Wall clock time and date at job start Tue Mar 31 2020 15:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34512 * 125.78631 * 2 1 4 4 C 1.41384 * 106.83787 * 179.75534 * 3 2 1 5 5 C 1.34516 * 106.84119 * 0.36764 * 4 3 2 6 6 C 1.50692 * 125.78850 * 179.89495 * 5 4 3 7 7 H 1.08997 * 109.47313 * 359.71417 * 6 5 4 8 8 C 1.53004 * 109.47218 * 119.71860 * 6 5 4 9 9 C 1.50704 * 109.47123 * 239.71481 * 6 5 4 10 10 O 1.21278 * 120.00050 * 273.79080 * 9 6 5 11 11 N 1.34779 * 119.99890 * 93.78703 * 9 6 5 12 12 C 1.46507 * 119.99804 * 5.05054 * 11 9 6 13 13 C 1.50701 * 109.46626 * 84.42423 * 12 11 9 14 14 H 1.07995 * 120.00464 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99570 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99881 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00054 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47482 * 89.99760 * 17 15 13 19 19 H 1.48506 * 109.46860 * 209.99994 * 17 15 13 20 20 H 1.48496 * 109.46958 * 329.99369 * 17 15 13 21 21 C 1.46496 * 120.00069 * 185.05169 * 11 9 6 22 22 C 1.50703 * 109.47025 * 90.00071 * 21 11 9 23 23 C 1.38672 * 120.41892 * 269.71999 * 22 21 11 24 24 C 1.38623 * 118.42297 * 179.78161 * 23 22 21 25 25 C 1.38232 * 119.16056 * 0.51555 * 24 23 22 26 26 N 1.31861 * 120.76014 * 359.72734 * 25 24 23 27 27 C 1.31881 * 121.72631 * 359.97438 * 26 25 24 28 28 O 1.34296 * 125.78842 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47094 * 300.00288 * 1 2 3 31 31 H 1.09006 * 109.47382 * 60.00304 * 1 2 3 32 32 H 1.07998 * 126.57829 * 359.97438 * 3 2 1 33 33 H 1.07999 * 126.57693 * 180.23874 * 4 3 2 34 34 H 1.08997 * 109.47249 * 55.01800 * 8 6 5 35 35 H 1.09000 * 109.46670 * 295.01321 * 8 6 5 36 36 H 1.09003 * 109.46972 * 175.01690 * 8 6 5 37 37 H 1.08999 * 109.46469 * 204.41772 * 12 11 9 38 38 H 1.08998 * 109.47262 * 324.42234 * 12 11 9 39 39 H 0.97005 * 119.99916 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.47063 * 209.99706 * 21 11 9 41 41 H 1.08996 * 109.47203 * 330.00452 * 21 11 9 42 42 H 1.08003 * 120.79262 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.42451 * 180.22443 * 24 23 22 44 44 H 1.07993 * 119.62322 * 179.74565 * 25 24 23 45 45 H 1.07999 * 119.61920 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0058 5 6 3.5814 -0.7122 0.0007 6 6 4.7706 -1.6377 0.0018 7 1 5.6885 -1.0500 0.0022 8 6 4.7292 -2.5199 1.2512 9 6 4.7315 -2.5073 -1.2285 10 8 4.0992 -3.5421 -1.2198 11 7 5.3991 -2.1348 -2.3385 12 6 6.2517 -0.9436 -2.3153 13 6 7.6119 -1.3098 -1.7798 14 1 7.8203 -2.3278 -1.4857 15 6 8.5903 -0.3451 -1.6653 16 7 9.7772 -0.6645 -1.1975 17 14 8.2296 1.4160 -2.1733 18 1 7.6998 2.1687 -1.0081 19 1 9.4799 2.0592 -2.6513 20 1 7.2225 1.4199 -3.2646 21 6 5.2723 -2.9210 -3.5681 22 6 4.1231 -2.3914 -4.3866 23 6 2.8449 -2.9009 -4.2144 24 6 1.8176 -2.3804 -4.9859 25 6 2.1013 -1.3853 -5.9025 26 7 3.3302 -0.9283 -6.0430 27 6 4.3306 -1.3958 -5.3220 28 8 2.2924 -1.0894 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.9664 2.1204 -0.0004 33 1 4.5211 1.2434 0.0109 34 1 3.7730 -3.0412 1.2964 35 1 4.8465 -1.8982 2.1388 36 1 5.5386 -3.2487 1.2084 37 1 6.3533 -0.5499 -3.3267 38 1 5.8006 -0.1863 -1.6742 39 1 10.4654 0.0143 -1.1166 40 1 6.1942 -2.8452 -4.1445 41 1 5.0870 -3.9647 -3.3144 42 1 2.6535 -3.6820 -3.4934 43 1 0.8091 -2.7508 -4.8757 44 1 1.3074 -0.9774 -6.5104 45 1 5.3238 -0.9964 -5.4648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742589757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:38 Heat of formation + Delta-G solvation = 11.334645 kcal Electronic energy + Delta-G solvation = -28885.261869 eV Core-core repulsion = 25062.493083 eV Total energy + Delta-G solvation = -3822.768786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43039 -40.17418 -39.13974 -35.46738 -34.05840 -32.98047 -32.90784 -32.19450 -31.41455 -30.84942 -28.23143 -26.58086 -26.11766 -23.60373 -23.41444 -22.47051 -21.73580 -21.52616 -20.09283 -18.48042 -17.23164 -16.99363 -16.74185 -16.24321 -16.00691 -15.93834 -15.43067 -15.15815 -14.51510 -14.27394 -13.97321 -13.51167 -13.41332 -13.22784 -13.14833 -13.00566 -12.87781 -12.78488 -12.60317 -12.54469 -12.16555 -11.94208 -11.90007 -11.75624 -11.34899 -11.31201 -11.11794 -10.91043 -10.63391 -10.36205 -9.77780 -9.67772 -9.66189 -9.34849 -9.30533 -8.85958 -8.79304 -8.03829 -7.91660 -6.29244 -4.32522 1.20661 1.43778 1.87581 2.76061 2.95169 3.12538 3.21902 3.24234 3.33016 3.63227 4.09253 4.20234 4.56991 4.77283 4.92185 4.99731 5.03019 5.06052 5.09304 5.18720 5.22562 5.24759 5.28808 5.37194 5.47667 5.55065 5.61606 5.74198 5.80443 5.93311 5.99437 6.04493 6.08463 6.18394 6.25504 6.27182 6.31058 6.32166 6.49880 6.52408 6.59445 6.72388 6.83961 7.16963 7.33769 7.39983 7.97536 8.09120 8.28930 8.71099 8.79635 9.29403 10.82790 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008146 B = 0.006247 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.370290 B = 4480.924369 C = 5999.450949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.025 4.025 3 C -0.211 4.211 4 C -0.203 4.203 5 C 0.011 3.989 6 C -0.035 4.035 7 H 0.140 0.860 8 C -0.129 4.129 9 C 0.533 3.467 10 O -0.557 6.557 11 N -0.583 5.583 12 C 0.207 3.793 13 C -0.547 4.547 14 H 0.081 0.919 15 C 0.081 3.919 16 N -0.886 5.886 17 Si 0.864 3.136 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.262 1.262 21 C 0.159 3.841 22 C -0.146 4.146 23 C -0.055 4.055 24 C -0.179 4.179 25 C 0.091 3.909 26 N -0.489 5.489 27 C 0.112 3.888 28 O -0.164 6.164 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.029 0.971 39 H 0.268 0.732 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.150 0.850 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.781 0.941 -1.256 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 C -0.230 4.230 4 C -0.222 4.222 5 C -0.039 4.039 6 C -0.056 4.056 7 H 0.158 0.842 8 C -0.187 4.187 9 C 0.320 3.680 10 O -0.436 6.436 11 N -0.313 5.313 12 C 0.086 3.914 13 C -0.585 4.585 14 H 0.099 0.901 15 C -0.124 4.124 16 N -0.522 5.522 17 Si 0.690 3.310 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.035 3.965 22 C -0.149 4.149 23 C -0.081 4.081 24 C -0.199 4.199 25 C -0.067 4.067 26 N -0.197 5.197 27 C -0.046 4.046 28 O -0.061 6.061 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.168 0.832 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.826 0.843 -1.830 15.954 hybrid contribution 0.031 0.760 0.359 0.842 sum -15.795 1.603 -1.471 15.945 Atomic orbital electron populations 1.20241 0.85492 1.03754 1.03137 1.22373 0.93916 0.84440 1.06778 1.21485 0.92696 0.99169 1.09646 1.21624 0.98310 0.93713 1.08528 1.21902 0.82439 0.93826 1.05758 1.20056 0.94302 0.96104 0.95125 0.84235 1.21606 1.03262 0.99111 0.94689 1.20133 0.78234 0.85544 0.84069 1.90582 1.44126 1.25130 1.83776 1.47913 1.45414 1.29015 1.08927 1.19891 0.90337 0.82969 0.98192 1.21369 0.94312 0.98372 1.44414 0.90079 1.24843 0.94751 0.98568 0.94193 1.69881 1.03564 1.34383 1.44418 0.87027 0.78641 0.85359 0.79961 1.19677 1.20696 1.18667 1.20182 0.95401 0.95945 0.84988 1.21442 0.96717 0.98476 0.98313 1.21654 0.91974 0.98052 0.96426 1.22104 1.00165 0.99276 0.98313 1.22692 0.94032 0.93811 0.96130 1.67691 1.00305 1.26991 1.24753 1.22763 0.98256 0.92381 0.91151 1.84004 1.16239 1.34673 1.71147 0.90769 0.89971 0.90034 0.83753 0.83277 0.91751 0.91836 0.91169 0.94608 0.95292 0.92217 0.88791 0.89276 0.84521 0.85207 0.83238 0.82698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.42 36.01 0.38 -0.31 16 2 C -0.02 -0.36 7.32 -35.62 -0.26 -0.62 16 3 C -0.21 -3.10 10.81 -39.70 -0.43 -3.53 16 4 C -0.20 -3.39 10.62 -39.70 -0.42 -3.81 16 5 C 0.01 0.20 5.73 -35.63 -0.20 0.00 16 6 C -0.04 -0.65 2.37 -92.92 -0.22 -0.87 16 7 H 0.14 2.73 5.79 -51.93 -0.30 2.43 16 8 C -0.13 -2.14 8.74 37.16 0.32 -1.82 16 9 C 0.53 10.77 6.61 -10.98 -0.07 10.70 16 10 O -0.56 -11.92 15.81 5.56 0.09 -11.84 16 11 N -0.58 -11.59 2.45 -176.43 -0.43 -12.02 16 12 C 0.21 4.43 3.86 -5.19 -0.02 4.41 16 13 C -0.55 -13.68 9.30 -34.44 -0.32 -14.00 16 14 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 15 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.89 -24.80 13.96 55.43 0.77 -24.03 16 17 Si 0.86 19.26 27.47 -169.99 -4.67 14.59 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 21 C 0.16 2.75 5.57 -5.19 -0.03 2.72 16 22 C -0.15 -2.37 5.48 -104.48 -0.57 -2.94 16 23 C -0.05 -0.83 9.86 -39.28 -0.39 -1.22 16 24 C -0.18 -2.33 10.11 -39.44 -0.40 -2.73 16 25 C 0.09 1.21 11.18 -17.54 -0.20 1.02 16 26 N -0.49 -7.77 10.36 -13.25 -0.14 -7.91 16 27 C 0.11 1.80 10.86 -17.55 -0.19 1.61 16 28 O -0.16 -2.90 10.65 5.72 0.06 -2.84 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.76 7.09 -51.93 -0.37 0.39 16 38 H 0.03 0.62 5.75 -51.93 -0.30 0.32 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.09 1.55 8.02 -51.93 -0.42 1.13 16 41 H 0.09 1.54 7.31 -51.93 -0.38 1.16 16 42 H 0.14 2.11 7.96 -52.48 -0.42 1.69 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -30.75 383.06 -8.08 -38.83 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.42 Total: 8.84 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.12 Total: -9.39 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.20 Total: -43.96 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.15 Total: -14.68 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.67 Total: 14.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.75 -8.08 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742589757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.160 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds