Wall clock time and date at job start Tue Mar 31 2020 15:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34512 * 125.78631 * 2 1 4 4 C 1.41384 * 106.83787 * 179.75534 * 3 2 1 5 5 C 1.34516 * 106.84119 * 0.36764 * 4 3 2 6 6 C 1.50692 * 125.78850 * 179.89495 * 5 4 3 7 7 H 1.08997 * 109.47313 * 359.71417 * 6 5 4 8 8 C 1.53004 * 109.47218 * 119.71860 * 6 5 4 9 9 C 1.50704 * 109.47123 * 239.71481 * 6 5 4 10 10 O 1.21278 * 120.00050 * 273.79080 * 9 6 5 11 11 N 1.34779 * 119.99890 * 93.78703 * 9 6 5 12 12 C 1.46507 * 119.99804 * 5.05054 * 11 9 6 13 13 C 1.50701 * 109.46626 * 84.42423 * 12 11 9 14 14 H 1.07995 * 120.00464 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99570 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99881 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00054 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47482 * 89.99760 * 17 15 13 19 19 H 1.48506 * 109.46860 * 209.99994 * 17 15 13 20 20 H 1.48496 * 109.46958 * 329.99369 * 17 15 13 21 21 C 1.46496 * 120.00069 * 185.05169 * 11 9 6 22 22 C 1.50703 * 109.47025 * 90.00071 * 21 11 9 23 23 C 1.38672 * 120.41892 * 269.71999 * 22 21 11 24 24 C 1.38623 * 118.42297 * 179.78161 * 23 22 21 25 25 C 1.38232 * 119.16056 * 0.51555 * 24 23 22 26 26 N 1.31861 * 120.76014 * 359.72734 * 25 24 23 27 27 C 1.31881 * 121.72631 * 359.97438 * 26 25 24 28 28 O 1.34296 * 125.78842 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47094 * 300.00288 * 1 2 3 31 31 H 1.09006 * 109.47382 * 60.00304 * 1 2 3 32 32 H 1.07998 * 126.57829 * 359.97438 * 3 2 1 33 33 H 1.07999 * 126.57693 * 180.23874 * 4 3 2 34 34 H 1.08997 * 109.47249 * 55.01800 * 8 6 5 35 35 H 1.09000 * 109.46670 * 295.01321 * 8 6 5 36 36 H 1.09003 * 109.46972 * 175.01690 * 8 6 5 37 37 H 1.08999 * 109.46469 * 204.41772 * 12 11 9 38 38 H 1.08998 * 109.47262 * 324.42234 * 12 11 9 39 39 H 0.97005 * 119.99916 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.47063 * 209.99706 * 21 11 9 41 41 H 1.08996 * 109.47203 * 330.00452 * 21 11 9 42 42 H 1.08003 * 120.79262 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.42451 * 180.22443 * 24 23 22 44 44 H 1.07993 * 119.62322 * 179.74565 * 25 24 23 45 45 H 1.07999 * 119.61920 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0058 5 6 3.5814 -0.7122 0.0007 6 6 4.7706 -1.6377 0.0018 7 1 5.6885 -1.0500 0.0022 8 6 4.7292 -2.5199 1.2512 9 6 4.7315 -2.5073 -1.2285 10 8 4.0992 -3.5421 -1.2198 11 7 5.3991 -2.1348 -2.3385 12 6 6.2517 -0.9436 -2.3153 13 6 7.6119 -1.3098 -1.7798 14 1 7.8203 -2.3278 -1.4857 15 6 8.5903 -0.3451 -1.6653 16 7 9.7772 -0.6645 -1.1975 17 14 8.2296 1.4160 -2.1733 18 1 7.6998 2.1687 -1.0081 19 1 9.4799 2.0592 -2.6513 20 1 7.2225 1.4199 -3.2646 21 6 5.2723 -2.9210 -3.5681 22 6 4.1231 -2.3914 -4.3866 23 6 2.8449 -2.9009 -4.2144 24 6 1.8176 -2.3804 -4.9859 25 6 2.1013 -1.3853 -5.9025 26 7 3.3302 -0.9283 -6.0430 27 6 4.3306 -1.3958 -5.3220 28 8 2.2924 -1.0894 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.9664 2.1204 -0.0004 33 1 4.5211 1.2434 0.0109 34 1 3.7730 -3.0412 1.2964 35 1 4.8465 -1.8982 2.1388 36 1 5.5386 -3.2487 1.2084 37 1 6.3533 -0.5499 -3.3267 38 1 5.8006 -0.1863 -1.6742 39 1 10.4654 0.0143 -1.1166 40 1 6.1942 -2.8452 -4.1445 41 1 5.0870 -3.9647 -3.3144 42 1 2.6535 -3.6820 -3.4934 43 1 0.8091 -2.7508 -4.8757 44 1 1.3074 -0.9774 -6.5104 45 1 5.3238 -0.9964 -5.4648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742589757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:37 Heat of formation + Delta-G solvation = -5.350441 kcal Electronic energy + Delta-G solvation = -28885.985389 eV Core-core repulsion = 25062.493083 eV Total energy + Delta-G solvation = -3823.492306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.65373 -41.46357 -40.56681 -37.07042 -35.47127 -34.68757 -34.12678 -33.56892 -32.62335 -31.92607 -30.00088 -27.94708 -27.27336 -25.08160 -24.61262 -24.09681 -22.97513 -22.74212 -21.33596 -19.97321 -19.13060 -18.41548 -18.00906 -17.69916 -17.26470 -17.14280 -16.84305 -16.46636 -16.08989 -15.73394 -15.30766 -14.84672 -14.71606 -14.55695 -14.33054 -14.30532 -14.00259 -13.95156 -13.88246 -13.73992 -13.72068 -13.39469 -13.16635 -12.97527 -12.85506 -12.70755 -12.51703 -12.50206 -12.22513 -12.06703 -11.71545 -11.05941 -10.86591 -10.82665 -10.68134 -10.51424 -10.02642 -9.55004 -9.23611 -8.31635 -6.39578 0.06810 0.28070 0.66061 1.36801 1.40638 1.46958 1.48507 1.64386 2.01114 2.18065 2.31759 2.89314 3.01856 3.47972 3.52645 3.60545 3.81504 3.88003 3.89885 4.03246 4.05274 4.06189 4.11756 4.29256 4.41567 4.53519 4.57770 4.63349 4.67393 4.71356 4.72221 4.77181 4.78652 4.82677 4.86243 4.91187 5.02671 5.12707 5.14760 5.24256 5.31712 5.39839 5.55502 5.61338 5.72695 6.14771 6.19713 6.47254 6.67368 6.96050 7.13228 7.27834 8.83951 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008146 B = 0.006247 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.370290 B = 4480.924369 C = 5999.450949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.023 4.023 3 C -0.220 4.220 4 C -0.206 4.206 5 C -0.016 4.016 6 C -0.034 4.034 7 H 0.124 0.876 8 C -0.124 4.124 9 C 0.527 3.473 10 O -0.574 6.574 11 N -0.587 5.587 12 C 0.220 3.780 13 C -0.541 4.541 14 H 0.038 0.962 15 C 0.030 3.970 16 N -0.934 5.934 17 Si 0.925 3.075 18 H -0.259 1.259 19 H -0.283 1.283 20 H -0.244 1.244 21 C 0.157 3.843 22 C -0.157 4.157 23 C -0.066 4.066 24 C -0.168 4.168 25 C 0.093 3.907 26 N -0.507 5.507 27 C 0.101 3.899 28 O -0.185 6.185 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.269 0.731 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.165 0.835 44 H 0.188 0.812 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.067 3.079 -2.106 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.238 4.238 4 C -0.225 4.225 5 C -0.066 4.066 6 C -0.055 4.055 7 H 0.142 0.858 8 C -0.181 4.181 9 C 0.315 3.685 10 O -0.455 6.455 11 N -0.316 5.316 12 C 0.098 3.902 13 C -0.579 4.579 14 H 0.056 0.944 15 C -0.170 4.170 16 N -0.573 5.573 17 Si 0.748 3.252 18 H -0.183 1.183 19 H -0.209 1.209 20 H -0.167 1.167 21 C 0.034 3.966 22 C -0.160 4.160 23 C -0.093 4.093 24 C -0.187 4.187 25 C -0.064 4.064 26 N -0.215 5.215 27 C -0.056 4.056 28 O -0.082 6.082 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.191 0.809 33 H 0.170 0.830 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.146 0.854 43 H 0.182 0.818 44 H 0.205 0.795 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.126 2.971 -2.690 19.542 hybrid contribution 0.955 0.004 0.621 1.139 sum -18.171 2.975 -2.069 18.529 Atomic orbital electron populations 1.20493 0.82063 1.04680 1.05299 1.23346 0.95775 0.83607 1.04522 1.21816 0.91569 1.00675 1.09786 1.21859 0.99639 0.93364 1.07659 1.21694 0.82495 0.93970 1.08429 1.19944 0.94532 0.96089 0.94918 0.85789 1.21578 1.02635 0.98987 0.94914 1.20504 0.77848 0.85522 0.84584 1.90554 1.44964 1.25852 1.84151 1.47956 1.44987 1.28812 1.09843 1.19648 0.88548 0.83705 0.98298 1.21440 0.96209 0.96412 1.43837 0.94395 1.25626 0.94277 1.02980 0.94102 1.70025 1.04883 1.35995 1.46430 0.86035 0.78769 0.79883 0.80483 1.18329 1.20908 1.16719 1.20239 0.96462 0.95469 0.84405 1.21245 0.96611 0.99364 0.98807 1.21723 0.92333 0.98248 0.96973 1.22447 1.01064 0.98329 0.96861 1.23342 0.93945 0.93189 0.95941 1.67731 1.01209 1.27607 1.25001 1.22773 0.98737 0.92607 0.91483 1.83990 1.16319 1.36260 1.71677 0.90494 0.87430 0.88023 0.80909 0.83026 0.92039 0.89794 0.92130 0.93689 0.94489 0.92139 0.88604 0.89854 0.85363 0.81762 0.79533 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.42 71.24 0.74 -0.36 16 2 C -0.02 -0.60 7.32 24.83 0.18 -0.42 16 3 C -0.22 -5.87 10.81 22.19 0.24 -5.63 16 4 C -0.21 -6.62 10.62 22.19 0.24 -6.39 16 5 C -0.02 -0.56 5.73 24.83 0.14 -0.42 16 6 C -0.03 -1.29 2.37 -12.29 -0.03 -1.32 16 7 H 0.12 5.03 5.79 -2.39 -0.01 5.01 16 8 C -0.12 -4.21 8.74 71.98 0.63 -3.58 16 9 C 0.53 21.94 6.61 87.66 0.58 22.52 16 10 O -0.57 -25.36 15.81 -3.02 -0.05 -25.41 16 11 N -0.59 -23.91 2.45 -830.50 -2.04 -25.95 16 12 C 0.22 9.47 3.86 85.63 0.33 9.80 16 13 C -0.54 -27.99 9.30 25.60 0.24 -27.75 16 14 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 15 C 0.03 1.60 5.47 84.66 0.46 2.06 16 16 N -0.93 -53.99 13.96 21.45 0.30 -53.69 16 17 Si 0.93 39.34 27.47 68.60 1.88 41.23 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 21 C 0.16 5.63 5.57 85.63 0.48 6.10 16 22 C -0.16 -5.06 5.48 -19.77 -0.11 -5.17 16 23 C -0.07 -1.94 9.86 22.47 0.22 -1.72 16 24 C -0.17 -3.87 10.11 22.36 0.23 -3.64 16 25 C 0.09 2.18 11.18 84.69 0.95 3.12 16 26 N -0.51 -15.04 10.36 -195.84 -2.03 -17.07 16 27 C 0.10 3.15 10.86 84.67 0.92 4.07 16 28 O -0.19 -6.36 10.65 -2.46 -0.03 -6.39 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 35 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.87 7.09 -2.39 -0.02 1.86 16 38 H 0.04 1.56 5.75 -2.39 -0.01 1.55 16 39 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 40 H 0.10 3.29 8.02 -2.39 -0.02 3.27 16 41 H 0.08 3.02 7.31 -2.39 -0.02 3.00 16 42 H 0.13 3.95 7.96 -2.91 -0.02 3.93 16 43 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.16 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -68.39 383.06 5.41 -62.98 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.93 Total: 33.00 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 6.44 Total: -8.71 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -3.77 Total: -96.71 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.07 Total: -31.79 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.88 Total: 41.23 kcal Total: -68.39 5.41 -62.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742589757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.633 kcal (2) G-P(sol) polarization free energy of solvation -68.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds