Wall clock time and date at job start Tue Mar 31 2020 15:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30663 * 125.95533 * 2 1 4 4 N 1.40010 * 108.52906 * 179.97438 * 3 2 1 5 5 C 1.46506 * 125.89208 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47418 * 305.01947 * 5 4 3 7 7 O 1.20833 * 119.99595 * 0.02562 * 6 5 4 8 8 O 1.34224 * 120.00302 * 180.02562 * 6 5 4 9 9 C 1.45206 * 117.00077 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46777 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00305 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00241 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47164 * 89.99694 * 16 14 12 18 18 H 1.48496 * 109.47236 * 210.00271 * 16 14 12 19 19 H 1.48507 * 109.46844 * 329.99606 * 16 14 12 20 20 C 1.34821 * 108.21263 * 0.22481 * 4 3 2 21 21 C 1.36438 * 107.60740 * 359.64256 * 20 4 3 22 22 C 1.48470 * 126.22259 * 180.13523 * 21 20 4 23 23 C 1.39303 * 120.11707 * 129.98517 * 22 21 20 24 24 C 1.38030 * 119.88212 * 179.70025 * 23 22 21 25 25 C 1.38324 * 120.11397 * 0.57480 * 24 23 22 26 26 C 1.38318 * 120.23517 * 359.72461 * 25 24 23 27 27 C 1.38021 * 120.11834 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47041 * 90.02152 * 1 2 3 29 29 H 1.08994 * 109.47161 * 210.02180 * 1 2 3 30 30 H 1.08997 * 109.46727 * 330.02350 * 1 2 3 31 31 H 1.09009 * 109.46411 * 185.02385 * 5 4 3 32 32 H 1.08995 * 109.47213 * 65.02614 * 5 4 3 33 33 H 1.09000 * 109.47070 * 300.00162 * 9 8 6 34 34 H 1.09001 * 109.46626 * 60.00180 * 9 8 6 35 35 H 1.09000 * 109.47486 * 299.99948 * 10 9 8 36 36 H 1.09001 * 109.47362 * 60.00671 * 10 9 8 37 37 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 38 38 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 39 39 H 0.96992 * 120.00516 * 180.02562 * 15 14 12 40 40 H 1.07996 * 126.19592 * 179.76740 * 20 4 3 41 41 H 1.07998 * 120.06132 * 359.97438 * 23 22 21 42 42 H 1.08000 * 119.94342 * 180.30220 * 24 23 22 43 43 H 1.08001 * 119.87866 * 179.69742 * 25 24 23 44 44 H 1.07996 * 119.93855 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.06108 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0577 0.0000 4 7 3.6100 0.6384 0.0006 5 6 4.7850 1.5136 0.0003 6 6 4.7011 2.4667 -1.1639 7 8 3.7565 2.4201 -1.9160 8 8 5.6756 3.3674 -1.3655 9 6 5.5284 4.2538 -2.5062 10 6 6.7264 5.2032 -2.5721 11 6 6.5710 6.1377 -3.7736 12 6 7.7513 7.0725 -3.8390 13 1 8.5342 7.0064 -3.0979 14 6 7.8322 8.0113 -4.8454 15 7 8.8624 8.8268 -4.9028 16 14 6.4785 8.1251 -6.1276 17 1 5.4360 9.0755 -5.6639 18 1 7.0511 8.6058 -7.4107 19 1 5.8722 6.7843 -6.3277 20 6 3.6285 -0.7097 -0.0041 21 6 2.3339 -1.1402 0.0006 22 6 1.8793 -2.5536 0.0007 23 6 0.9319 -2.9831 0.9272 24 6 0.5081 -4.2967 0.9190 25 6 1.0314 -5.1890 0.0007 26 6 1.9770 -4.7692 -0.9174 27 6 2.4030 -3.4564 -0.9219 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 5.6879 0.9094 -0.0891 32 1 4.8170 2.0792 0.9314 33 1 5.4813 3.6635 -3.4213 34 1 4.6114 4.8333 -2.3999 35 1 6.7731 5.7935 -1.6569 36 1 7.6437 4.6240 -2.6781 37 1 6.5241 5.5478 -4.6890 38 1 5.6538 6.7169 -3.6673 39 1 8.9191 9.4875 -5.6106 40 1 4.5087 -1.3354 -0.0084 41 1 0.5263 -2.2884 1.6478 42 1 -0.2300 -4.6295 1.6338 43 1 0.7007 -6.2171 0.0008 44 1 2.3826 -5.4700 -1.6320 45 1 3.1410 -3.1296 -1.6394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769328200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:06 Heat of formation + Delta-G solvation = 6.557556 kcal Electronic energy + Delta-G solvation = -25786.781424 eV Core-core repulsion = 21963.805488 eV Total energy + Delta-G solvation = -3822.975936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69645 -40.30168 -39.11581 -36.72080 -34.48269 -34.13138 -32.35549 -31.93320 -31.28912 -30.55188 -28.82427 -27.85024 -26.41244 -23.47237 -22.91528 -22.70272 -21.30244 -20.79108 -20.34642 -19.79219 -17.82286 -17.68563 -17.00270 -16.75838 -16.55487 -16.04453 -15.46580 -15.33026 -14.88910 -14.55718 -14.32446 -14.22355 -13.84907 -13.68390 -13.35806 -13.33772 -13.06791 -12.80625 -12.76630 -12.62706 -12.37355 -12.24284 -11.97120 -11.66476 -11.37136 -11.11149 -11.03016 -10.83724 -10.65138 -10.51715 -10.08280 -9.87984 -9.78015 -9.55896 -9.46941 -9.28919 -9.23384 -8.59944 -8.31979 -6.10244 -4.09636 0.88101 1.10928 1.54292 1.93314 2.07309 2.48426 2.70844 3.27667 3.35391 3.38605 3.52711 4.09981 4.40096 4.40511 4.52055 4.55671 4.63242 4.67044 4.68136 4.73706 4.84565 4.96264 5.18541 5.22896 5.23600 5.38126 5.39378 5.40496 5.48509 5.60054 5.60611 5.76019 5.78040 5.78552 6.10370 6.21242 6.21815 6.30338 6.32447 6.40247 6.56107 6.58333 6.69667 6.73161 7.15933 7.27457 7.44813 7.65577 7.72821 8.45890 8.93558 9.51172 11.02812 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.001739 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.452938 B =16099.649621 C =16104.205307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.089 3.911 3 N -0.264 5.264 4 N -0.365 5.365 5 C 0.145 3.855 6 C 0.441 3.559 7 O -0.482 6.482 8 O -0.355 6.355 9 C 0.069 3.931 10 C -0.101 4.101 11 C -0.011 4.011 12 C -0.523 4.523 13 H 0.074 0.926 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.076 3.924 21 C -0.203 4.203 22 C 0.007 3.993 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.117 4.117 27 C -0.114 4.114 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.179 0.821 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 -28.872 14.176 35.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 N -0.085 5.085 4 N -0.146 5.146 5 C 0.022 3.978 6 C 0.281 3.719 7 O -0.368 6.368 8 O -0.271 6.271 9 C -0.004 4.004 10 C -0.139 4.139 11 C -0.048 4.048 12 C -0.561 4.561 13 H 0.092 0.908 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.069 4.069 21 C -0.214 4.214 22 C 0.005 3.995 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.132 4.132 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.196 0.804 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.336 -27.297 13.804 34.218 hybrid contribution -0.516 -0.595 -0.959 1.241 sum -15.852 -27.892 12.845 34.558 Atomic orbital electron populations 1.20259 0.86507 1.03304 1.03367 1.22457 0.96950 0.89592 0.98925 1.77398 0.85708 1.22230 1.23143 1.47842 1.05125 1.04154 1.57487 1.21031 0.86234 0.92558 0.97954 1.23364 0.81221 0.81174 0.86154 1.90754 1.32264 1.68631 1.45155 1.86465 1.46265 1.44398 1.49974 1.23551 1.01583 0.90383 0.84918 1.21576 0.94924 0.95959 1.01419 1.19524 0.97942 0.94547 0.92797 1.21042 1.06050 1.15827 1.13183 0.90765 1.25007 0.95606 0.95173 0.97543 1.69901 1.29706 1.20637 1.33668 0.86791 0.82429 0.78908 0.81263 1.20169 1.21223 1.19023 1.22530 0.99111 0.84175 1.01112 1.18688 0.91616 0.92858 1.18238 1.18016 0.96172 0.90217 0.95070 1.21203 0.97598 0.95837 0.98448 1.21086 1.00013 0.93467 0.99005 1.21167 0.97719 0.99612 0.96119 1.21084 0.97671 0.95809 0.98920 1.21240 1.00411 0.93173 0.98415 0.90335 0.90273 0.90683 0.84315 0.85277 0.91469 0.91359 0.91423 0.91443 0.96289 0.96677 0.92606 0.80429 0.85943 0.86083 0.86288 0.86098 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.26 36.01 0.37 -0.29 16 2 C 0.09 1.04 7.23 -82.10 -0.59 0.45 16 3 N -0.26 -3.67 11.60 33.84 0.39 -3.28 16 4 N -0.36 -4.10 3.39 -62.28 -0.21 -4.31 16 5 C 0.15 1.30 7.09 -5.19 -0.04 1.26 16 6 C 0.44 6.14 7.99 36.00 0.29 6.42 16 7 O -0.48 -8.60 15.45 -18.76 -0.29 -8.89 16 8 O -0.35 -5.30 10.22 -39.24 -0.40 -5.70 16 9 C 0.07 1.17 5.47 37.16 0.20 1.37 16 10 C -0.10 -1.96 5.53 -26.73 -0.15 -2.11 16 11 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 12 C -0.52 -14.79 9.66 -34.44 -0.33 -15.13 16 13 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 16 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 20 C 0.08 0.70 11.31 -16.89 -0.19 0.51 16 21 C -0.20 -2.07 5.58 -105.34 -0.59 -2.66 16 22 C 0.01 0.06 5.61 -104.89 -0.59 -0.53 16 23 C -0.11 -0.87 8.56 -39.26 -0.34 -1.20 16 24 C -0.12 -0.79 10.04 -39.63 -0.40 -1.18 16 25 C -0.13 -0.84 10.04 -39.52 -0.40 -1.24 16 26 C -0.12 -0.82 10.03 -39.63 -0.40 -1.22 16 27 C -0.11 -0.93 9.70 -39.27 -0.38 -1.31 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.54 5.86 -51.93 -0.30 0.23 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 0.67 8.07 -51.92 -0.42 0.25 16 32 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 34 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 0.82 7.12 -52.49 -0.37 0.45 16 42 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -35.86 385.83 -8.85 -44.71 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.52 Total: -3.21 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.74 Total: -15.33 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.95 Total: -34.41 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.69 Total: -14.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.86 -8.85 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769328200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.267 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds