Wall clock time and date at job start Tue Mar 31 2020 15:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35288 * 126.19335 * 2 1 4 4 C 1.39959 * 107.97123 * 180.28374 * 3 2 1 5 5 N 1.30832 * 108.36439 * 359.74030 * 4 3 2 6 6 N 1.35840 * 126.19591 * 179.84001 * 2 1 3 7 7 C 1.39813 * 126.10173 * 359.97438 * 6 2 1 8 8 C 1.39063 * 119.92117 * 144.72141 * 7 6 2 9 9 C 1.37704 * 120.08862 * 180.02562 * 8 7 6 10 10 C 1.39760 * 119.91173 * 0.23004 * 9 8 7 11 11 C 1.47536 * 120.08169 * 179.74617 * 10 9 8 12 12 O 1.21499 * 120.00157 * 359.97438 * 11 10 9 13 13 O 1.34742 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.45193 * 117.00244 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47202 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47044 * 300.00130 * 15 14 13 17 17 C 1.52995 * 109.47068 * 60.00269 * 15 14 13 18 18 C 1.50701 * 109.46856 * 180.02562 * 15 14 13 19 19 H 1.08001 * 120.00292 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99771 * 179.97438 * 18 15 14 21 21 N 1.31519 * 120.00017 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99970 * 180.02562 * 20 18 15 23 23 H 1.48507 * 109.47316 * 60.00227 * 22 20 18 24 24 H 1.48502 * 109.47040 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47122 * 299.99815 * 22 20 18 26 26 C 1.39773 * 119.83659 * 359.49199 * 10 9 8 27 27 C 1.37700 * 119.91164 * 0.55250 * 26 10 9 28 28 H 1.08999 * 109.47241 * 270.16028 * 1 2 3 29 29 H 1.09002 * 109.47213 * 30.16362 * 1 2 3 30 30 H 1.09001 * 109.47265 * 150.15887 * 1 2 3 31 31 H 1.08006 * 126.01297 * 0.02562 * 3 2 1 32 32 H 1.07995 * 125.81639 * 179.73296 * 4 3 2 33 33 H 1.08013 * 119.95760 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.04172 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47621 * 300.00897 * 14 13 11 36 36 H 1.09005 * 109.47219 * 60.00710 * 14 13 11 37 37 H 1.09001 * 109.47186 * 60.00359 * 16 15 14 38 38 H 1.09001 * 109.47046 * 179.97438 * 16 15 14 39 39 H 1.08997 * 109.47036 * 299.99570 * 16 15 14 40 40 H 1.09001 * 109.47363 * 60.00103 * 17 15 14 41 41 H 1.09001 * 109.47278 * 180.02562 * 17 15 14 42 42 H 1.08996 * 109.47075 * 300.00124 * 17 15 14 43 43 H 0.96995 * 119.99755 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.04330 * 180.23358 * 26 10 9 45 45 H 1.07996 * 119.95905 * 179.70315 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3058 1.0918 0.0000 4 6 3.6352 0.6542 -0.0066 5 7 3.6385 -0.6541 -0.0048 6 7 2.3092 -1.0962 0.0031 7 6 1.8840 -2.4282 0.0073 8 6 2.6102 -3.3903 -0.6861 9 6 2.1943 -4.7030 -0.6847 10 6 1.0381 -5.0670 0.0109 11 6 0.5860 -6.4714 0.0102 12 8 1.2188 -7.3131 -0.5959 13 8 -0.5287 -6.8207 0.6818 14 6 -0.9142 -8.2198 0.6370 15 6 -2.1941 -8.4225 1.4504 16 6 -1.9468 -8.0079 2.9022 17 6 -3.3152 -7.5655 0.8591 18 6 -2.5938 -9.8748 1.4043 19 1 -1.9946 -10.5825 0.8507 20 6 -3.7240 -10.3002 2.0699 21 7 -4.4534 -9.4385 2.7445 22 14 -4.2190 -12.1005 2.0135 23 1 -3.1304 -12.9316 2.5876 24 1 -5.4607 -12.2974 2.8038 25 1 -4.4593 -12.5039 0.6046 26 6 0.3140 -4.0983 0.7115 27 6 0.7357 -2.7874 0.7047 28 1 -0.3634 0.0029 1.0276 29 1 -0.3634 0.8885 -0.5164 30 1 -0.3634 -0.8914 -0.5114 31 1 1.9758 2.1202 0.0004 32 1 4.5093 1.2884 -0.0123 33 1 3.5012 -3.1074 -1.2273 34 1 2.7586 -5.4495 -1.2239 35 1 -1.0907 -8.5152 -0.3972 36 1 -0.1154 -8.8305 1.0579 37 1 -1.6575 -6.9575 2.9359 38 1 -2.8588 -8.1518 3.4816 39 1 -1.1482 -8.6185 3.3234 40 1 -3.4914 -7.8609 -0.1752 41 1 -4.2269 -7.7095 1.4388 42 1 -3.0258 -6.5152 0.8927 43 1 -5.2482 -9.7378 3.2130 44 1 -0.5779 -4.3766 1.2533 45 1 0.1741 -2.0375 1.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764834468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:03 Heat of formation + Delta-G solvation = 0.081738 kcal Electronic energy + Delta-G solvation = -26947.387180 eV Core-core repulsion = 23124.130432 eV Total energy + Delta-G solvation = -3823.256749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.61306 -41.58090 -39.88574 -38.24155 -36.62155 -34.79831 -33.48059 -33.21586 -32.11180 -30.60223 -28.00347 -27.64259 -27.55041 -27.13751 -25.30829 -24.13930 -22.54456 -21.80636 -21.03293 -20.71736 -19.21462 -18.51185 -17.84952 -17.76055 -17.36682 -16.70783 -16.64438 -15.93786 -15.88214 -15.51046 -15.03210 -14.89664 -14.82028 -14.68907 -14.47669 -14.12803 -13.87458 -13.74124 -13.60282 -13.49984 -13.29318 -13.11206 -12.91560 -12.81746 -12.65210 -12.35158 -12.31360 -12.13394 -11.75419 -11.72790 -11.71004 -11.29309 -11.20863 -11.18376 -10.73439 -10.39066 -10.28433 -9.95845 -9.32889 -8.04015 -6.21626 -0.74813 0.12237 0.76503 1.28107 1.44943 1.45185 1.47873 1.51911 1.69787 1.82080 2.45664 2.53458 3.19440 3.44567 3.60388 3.61760 3.71043 3.86430 3.99908 4.12167 4.26607 4.26894 4.27269 4.43745 4.60121 4.63582 4.68019 4.75762 4.80310 4.83404 4.92772 5.01718 5.06035 5.06558 5.14338 5.19675 5.21091 5.24963 5.36418 5.41604 5.54231 5.65682 5.65866 5.68609 6.09120 6.10141 6.18985 6.38163 6.60270 6.67592 6.83010 7.46004 8.95288 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.002264 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.309101 B =12365.486433 C =13068.341388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.078 3.922 3 C -0.267 4.267 4 C 0.059 3.941 5 N -0.333 5.333 6 N -0.347 5.347 7 C 0.183 3.817 8 C -0.128 4.128 9 C -0.034 4.034 10 C -0.140 4.140 11 C 0.500 3.500 12 O -0.543 6.543 13 O -0.342 6.342 14 C 0.096 3.904 15 C 0.062 3.938 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.535 4.535 19 H 0.048 0.952 20 C 0.029 3.971 21 N -0.898 5.898 22 Si 0.951 3.049 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.275 1.275 26 C -0.031 4.031 27 C -0.136 4.136 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.182 0.818 32 H 0.219 0.781 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.262 0.738 44 H 0.159 0.841 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.016 23.587 -4.510 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.044 4.044 3 C -0.294 4.294 4 C -0.128 4.128 5 N -0.150 5.150 6 N -0.125 5.125 7 C 0.090 3.910 8 C -0.148 4.148 9 C -0.053 4.053 10 C -0.142 4.142 11 C 0.347 3.653 12 O -0.435 6.435 13 O -0.258 6.258 14 C 0.023 3.977 15 C 0.062 3.938 16 C -0.177 4.177 17 C -0.177 4.177 18 C -0.573 4.573 19 H 0.067 0.933 20 C -0.171 4.171 21 N -0.536 5.536 22 Si 0.777 3.223 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.201 1.201 26 C -0.049 4.049 27 C -0.157 4.157 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.199 0.801 32 H 0.235 0.765 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.177 0.823 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.688 22.220 -4.553 25.074 hybrid contribution -0.466 -0.864 -0.131 0.991 sum 10.223 21.356 -4.683 24.135 Atomic orbital electron populations 1.20822 0.84786 1.05370 1.05000 1.22089 0.96437 0.86148 0.99726 1.21761 0.91719 1.00247 1.15710 1.24682 1.00032 0.91509 0.96576 1.77498 0.96284 1.14790 1.26478 1.46058 1.04863 1.03621 1.57954 1.17876 0.95242 0.81277 0.96591 1.20912 1.01660 0.91478 1.00710 1.21174 0.93209 0.96053 0.94828 1.19241 0.99422 0.89652 1.05854 1.21601 0.78524 0.89818 0.75391 1.90787 1.56340 1.53253 1.43149 1.86537 1.40928 1.32066 1.66282 1.23324 0.98047 0.75992 1.00327 1.18267 0.88678 0.94771 0.92120 1.21634 1.00533 0.97165 0.98393 1.21625 1.01123 0.96634 0.98291 1.21169 1.10207 0.93335 1.32543 0.93348 1.25485 0.96033 1.00991 0.94640 1.69921 1.16254 1.34796 1.32604 0.85736 0.77547 0.80968 0.78085 1.20146 1.20672 1.20059 1.21498 0.98499 0.90930 0.94003 1.21217 0.96907 0.97127 1.00407 0.88052 0.87238 0.90755 0.80116 0.76475 0.83667 0.83516 0.93072 0.93201 0.94547 0.91740 0.96311 0.96203 0.91766 0.94469 0.92817 0.82297 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 8.60 71.23 0.61 -0.28 16 2 C 0.08 1.21 6.77 41.26 0.28 1.49 16 3 C -0.27 -3.47 10.72 22.01 0.24 -3.24 16 4 C 0.06 0.89 12.02 85.26 1.02 1.92 16 5 N -0.33 -7.37 12.33 -56.97 -0.70 -8.07 16 6 N -0.35 -7.24 3.74 -175.56 -0.66 -7.90 16 7 C 0.18 3.92 6.29 38.27 0.24 4.16 16 8 C -0.13 -2.84 9.73 22.34 0.22 -2.62 16 9 C -0.03 -0.83 9.58 22.51 0.22 -0.61 16 10 C -0.14 -3.86 5.87 -20.09 -0.12 -3.98 16 11 C 0.50 17.83 7.89 70.27 0.55 18.38 16 12 O -0.54 -22.12 16.13 19.84 0.32 -21.80 16 13 O -0.34 -13.17 8.12 -56.52 -0.46 -13.63 16 14 C 0.10 4.24 4.27 71.98 0.31 4.55 16 15 C 0.06 2.98 0.58 -52.93 -0.03 2.95 16 16 C -0.12 -5.60 8.11 71.98 0.58 -5.02 16 17 C -0.12 -5.54 8.11 71.98 0.58 -4.95 16 18 C -0.53 -28.42 8.01 25.60 0.21 -28.22 16 19 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 20 C 0.03 1.52 5.15 84.66 0.44 1.95 16 21 N -0.90 -48.12 9.36 21.45 0.20 -47.92 16 22 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 C -0.03 -0.69 9.61 22.51 0.22 -0.47 16 27 C -0.14 -2.55 8.27 22.34 0.18 -2.36 16 28 H 0.10 0.60 7.74 -2.39 -0.02 0.59 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.75 6.92 -2.39 -0.02 0.74 16 31 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.22 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.15 3.03 8.06 -2.90 -0.02 3.01 16 34 H 0.15 3.51 7.64 -2.91 -0.02 3.49 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.04 1.51 7.68 -2.39 -0.02 1.49 16 38 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 42 H 0.04 1.52 7.68 -2.39 -0.02 1.51 16 43 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 44 H 0.16 3.39 7.60 -2.91 -0.02 3.37 16 45 H 0.17 2.18 6.11 -2.91 -0.02 2.16 16 Total: -1.00 -65.59 374.55 7.48 -58.11 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.00 Total: 13.22 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 5.75 Total: -16.37 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -1.16 Total: -63.89 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.14 Total: -35.43 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.59 7.48 -58.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.194 kcal (2) G-P(sol) polarization free energy of solvation -65.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds