 -3.2806 -1.1827 36 1 3.7555 -3.0037 -1.3213 37 1 7.7037 -3.9104 1.0668 38 1 6.8273 -3.0145 -0.1970 39 1 10.3531 -2.0968 -0.7361 40 1 6.8296 -3.8504 3.3624 41 1 5.1136 -3.4386 3.5941 42 1 3.3463 -4.9908 2.8859 43 1 2.7973 -7.3675 2.4066 44 1 4.6204 -8.9478 1.9123 45 1 7.4673 -5.9559 2.3234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742589754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:34 Heat of formation + Delta-G solvation = 8.125367 kcal Electronic energy + Delta-G solvation = -28317.650601 eV Core-core repulsion = 24494.742650 eV Total energy + Delta-G solvation = -3822.907951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25874 -40.08078 -39.03341 -35.29342 -34.06773 -32.91268 -32.82182 -32.10487 -31.36132 -30.67870 -27.60524 -26.23548 -26.13380 -23.73966 -23.33054 -22.62463 -21.76910 -21.37836 -19.93619 -18.53241 -16.94755 -16.83537 -16.32471 -16.30846 -15.86833 -15.63100 -15.24302 -15.09066 -14.47705 -14.24459 -13.96486 -13.49736 -13.38757 -13.09618 -12.99862 -12.96931 -12.79191 -12.70142 -12.45162 -12.39377 -11.95059 -11.87057 -11.70984 -11.63649 -11.23747 -11.14634 -11.06027 -10.92699 -10.68844 -10.24034 -9.83972 -9.59196 -9.52983 -9.23487 -9.16194 -8.75621 -8.60725 -7.95299 -7.83320 -6.26221 -4.34668 1.30507 1.53670 2.04939 2.90524 3.16149 3.17303 3.26960 3.30225 3.36623 3.77016 4.19101 4.28017 4.67077 4.84663 5.02141 5.06052 5.11417 5.15778 5.18398 5.28266 5.33503 5.35537 5.43711 5.46423 5.55234 5.62593 5.70597 5.79245 5.88857 6.01830 6.06085 6.13328 6.14146 6.21747 6.33025 6.36828 6.40586 6.50280 6.59996 6.66701 6.85712 6.94143 7.13852 7.40909 7.57539 7.68101 7.95765 8.17424 8.19666 8.70263 8.88891 9.34099 10.80080 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.006991 B = 0.005997 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4003.907347 B = 4667.954891 C = 7999.670826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.028 4.028 3 C -0.213 4.213 4 C -0.213 4.213 5 C 0.027 3.973 6 C -0.031 4.031 7 H 0.142 0.858 8 C -0.140 4.140 9 C 0.525 3.475 10 O -0.560 6.560 11 N -0.590 5.590 12 C 0.229 3.771 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.162 3.838 22 C -0.145 4.145 23 C -0.054 4.054 24 C -0.182 4.182 25 C 0.089 3.911 26 N -0.490 5.490 27 C 0.114 3.886 28 O -0.155 6.155 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.266 0.734 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.149 0.851 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.153 -1.206 1.012 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.233 4.233 4 C -0.232 4.232 5 C -0.024 4.024 6 C -0.052 4.052 7 H 0.160 0.840 8 C -0.198 4.198 9 C 0.313 3.687 10 O -0.439 6.439 11 N -0.319 5.319 12 C 0.109 3.891 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 C 0.038 3.962 22 C -0.148 4.148 23 C -0.080 4.080 24 C -0.201 4.201 25 C -0.068 4.068 26 N -0.198 5.198 27 C -0.043 4.043 28 O -0.051 6.051 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.945 -2.218 1.011 12.191 hybrid contribution 0.203 1.720 0.314 1.760 sum -11.742 -0.498 1.325 11.827 Atomic orbital electron populations 1.20211 0.85735 1.03654 1.02923 1.22332 0.93880 0.84628 1.06983 1.21446 0.92781 0.98943 1.10087 1.21543 0.98151 0.93757 1.09796 1.21868 0.82559 0.93692 1.04249 1.20017 0.94391 0.95680 0.95113 0.84002 1.21797 1.02641 0.99842 0.95500 1.20209 0.83239 0.79743 0.85511 1.90599 1.30630 1.64193 1.58517 1.48207 1.12283 1.48678 1.22779 1.19670 0.80062 0.97985 0.91357 1.21520 1.06033 1.07302 1.23348 0.91863 1.24927 0.97020 0.96948 0.94643 1.69926 1.20408 1.36622 1.25444 0.86500 0.79845 0.82970 0.78581 1.19589 1.20793 1.20748 1.20147 1.02801 0.85950 0.87318 1.21426 0.94308 0.98025 1.01075 1.21675 0.96533 0.95688 0.94150 1.22103 1.00658 0.94593 1.02793 1.22687 0.88244 0.99795 0.96061 1.67698 1.20898 1.17927 1.13284 1.22794 1.00085 0.87888 0.93551 1.84001 1.16191 1.34351 1.70530 0.90610 0.90784 0.89821 0.84020 0.83496 0.91339 0.90283 0.92531 0.94317 0.93633 0.92428 0.89022 0.89970 0.84440 0.85316 0.83322 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.42 36.00 0.37 -0.34 16 2 C -0.03 -0.42 7.32 -35.63 -0.26 -0.68 16 3 C -0.21 -3.22 10.81 -39.71 -0.43 -3.65 16 4 C -0.21 -3.63 10.78 -39.70 -0.43 -4.05 16 5 C 0.03 0.51 5.39 -35.63 -0.19 0.32 16 6 C -0.03 -0.59 2.32 -92.93 -0.22 -0.80 16 7 H 0.14 2.81 6.57 -51.93 -0.34 2.47 16 8 C -0.14 -2.39 8.84 37.16 0.33 -2.06 16 9 C 0.53 10.69 6.79 -10.98 -0.07 10.62 16 10 O -0.56 -12.22 14.71 -6.68 -0.10 -12.31 16 11 N -0.59 -11.69 2.45 -176.44 -0.43 -12.12 16 12 C 0.23 5.03 4.80 -5.19 -0.02 5.01 16 13 C -0.54 -13.13 8.29 -34.44 -0.29 -13.41 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.17 13.29 55.43 0.74 -22.43 16 17 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 C 0.16 2.83 5.50 -5.19 -0.03 2.80 16 22 C -0.15 -2.39 5.48 -104.48 -0.57 -2.96 16 23 C -0.05 -0.84 9.74 -39.28 -0.38 -1.22 16 24 C -0.18 -2.44 10.11 -39.44 -0.40 -2.84 16 25 C 0.09 1.24 11.18 -17.54 -0.20 1.04 16 26 N -0.49 -8.01 10.36 -13.25 -0.14 -8.14 16 27 C 0.11 1.88 10.86 -17.55 -0.19 1.69 16 28 O -0.16 -2.87 10.09 -6.53 -0.07 -2.94 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.40 5.92 -51.93 -0.31 1.09 16 36 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 37 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.05 1.03 4.77 -51.93 -0.25 0.79 16 39 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 40 H 0.09 1.53 8.02 -51.93 -0.42 1.11 16 41 H 0.08 1.43 7.45 -51.93 -0.39 1.04 16 42 H 0.14 2.19 7.50 -52.48 -0.39 1.80 16 43 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.16 2.50 8.06 -52.48 -0.42 2.07 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -29.50 381.24 -8.63 -38.13 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.28 Total: 8.42 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -3.07 Total: -8.95 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.17 Total: -42.70 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.16 Total: -15.25 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.50 -8.63 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742589754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.255 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds