Wall clock time and date at job start Tue Mar 31 2020 15:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30663 * 125.95533 * 2 1 4 4 N 1.40010 * 108.52906 * 179.97438 * 3 2 1 5 5 C 1.46506 * 125.89208 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47418 * 305.01947 * 5 4 3 7 7 O 1.20833 * 119.99595 * 0.02562 * 6 5 4 8 8 O 1.34224 * 120.00302 * 180.02562 * 6 5 4 9 9 C 1.45206 * 117.00077 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46777 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00305 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00241 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47164 * 89.99694 * 16 14 12 18 18 H 1.48496 * 109.47236 * 210.00271 * 16 14 12 19 19 H 1.48507 * 109.46844 * 329.99606 * 16 14 12 20 20 C 1.34821 * 108.21263 * 0.22481 * 4 3 2 21 21 C 1.36438 * 107.60740 * 359.64256 * 20 4 3 22 22 C 1.48470 * 126.22259 * 180.13523 * 21 20 4 23 23 C 1.39303 * 120.11707 * 129.98517 * 22 21 20 24 24 C 1.38030 * 119.88212 * 179.70025 * 23 22 21 25 25 C 1.38324 * 120.11397 * 0.57480 * 24 23 22 26 26 C 1.38318 * 120.23517 * 359.72461 * 25 24 23 27 27 C 1.38021 * 120.11834 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47041 * 90.02152 * 1 2 3 29 29 H 1.08994 * 109.47161 * 210.02180 * 1 2 3 30 30 H 1.08997 * 109.46727 * 330.02350 * 1 2 3 31 31 H 1.09009 * 109.46411 * 185.02385 * 5 4 3 32 32 H 1.08995 * 109.47213 * 65.02614 * 5 4 3 33 33 H 1.09000 * 109.47070 * 300.00162 * 9 8 6 34 34 H 1.09001 * 109.46626 * 60.00180 * 9 8 6 35 35 H 1.09000 * 109.47486 * 299.99948 * 10 9 8 36 36 H 1.09001 * 109.47362 * 60.00671 * 10 9 8 37 37 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 38 38 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 39 39 H 0.96992 * 120.00516 * 180.02562 * 15 14 12 40 40 H 1.07996 * 126.19592 * 179.76740 * 20 4 3 41 41 H 1.07998 * 120.06132 * 359.97438 * 23 22 21 42 42 H 1.08000 * 119.94342 * 180.30220 * 24 23 22 43 43 H 1.08001 * 119.87866 * 179.69742 * 25 24 23 44 44 H 1.07996 * 119.93855 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.06108 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0577 0.0000 4 7 3.6100 0.6384 0.0006 5 6 4.7850 1.5136 0.0003 6 6 4.7011 2.4667 -1.1639 7 8 3.7565 2.4201 -1.9160 8 8 5.6756 3.3674 -1.3655 9 6 5.5284 4.2538 -2.5062 10 6 6.7264 5.2032 -2.5721 11 6 6.5710 6.1377 -3.7736 12 6 7.7513 7.0725 -3.8390 13 1 8.5342 7.0064 -3.0979 14 6 7.8322 8.0113 -4.8454 15 7 8.8624 8.8268 -4.9028 16 14 6.4785 8.1251 -6.1276 17 1 5.4360 9.0755 -5.6639 18 1 7.0511 8.6058 -7.4107 19 1 5.8722 6.7843 -6.3277 20 6 3.6285 -0.7097 -0.0041 21 6 2.3339 -1.1402 0.0006 22 6 1.8793 -2.5536 0.0007 23 6 0.9319 -2.9831 0.9272 24 6 0.5081 -4.2967 0.9190 25 6 1.0314 -5.1890 0.0007 26 6 1.9770 -4.7692 -0.9174 27 6 2.4030 -3.4564 -0.9219 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 5.6879 0.9094 -0.0891 32 1 4.8170 2.0792 0.9314 33 1 5.4813 3.6635 -3.4213 34 1 4.6114 4.8333 -2.3999 35 1 6.7731 5.7935 -1.6569 36 1 7.6437 4.6240 -2.6781 37 1 6.5241 5.5478 -4.6890 38 1 5.6538 6.7169 -3.6673 39 1 8.9191 9.4875 -5.6106 40 1 4.5087 -1.3354 -0.0084 41 1 0.5263 -2.2884 1.6478 42 1 -0.2300 -4.6295 1.6338 43 1 0.7007 -6.2171 0.0008 44 1 2.3826 -5.4700 -1.6320 45 1 3.1410 -3.1296 -1.6394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769328200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:06 Heat of formation + Delta-G solvation = -13.324282 kcal Electronic energy + Delta-G solvation = -25787.643565 eV Core-core repulsion = 21963.805488 eV Total energy + Delta-G solvation = -3823.838077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46839 -41.42501 -39.65668 -37.96855 -35.97696 -35.24094 -33.91078 -32.98376 -31.86364 -31.29492 -29.51228 -29.49404 -27.35453 -24.95366 -23.71513 -23.26969 -22.35449 -22.07898 -21.46010 -20.60535 -19.09186 -18.81907 -18.37912 -17.93917 -17.38617 -17.01614 -16.33345 -16.19467 -15.96080 -15.82615 -15.46009 -15.08709 -14.83905 -14.56439 -14.48254 -14.21972 -14.11495 -13.92871 -13.79574 -13.65611 -13.45652 -13.14297 -13.01851 -12.88035 -12.64522 -12.24264 -12.17741 -12.07545 -11.87845 -11.80521 -11.63584 -11.45142 -11.42483 -11.39143 -10.80209 -10.32045 -10.15676 -9.75197 -8.97037 -8.32793 -6.37730 0.30971 0.59073 0.77183 1.01251 1.20714 1.34195 1.35513 1.46877 1.73086 1.76130 2.32703 2.98867 3.02303 3.38152 3.53768 3.82534 3.92239 3.96629 3.97501 4.07435 4.09566 4.16063 4.22687 4.31297 4.32863 4.38401 4.66655 4.68161 4.69158 4.69751 4.72151 4.88138 4.92533 4.94073 4.96582 5.21262 5.25127 5.25491 5.44809 5.45539 5.52090 5.59373 5.69641 5.71689 5.78363 5.92389 6.19085 6.22911 6.56991 6.68049 6.70202 7.26917 8.83550 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.001739 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.452938 B =16099.649621 C =16104.205307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.077 3.923 3 N -0.318 5.318 4 N -0.374 5.374 5 C 0.149 3.851 6 C 0.441 3.559 7 O -0.526 6.526 8 O -0.352 6.352 9 C 0.078 3.922 10 C -0.091 4.091 11 C -0.010 4.010 12 C -0.535 4.535 13 H 0.038 0.962 14 C 0.008 3.992 15 N -0.947 5.947 16 Si 0.947 3.053 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.249 1.249 20 C 0.082 3.918 21 C -0.215 4.215 22 C -0.008 4.008 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.126 4.126 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.188 0.812 32 H 0.153 0.847 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.267 0.733 40 H 0.216 0.784 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.448 -31.457 14.547 38.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 N -0.139 5.139 4 N -0.155 5.155 5 C 0.027 3.973 6 C 0.283 3.717 7 O -0.414 6.414 8 O -0.268 6.268 9 C 0.005 3.995 10 C -0.129 4.129 11 C -0.048 4.048 12 C -0.572 4.572 13 H 0.057 0.943 14 C -0.190 4.190 15 N -0.588 5.588 16 Si 0.770 3.230 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.172 1.172 20 C -0.063 4.063 21 C -0.226 4.226 22 C -0.009 4.009 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.150 4.150 26 C -0.141 4.141 27 C -0.144 4.144 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.205 0.795 32 H 0.171 0.829 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.233 0.767 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.450 -29.904 14.202 36.967 hybrid contribution -0.122 0.132 -0.988 1.004 sum -16.572 -29.771 13.215 36.546 Atomic orbital electron populations 1.20330 0.85389 1.04175 1.03447 1.22911 0.98004 0.89907 0.98288 1.77308 0.87362 1.23876 1.25319 1.48015 1.04756 1.05057 1.57701 1.21457 0.87252 0.92407 0.96201 1.24391 0.79873 0.80717 0.86687 1.90744 1.33783 1.69766 1.47080 1.86456 1.46889 1.44506 1.48928 1.23161 0.99939 0.90472 0.85960 1.21322 0.96155 0.95834 0.99564 1.19456 0.95956 0.94526 0.94858 1.21396 1.06762 1.16856 1.12235 0.94342 1.25961 0.98189 0.94772 1.00052 1.70046 1.32047 1.21732 1.34932 0.85706 0.79238 0.79822 0.78193 1.19203 1.20733 1.17213 1.23153 1.00157 0.83703 0.99247 1.18950 0.91975 0.93230 1.18473 1.18062 0.97119 0.89721 0.95999 1.21336 0.97560 0.96552 0.98478 1.21369 1.00159 0.93042 0.99329 1.21491 0.97213 1.00669 0.95591 1.21342 0.97707 0.95701 0.99354 1.21359 1.00830 0.93687 0.98521 0.90553 0.88500 0.90695 0.79524 0.82914 0.91352 0.91683 0.91615 0.91355 0.95759 0.96025 0.92364 0.76742 0.85532 0.84097 0.84225 0.84459 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.26 71.24 0.73 -0.58 16 2 C 0.08 1.78 7.23 43.37 0.31 2.09 16 3 N -0.32 -8.77 11.60 -46.85 -0.54 -9.32 16 4 N -0.37 -7.79 3.39 -350.95 -1.19 -8.98 16 5 C 0.15 2.26 7.09 85.63 0.61 2.87 16 6 C 0.44 11.63 7.99 71.23 0.57 12.20 16 7 O -0.53 -18.55 15.45 21.94 0.34 -18.21 16 8 O -0.35 -9.96 10.22 -51.35 -0.52 -10.48 16 9 C 0.08 2.59 5.47 71.98 0.39 2.98 16 10 C -0.09 -3.48 5.53 30.60 0.17 -3.31 16 11 C -0.01 -0.49 4.04 29.85 0.12 -0.36 16 12 C -0.53 -30.68 9.66 25.60 0.25 -30.44 16 13 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 14 C 0.01 0.44 5.47 84.65 0.46 0.90 16 15 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 16 Si 0.95 44.34 27.47 68.60 1.88 46.23 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 20 C 0.08 1.35 11.31 83.81 0.95 2.30 16 21 C -0.22 -4.19 5.58 -20.33 -0.11 -4.31 16 22 C -0.01 -0.13 5.61 -20.04 -0.11 -0.24 16 23 C -0.12 -1.71 8.56 22.48 0.19 -1.51 16 24 C -0.12 -1.37 10.04 22.24 0.22 -1.15 16 25 C -0.13 -1.43 10.04 22.31 0.22 -1.20 16 26 C -0.12 -1.49 10.03 22.24 0.22 -1.27 16 27 C -0.13 -1.87 9.70 22.47 0.22 -1.65 16 28 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.10 1.27 5.86 -2.39 -0.01 1.26 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.19 0.98 8.07 -2.38 -0.02 0.96 16 32 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 34 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 35 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 38 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.22 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.13 1.57 7.12 -2.91 -0.02 1.55 16 42 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.14 0.88 8.06 -2.91 -0.02 0.85 16 44 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.12 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -79.99 385.83 6.61 -73.38 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.93 Total: 8.97 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 5.42 Total: -22.68 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.43 Total: -77.21 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.19 Total: -28.69 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.23 kcal Total: -79.99 6.61 -73.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769328200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.058 kcal (2) G-P(sol) polarization free energy of solvation -79.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds