Wall clock time and date at job start Tue Mar 31 2020 15:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35288 * 126.19335 * 2 1 4 4 C 1.39959 * 107.97123 * 180.28374 * 3 2 1 5 5 N 1.30832 * 108.36439 * 359.74030 * 4 3 2 6 6 N 1.35840 * 126.19591 * 179.84001 * 2 1 3 7 7 C 1.39813 * 126.10173 * 359.97438 * 6 2 1 8 8 C 1.39063 * 119.92117 * 144.72141 * 7 6 2 9 9 C 1.37704 * 120.08862 * 180.02562 * 8 7 6 10 10 C 1.39760 * 119.91173 * 0.23004 * 9 8 7 11 11 C 1.47536 * 120.08169 * 179.74617 * 10 9 8 12 12 O 1.21499 * 120.00157 * 359.97438 * 11 10 9 13 13 O 1.34742 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.45193 * 117.00244 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47202 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47044 * 300.00130 * 15 14 13 17 17 C 1.52995 * 109.47068 * 60.00269 * 15 14 13 18 18 C 1.50701 * 109.46856 * 180.02562 * 15 14 13 19 19 H 1.08001 * 120.00292 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99771 * 179.97438 * 18 15 14 21 21 N 1.31519 * 120.00017 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99970 * 180.02562 * 20 18 15 23 23 H 1.48507 * 109.47316 * 60.00227 * 22 20 18 24 24 H 1.48502 * 109.47040 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47122 * 299.99815 * 22 20 18 26 26 C 1.39773 * 119.83659 * 359.49199 * 10 9 8 27 27 C 1.37700 * 119.91164 * 0.55250 * 26 10 9 28 28 H 1.08999 * 109.47241 * 270.16028 * 1 2 3 29 29 H 1.09002 * 109.47213 * 30.16362 * 1 2 3 30 30 H 1.09001 * 109.47265 * 150.15887 * 1 2 3 31 31 H 1.08006 * 126.01297 * 0.02562 * 3 2 1 32 32 H 1.07995 * 125.81639 * 179.73296 * 4 3 2 33 33 H 1.08013 * 119.95760 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.04172 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47621 * 300.00897 * 14 13 11 36 36 H 1.09005 * 109.47219 * 60.00710 * 14 13 11 37 37 H 1.09001 * 109.47186 * 60.00359 * 16 15 14 38 38 H 1.09001 * 109.47046 * 179.97438 * 16 15 14 39 39 H 1.08997 * 109.47036 * 299.99570 * 16 15 14 40 40 H 1.09001 * 109.47363 * 60.00103 * 17 15 14 41 41 H 1.09001 * 109.47278 * 180.02562 * 17 15 14 42 42 H 1.08996 * 109.47075 * 300.00124 * 17 15 14 43 43 H 0.96995 * 119.99755 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.04330 * 180.23358 * 26 10 9 45 45 H 1.07996 * 119.95905 * 179.70315 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3058 1.0918 0.0000 4 6 3.6352 0.6542 -0.0066 5 7 3.6385 -0.6541 -0.0048 6 7 2.3092 -1.0962 0.0031 7 6 1.8840 -2.4282 0.0073 8 6 2.6102 -3.3903 -0.6861 9 6 2.1943 -4.7030 -0.6847 10 6 1.0381 -5.0670 0.0109 11 6 0.5860 -6.4714 0.0102 12 8 1.2188 -7.3131 -0.5959 13 8 -0.5287 -6.8207 0.6818 14 6 -0.9142 -8.2198 0.6370 15 6 -2.1941 -8.4225 1.4504 16 6 -1.9468 -8.0079 2.9022 17 6 -3.3152 -7.5655 0.8591 18 6 -2.5938 -9.8748 1.4043 19 1 -1.9946 -10.5825 0.8507 20 6 -3.7240 -10.3002 2.0699 21 7 -4.4534 -9.4385 2.7445 22 14 -4.2190 -12.1005 2.0135 23 1 -3.1304 -12.9316 2.5876 24 1 -5.4607 -12.2974 2.8038 25 1 -4.4593 -12.5039 0.6046 26 6 0.3140 -4.0983 0.7115 27 6 0.7357 -2.7874 0.7047 28 1 -0.3634 0.0029 1.0276 29 1 -0.3634 0.8885 -0.5164 30 1 -0.3634 -0.8914 -0.5114 31 1 1.9758 2.1202 0.0004 32 1 4.5093 1.2884 -0.0123 33 1 3.5012 -3.1074 -1.2273 34 1 2.7586 -5.4495 -1.2239 35 1 -1.0907 -8.5152 -0.3972 36 1 -0.1154 -8.8305 1.0579 37 1 -1.6575 -6.9575 2.9359 38 1 -2.8588 -8.1518 3.4816 39 1 -1.1482 -8.6185 3.3234 40 1 -3.4914 -7.8609 -0.1752 41 1 -4.2269 -7.7095 1.4388 42 1 -3.0258 -6.5152 0.8927 43 1 -5.2482 -9.7378 3.2130 44 1 -0.5779 -4.3766 1.2533 45 1 0.1741 -2.0375 1.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764834468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:03 Heat of formation + Delta-G solvation = 13.832135 kcal Electronic energy + Delta-G solvation = -26946.790918 eV Core-core repulsion = 23124.130432 eV Total energy + Delta-G solvation = -3822.660487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89986 -40.24273 -38.81325 -36.58946 -34.88327 -33.96016 -32.77898 -31.36423 -31.18497 -29.66482 -27.43665 -25.99967 -25.65468 -25.22736 -24.17750 -23.23475 -21.45528 -20.95937 -20.20878 -18.88241 -17.99055 -17.64857 -16.49782 -15.91116 -15.82828 -15.71019 -15.18274 -15.04144 -14.87059 -14.54139 -14.11779 -13.78940 -13.56818 -13.39936 -13.24896 -13.18623 -12.97060 -12.68225 -12.63585 -12.30306 -11.89624 -11.52573 -11.48225 -11.21145 -11.01988 -10.97602 -10.76347 -10.44961 -10.36884 -10.32212 -10.15585 -9.93928 -9.45102 -9.39197 -9.35813 -9.23602 -8.80032 -8.52648 -8.39843 -6.04590 -4.16146 0.21993 1.01666 1.55036 2.02160 2.43027 2.64437 3.08623 3.28011 3.32491 3.36565 3.56129 4.18177 4.26195 4.36206 4.52752 4.55524 4.67810 4.89975 4.96038 5.06268 5.14172 5.19162 5.21928 5.28755 5.30932 5.49802 5.67511 5.72112 5.82645 5.89889 6.04182 6.06897 6.10382 6.26253 6.33725 6.43258 6.69836 6.82594 6.94721 6.98170 7.09443 7.10595 7.29105 7.36452 7.58771 7.67414 8.01929 8.08833 8.17901 8.36041 8.83428 9.49391 10.96611 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.002264 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.309101 B =12365.486433 C =13068.341388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.089 3.911 3 C -0.266 4.266 4 C 0.056 3.944 5 N -0.288 5.288 6 N -0.329 5.329 7 C 0.179 3.821 8 C -0.125 4.125 9 C -0.038 4.038 10 C -0.118 4.118 11 C 0.499 3.501 12 O -0.514 6.514 13 O -0.343 6.343 14 C 0.085 3.915 15 C 0.070 3.930 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.513 4.513 19 H 0.056 0.944 20 C 0.068 3.932 21 N -0.882 5.882 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.037 4.037 27 C -0.146 4.146 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.189 0.811 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.084 0.916 42 H 0.016 0.984 43 H 0.262 0.738 44 H 0.154 0.846 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.998 21.147 -4.608 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.034 4.034 3 C -0.295 4.295 4 C -0.131 4.131 5 N -0.106 5.106 6 N -0.106 5.106 7 C 0.087 3.913 8 C -0.145 4.145 9 C -0.057 4.057 10 C -0.120 4.120 11 C 0.343 3.657 12 O -0.404 6.404 13 O -0.258 6.258 14 C 0.012 3.988 15 C 0.070 3.930 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.551 4.551 19 H 0.075 0.925 20 C -0.133 4.133 21 N -0.520 5.520 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.056 4.056 27 C -0.167 4.167 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.206 0.794 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.103 0.897 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.172 0.828 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.668 19.751 -4.649 22.925 hybrid contribution -0.547 -0.325 -0.080 0.641 sum 10.121 19.427 -4.729 22.410 Atomic orbital electron populations 1.20682 0.86813 1.04596 1.03826 1.21444 0.95026 0.86535 1.00426 1.21329 0.92222 0.99112 1.16805 1.24034 0.98414 0.92058 0.98644 1.77526 0.95586 1.13126 1.24350 1.45945 1.04479 1.03491 1.56699 1.17677 0.95359 0.80753 0.97551 1.20877 1.01299 0.91854 1.00435 1.21190 0.93741 0.95587 0.95178 1.19411 0.97883 0.91535 1.03156 1.20985 0.79609 0.88504 0.76566 1.90808 1.55697 1.52059 1.41870 1.86561 1.39857 1.33785 1.65617 1.23739 0.99190 0.74551 1.01320 1.18249 0.87585 0.95657 0.91491 1.21777 1.01827 0.96074 0.99070 1.21773 1.02297 0.95521 0.99126 1.20892 1.09859 0.92033 1.32289 0.92529 1.24856 0.96006 0.97628 0.94851 1.69813 1.16184 1.33571 1.32467 0.86595 0.77870 0.85007 0.78160 1.20238 1.21208 1.20233 1.21449 0.98741 0.90739 0.94670 1.21055 0.97221 0.97400 1.00982 0.89551 0.89262 0.90246 0.82911 0.79433 0.84181 0.83508 0.92352 0.92354 0.96496 0.89698 0.95782 0.95786 0.89704 0.96494 0.92829 0.82801 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 8.60 36.00 0.31 -0.30 16 2 C 0.09 0.81 6.77 -81.87 -0.55 0.25 16 3 C -0.27 -2.15 10.72 -39.99 -0.43 -2.58 16 4 C 0.06 0.49 12.02 -17.33 -0.21 0.28 16 5 N -0.29 -3.40 12.33 30.64 0.38 -3.02 16 6 N -0.33 -3.72 3.74 -6.84 -0.03 -3.75 16 7 C 0.18 2.04 6.29 -83.60 -0.53 1.52 16 8 C -0.12 -1.43 9.73 -39.47 -0.38 -1.81 16 9 C -0.04 -0.47 9.58 -39.21 -0.38 -0.85 16 10 C -0.12 -1.65 5.87 -104.96 -0.62 -2.27 16 11 C 0.50 8.84 7.89 34.52 0.27 9.11 16 12 O -0.51 -10.24 16.13 -19.27 -0.31 -10.55 16 13 O -0.34 -6.62 8.12 -40.61 -0.33 -6.95 16 14 C 0.08 1.84 4.27 37.16 0.16 2.00 16 15 C 0.07 1.69 0.58 -155.66 -0.09 1.60 16 16 C -0.13 -3.05 8.11 37.16 0.30 -2.75 16 17 C -0.13 -3.02 8.11 37.15 0.30 -2.72 16 18 C -0.51 -13.49 8.01 -34.44 -0.28 -13.76 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.07 1.80 5.15 -17.81 -0.09 1.71 16 21 N -0.88 -23.57 9.36 55.43 0.52 -23.05 16 22 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.04 -0.44 9.61 -39.20 -0.38 -0.82 16 27 C -0.15 -1.52 8.27 -39.47 -0.33 -1.84 16 28 H 0.09 0.42 7.74 -51.93 -0.40 0.01 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.51 6.92 -51.93 -0.36 0.15 16 31 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.15 1.72 7.64 -52.49 -0.40 1.32 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 38 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 42 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 43 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 44 H 0.15 1.78 7.60 -52.49 -0.40 1.38 16 45 H 0.14 1.13 6.11 -52.49 -0.32 0.81 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -30.43 374.55 -8.29 -38.72 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.23 Total: 0.58 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.91 Total: -13.22 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.87 Total: -29.82 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.64 Total: -17.50 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.43 -8.29 -38.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.553 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds