Wall clock time and date at job start Tue Mar 31 2020 15:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34512 * 125.79282 * 2 1 4 4 C 1.41377 * 106.84414 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83957 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.78844 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.47531 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47335 * 240.00209 * 6 5 4 9 9 C 1.50703 * 109.47104 * 120.00146 * 6 5 4 10 10 O 1.21275 * 120.00059 * 19.58602 * 9 6 5 11 11 N 1.34781 * 120.00166 * 199.30881 * 9 6 5 12 12 C 1.46499 * 119.99894 * 355.04854 * 11 9 6 13 13 C 1.50700 * 109.47337 * 85.97440 * 12 11 9 14 14 H 1.08002 * 119.99621 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00451 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00196 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47217 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47138 * 120.00261 * 17 15 13 20 20 H 1.48496 * 109.47574 * 240.00205 * 17 15 13 21 21 C 1.46493 * 120.00161 * 175.04583 * 11 9 6 22 22 C 1.50709 * 109.46999 * 90.00061 * 21 11 9 23 23 C 1.38670 * 120.42024 * 269.72594 * 22 21 11 24 24 C 1.38626 * 118.42256 * 179.78528 * 23 22 21 25 25 C 1.38230 * 119.15685 * 0.50751 * 24 23 22 26 26 N 1.31854 * 120.76374 * 359.73049 * 25 24 23 27 27 C 1.31883 * 121.72686 * 359.97438 * 26 25 24 28 28 O 1.34296 * 108.42106 * 0.26363 * 5 4 3 29 29 H 1.09003 * 109.47061 * 89.99440 * 1 2 3 30 30 H 1.09001 * 109.47313 * 209.99605 * 1 2 3 31 31 H 1.08998 * 109.47403 * 329.99874 * 1 2 3 32 32 H 1.08005 * 126.57824 * 0.02562 * 3 2 1 33 33 H 1.08001 * 126.58219 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47503 * 67.75209 * 8 6 5 35 35 H 1.08997 * 109.47570 * 187.75376 * 8 6 5 36 36 H 1.09004 * 109.47417 * 307.75651 * 8 6 5 37 37 H 1.08994 * 109.47582 * 205.97745 * 12 11 9 38 38 H 1.09002 * 109.47413 * 325.98015 * 12 11 9 39 39 H 0.97002 * 120.00188 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.47470 * 210.00103 * 21 11 9 41 41 H 1.09000 * 109.47573 * 330.00820 * 21 11 9 42 42 H 1.08006 * 120.79044 * 0.02562 * 23 22 21 43 43 H 1.07993 * 120.42077 * 180.21642 * 24 23 22 44 44 H 1.07998 * 119.61458 * 179.75332 * 25 24 23 45 45 H 1.08007 * 119.61708 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5813 -0.7122 -0.0004 6 6 4.7705 -1.6379 -0.0003 7 1 5.6885 -1.0502 0.0000 8 6 4.7299 -2.5205 -1.2493 9 6 4.7305 -2.5069 1.2304 10 8 3.6897 -2.6542 1.8351 11 7 5.8503 -3.1248 1.6557 12 6 7.0795 -3.0404 0.8631 13 6 7.8298 -1.7866 1.2316 14 1 7.4311 -1.1194 1.9816 15 6 9.0257 -1.4915 0.6123 16 7 9.5115 -2.3042 -0.3006 17 14 9.9561 0.0624 1.0697 18 1 9.2033 0.8003 2.1155 19 1 11.2991 -0.2998 1.5898 20 1 10.1059 0.9216 -0.1322 21 6 5.8383 -3.8807 2.9104 22 6 5.4570 -5.3118 2.6311 23 6 4.1270 -5.7029 2.6623 24 6 3.8226 -7.0286 2.3945 25 6 4.8487 -7.9125 2.1179 26 7 6.1030 -7.5062 2.1018 27 6 6.4288 -6.2517 2.3460 28 8 2.2924 -1.0894 -0.0055 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9666 2.1204 0.0004 33 1 4.5212 1.2432 -0.0004 34 1 4.8969 -1.9060 -2.1341 35 1 5.5083 -3.2806 -1.1827 36 1 3.7555 -3.0037 -1.3213 37 1 7.7037 -3.9104 1.0668 38 1 6.8273 -3.0145 -0.1970 39 1 10.3531 -2.0968 -0.7361 40 1 6.8296 -3.8504 3.3624 41 1 5.1136 -3.4386 3.5941 42 1 3.3463 -4.9908 2.8859 43 1 2.7973 -7.3675 2.4066 44 1 4.6204 -8.9478 1.9123 45 1 7.4673 -5.9559 2.3234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742589754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:34 Heat of formation + Delta-G solvation = -5.879493 kcal Electronic energy + Delta-G solvation = -28318.257897 eV Core-core repulsion = 24494.742650 eV Total energy + Delta-G solvation = -3823.515247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.53397 -41.41330 -40.49726 -36.92732 -35.50421 -34.66173 -34.03181 -33.46983 -32.58728 -31.83060 -29.35307 -27.59204 -27.42195 -25.34944 -24.58532 -24.13852 -23.04886 -22.64513 -21.22801 -20.03326 -18.72386 -18.16221 -17.81731 -17.76357 -17.12547 -16.95804 -16.68832 -16.48351 -16.17583 -15.60610 -15.30288 -14.82647 -14.74910 -14.41800 -14.29470 -14.18289 -13.94984 -13.92924 -13.69163 -13.67141 -13.49681 -13.34182 -13.12329 -12.89271 -12.83754 -12.70328 -12.51820 -12.41421 -12.33288 -12.00962 -11.65928 -10.94199 -10.78589 -10.67479 -10.51346 -10.46822 -9.97604 -9.52210 -9.16530 -8.18750 -6.32683 0.11201 0.32304 0.78138 1.41634 1.46360 1.54921 1.61669 1.71694 2.04995 2.28117 2.45257 2.93720 3.12127 3.53046 3.59139 3.62711 3.86701 3.92198 4.00634 4.08505 4.09053 4.10014 4.20220 4.32704 4.45359 4.57656 4.64739 4.65153 4.71463 4.73632 4.80019 4.84329 4.86790 4.88090 4.92883 5.01199 5.14461 5.19016 5.26622 5.34815 5.38186 5.65863 5.69705 5.76714 5.79730 6.06372 6.31446 6.49403 6.80917 7.00135 7.23817 7.40365 8.86822 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.006991 B = 0.005997 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4003.907347 B = 4667.954891 C = 7999.670826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.031 4.031 3 C -0.221 4.221 4 C -0.218 4.218 5 C -0.005 4.005 6 C -0.028 4.028 7 H 0.127 0.873 8 C -0.132 4.132 9 C 0.521 3.479 10 O -0.576 6.576 11 N -0.590 5.590 12 C 0.244 3.756 13 C -0.545 4.545 14 H 0.054 0.946 15 C 0.029 3.971 16 N -0.915 5.915 17 Si 0.950 3.050 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.278 1.278 21 C 0.162 3.838 22 C -0.155 4.155 23 C -0.064 4.064 24 C -0.170 4.170 25 C 0.091 3.909 26 N -0.510 5.510 27 C 0.102 3.898 28 O -0.178 6.178 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.173 0.827 33 H 0.154 0.846 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.040 0.960 39 H 0.268 0.732 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.131 0.869 43 H 0.164 0.836 44 H 0.187 0.813 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 -0.905 0.924 13.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.239 4.239 4 C -0.237 4.237 5 C -0.055 4.055 6 C -0.048 4.048 7 H 0.145 0.855 8 C -0.189 4.189 9 C 0.310 3.690 10 O -0.457 6.457 11 N -0.319 5.319 12 C 0.124 3.876 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.172 4.172 16 N -0.554 5.554 17 Si 0.776 3.224 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.204 1.204 21 C 0.038 3.962 22 C -0.158 4.158 23 C -0.091 4.091 24 C -0.190 4.190 25 C -0.067 4.067 26 N -0.218 5.218 27 C -0.055 4.055 28 O -0.075 6.075 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.190 0.810 33 H 0.172 0.828 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.149 0.851 43 H 0.182 0.818 44 H 0.203 0.797 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.720 -1.914 0.936 13.885 hybrid contribution 0.642 1.588 0.363 1.751 sum -13.078 -0.327 1.299 13.147 Atomic orbital electron populations 1.20455 0.82317 1.04955 1.04678 1.23334 0.95813 0.83898 1.05046 1.21809 0.91677 1.00496 1.09964 1.21846 0.99609 0.93452 1.08796 1.21799 0.82698 0.94097 1.06916 1.19887 0.94416 0.95558 0.94983 0.85510 1.21724 1.02200 0.99493 0.95471 1.20514 0.82950 0.79694 0.85846 1.90571 1.31059 1.64917 1.59168 1.48180 1.11505 1.48958 1.23241 1.19340 0.80439 0.96579 0.91270 1.21655 1.06204 1.07677 1.22799 0.92741 1.25543 0.97773 0.99304 0.94612 1.70008 1.20874 1.38068 1.26419 0.85624 0.78541 0.79991 0.78255 1.19547 1.20680 1.20356 1.20202 1.02927 0.86703 0.86328 1.21257 0.95002 0.97150 1.02411 1.21744 0.95800 0.96856 0.94680 1.22452 1.02416 0.93306 1.00788 1.23332 0.87318 1.01526 0.94480 1.67719 1.22547 1.17611 1.13957 1.22733 0.99968 0.88357 0.94405 1.83976 1.16366 1.36002 1.71141 0.88500 0.90739 0.87212 0.80960 0.82843 0.89813 0.91442 0.92355 0.95668 0.94254 0.92325 0.88824 0.90130 0.85097 0.81812 0.79654 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.42 71.23 0.74 -0.48 16 2 C -0.03 -0.89 7.32 24.83 0.18 -0.71 16 3 C -0.22 -6.25 10.81 22.19 0.24 -6.01 16 4 C -0.22 -7.32 10.78 22.19 0.24 -7.08 16 5 C 0.00 -0.17 5.39 24.83 0.13 -0.04 16 6 C -0.03 -1.07 2.32 -12.29 -0.03 -1.09 16 7 H 0.13 5.23 6.57 -2.38 -0.02 5.21 16 8 C -0.13 -4.58 8.84 71.98 0.64 -3.94 16 9 C 0.52 21.82 6.79 87.66 0.60 22.41 16 10 O -0.58 -25.66 14.71 8.69 0.13 -25.53 16 11 N -0.59 -24.18 2.45 -830.52 -2.03 -26.21 16 12 C 0.24 11.12 4.80 85.63 0.41 11.53 16 13 C -0.54 -26.88 8.29 25.60 0.21 -26.67 16 14 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 15 C 0.03 1.45 5.46 84.65 0.46 1.91 16 16 N -0.91 -48.45 13.29 21.44 0.28 -48.17 16 17 Si 0.95 40.44 29.54 68.60 2.03 42.46 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 C 0.16 5.85 5.50 85.64 0.47 6.32 16 22 C -0.16 -5.20 5.48 -19.77 -0.11 -5.31 16 23 C -0.06 -1.97 9.74 22.47 0.22 -1.75 16 24 C -0.17 -4.20 10.11 22.36 0.23 -3.97 16 25 C 0.09 2.30 11.18 84.69 0.95 3.25 16 26 N -0.51 -16.31 10.36 -195.84 -2.03 -18.34 16 27 C 0.10 3.43 10.86 84.67 0.92 4.35 16 28 O -0.18 -6.55 10.09 9.25 0.09 -6.46 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.15 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.07 2.47 5.92 -2.39 -0.01 2.46 16 36 H 0.06 1.97 8.13 -2.38 -0.02 1.95 16 37 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 38 H 0.04 1.86 4.77 -2.39 -0.01 1.85 16 39 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 40 H 0.09 3.27 8.02 -2.39 -0.02 3.25 16 41 H 0.08 2.90 7.45 -2.39 -0.02 2.89 16 42 H 0.13 4.17 7.50 -2.91 -0.02 4.15 16 43 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -63.73 381.24 5.96 -57.77 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.99 Total: 31.75 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.50 Total: -7.28 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -3.78 Total: -92.72 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: 0.22 Total: -31.99 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -63.73 5.96 -57.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742589754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.890 kcal (2) G-P(sol) polarization free energy of solvation -63.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds