Wall clock time and date at job start Tue Mar 31 2020 14:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32913 * 126.01475 * 2 1 4 4 C 1.31818 * 109.79810 * 180.26485 * 3 2 1 5 5 C 1.47816 * 125.49977 * 180.02562 * 4 3 2 6 6 C 1.39609 * 120.15059 * 179.97438 * 5 4 3 7 7 C 1.37931 * 119.85643 * 180.02562 * 6 5 4 8 8 C 1.38378 * 120.14334 * 359.97438 * 7 6 5 9 9 C 1.38338 * 120.29889 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.92962 * 180.02562 * 9 8 7 11 11 C 1.37982 * 120.14408 * 359.76667 * 9 8 7 12 12 N 1.35884 * 109.00556 * 359.97438 * 4 3 2 13 13 H 0.96996 * 126.55756 * 179.97438 * 12 4 3 14 14 C 1.37945 * 126.00658 * 180.31031 * 2 1 3 15 15 C 1.46472 * 126.83116 * 359.71430 * 14 2 1 16 16 O 1.21628 * 119.99823 * 359.97438 * 15 14 2 17 17 O 1.34902 * 119.99542 * 180.02562 * 15 14 2 18 18 C 1.45197 * 116.99504 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47104 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.47394 * 179.97438 * 19 18 17 21 21 C 1.50693 * 109.47276 * 180.02562 * 20 19 18 22 22 H 1.08009 * 120.00106 * 0.02562 * 21 20 19 23 23 C 1.37873 * 120.00084 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00178 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46992 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47016 * 119.99811 * 25 23 21 28 28 H 1.48495 * 109.46957 * 239.99857 * 25 23 21 29 29 H 1.08996 * 109.47153 * 269.69085 * 1 2 3 30 30 H 1.08998 * 109.46380 * 29.68949 * 1 2 3 31 31 H 1.09003 * 109.47067 * 149.68670 * 1 2 3 32 32 H 1.07998 * 120.06868 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.92614 * 180.02562 * 7 6 5 34 34 H 1.08008 * 119.85031 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.46853 * 90.00051 * 10 9 8 36 36 H 1.08999 * 109.47225 * 210.00206 * 10 9 8 37 37 H 1.09005 * 109.47067 * 330.00410 * 10 9 8 38 38 H 1.07997 * 120.07489 * 180.25071 * 11 9 8 39 39 H 1.08999 * 109.47553 * 299.99853 * 18 17 15 40 40 H 1.08999 * 109.47660 * 60.00018 * 18 17 15 41 41 H 1.08994 * 109.46988 * 299.99994 * 19 18 17 42 42 H 1.09001 * 109.47109 * 59.99793 * 19 18 17 43 43 H 1.09004 * 109.46555 * 300.00088 * 20 19 18 44 44 H 1.09001 * 109.47152 * 59.99831 * 20 19 18 45 45 H 0.97002 * 120.00083 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2886 1.0751 0.0000 4 6 3.5543 0.7070 -0.0057 5 6 4.7146 1.6228 -0.0070 6 6 6.0129 1.1096 -0.0128 7 6 7.0912 1.9697 -0.0135 8 6 6.8882 3.3385 -0.0090 9 6 5.6044 3.8537 -0.0043 10 6 5.3930 5.3458 0.0000 11 6 4.5169 3.0044 -0.0090 12 7 3.6204 -0.6503 -0.0091 13 1 4.4267 -1.1894 -0.0138 14 6 2.3180 -1.1159 -0.0060 15 6 1.8858 -2.5154 -0.0078 16 8 0.6999 -2.7856 -0.0032 17 8 2.8031 -3.5045 -0.0134 18 6 2.3026 -4.8675 -0.0154 19 6 3.4810 -5.8434 -0.0225 20 6 2.9537 -7.2797 -0.0239 21 6 4.1142 -8.2409 -0.0303 22 1 5.1268 -7.8650 -0.0326 23 6 3.8836 -9.6002 -0.0321 24 7 2.6507 -10.0580 -0.0287 25 14 5.3223 -10.7918 -0.0392 26 1 6.5965 -10.0292 -0.0428 27 1 5.2611 -11.6489 1.1719 28 1 5.2528 -11.6443 -1.2531 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3632 0.8928 -0.5090 31 1 -0.3633 -0.8872 -0.5187 32 1 6.1726 0.0415 -0.0167 33 1 8.0961 1.5740 -0.0183 34 1 7.7360 4.0077 -0.0099 35 1 5.3393 5.7081 -1.0266 36 1 4.4622 5.5794 0.5169 37 1 6.2246 5.8291 0.5128 38 1 3.5151 3.4078 -0.0094 39 1 1.6980 -5.0339 0.8761 40 1 1.6921 -5.0292 -0.9038 41 1 4.0852 -5.6770 -0.9142 42 1 4.0919 -5.6820 0.8657 43 1 2.3496 -7.4458 0.8681 44 1 2.3425 -7.4415 -0.9119 45 1 2.4884 -11.0144 -0.0296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772099685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:48 Heat of formation + Delta-G solvation = -35.278335 kcal Electronic energy + Delta-G solvation = -25910.691061 eV Core-core repulsion = 22085.900985 eV Total energy + Delta-G solvation = -3824.790076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.44697 -40.01039 -39.48402 -36.55502 -34.14201 -33.92511 -33.15431 -32.45173 -31.73497 -30.41099 -28.02688 -27.29500 -26.75328 -24.58910 -23.40094 -22.56474 -21.74091 -20.84516 -20.47971 -19.77129 -18.69316 -17.22845 -16.74285 -16.56017 -16.25624 -15.96611 -15.55860 -15.51830 -15.26281 -14.50951 -14.21614 -14.13387 -13.94714 -13.56470 -13.37952 -13.22823 -13.07052 -12.65414 -12.46992 -12.42087 -12.26740 -12.19670 -11.94209 -11.77682 -11.50946 -11.03557 -10.85653 -10.72709 -10.65235 -10.48939 -10.41346 -10.33714 -9.81672 -9.74149 -9.57573 -9.20369 -9.18132 -8.43567 -8.31121 -6.07966 -4.11300 0.27342 0.93627 1.20732 2.36611 2.50193 2.81394 2.93814 3.26651 3.34244 3.38032 3.43319 3.71456 4.26805 4.39259 4.40201 4.56089 4.66086 4.70369 4.85521 4.89659 4.98349 5.18728 5.20855 5.28088 5.32438 5.38622 5.49759 5.52279 5.57026 5.61509 5.64216 5.73201 5.82237 5.92382 5.96366 6.00661 6.12967 6.25415 6.39765 6.45210 6.47735 6.72801 6.84875 6.89649 7.50774 7.54790 7.65213 7.77757 7.89904 8.30486 8.94915 9.53267 11.03403 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.002077 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.752063 B =13479.241149 C =15307.638743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.111 3.889 3 N -0.478 5.478 4 C 0.284 3.716 5 C -0.019 4.019 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.087 4.087 10 C -0.115 4.115 11 C -0.072 4.072 12 N -0.534 5.534 13 H 0.431 0.569 14 C -0.066 4.066 15 C 0.538 3.462 16 O -0.492 6.492 17 O -0.363 6.363 18 C 0.071 3.929 19 C -0.109 4.109 20 C 0.024 3.976 21 C -0.522 4.522 22 H 0.058 0.942 23 C 0.057 3.943 24 N -0.893 5.893 25 Si 0.895 3.105 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.139 0.861 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 30.578 0.002 31.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.026 4.026 3 N -0.198 5.198 4 C 0.024 3.976 5 C -0.021 4.021 6 C -0.131 4.131 7 C -0.130 4.130 8 C -0.126 4.126 9 C -0.087 4.087 10 C -0.172 4.172 11 C -0.092 4.092 12 N -0.139 5.139 13 H 0.272 0.728 14 C -0.180 4.180 15 C 0.381 3.619 16 O -0.380 6.380 17 O -0.279 6.279 18 C -0.002 4.002 19 C -0.147 4.147 20 C -0.013 4.013 21 C -0.560 4.560 22 H 0.076 0.924 23 C -0.145 4.145 24 N -0.532 5.532 25 Si 0.723 3.277 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.157 0.843 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.581 31.011 0.007 31.348 hybrid contribution 1.430 -2.137 0.006 2.571 sum 6.011 28.874 0.013 29.493 Atomic orbital electron populations 1.20363 0.85815 1.04048 1.03499 1.21370 0.96958 0.85807 0.98463 1.70202 0.98966 1.29723 1.20947 1.21320 0.93144 0.80488 1.02605 1.17584 0.88684 0.91811 1.04059 1.21118 0.91442 0.99992 1.00516 1.21020 0.98795 0.93254 0.99885 1.21225 0.96671 0.95347 0.99388 1.19909 0.92827 0.96363 0.99591 1.20814 1.02918 0.90790 1.02661 1.21107 0.99705 0.91026 0.97382 1.43326 1.08558 1.07569 1.54405 0.72820 1.20294 0.84276 0.92287 1.21178 1.19414 0.84506 0.84158 0.73790 1.90886 1.17297 1.83625 1.46205 1.86556 1.39764 1.17958 1.83672 1.23574 0.99179 0.74902 1.02528 1.21783 0.95502 0.95485 1.01884 1.19060 0.96946 0.87541 0.97800 1.21187 0.92821 0.90944 1.51095 0.92423 1.25033 0.95751 0.98530 0.95159 1.69972 1.19066 1.13716 1.50450 0.86489 0.82581 0.81007 0.77648 1.19713 1.20935 1.20939 0.90252 0.90576 0.89060 0.86016 0.85207 0.85592 0.90879 0.91136 0.91338 0.84314 0.91153 0.91163 0.92182 0.92186 0.96133 0.96129 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.88 36.01 0.36 -0.54 16 2 C 0.11 1.48 7.17 -82.23 -0.59 0.89 16 3 N -0.48 -6.23 10.79 -7.01 -0.08 -6.30 16 4 C 0.28 3.30 7.74 -154.89 -1.20 2.10 16 5 C -0.02 -0.19 5.87 -104.97 -0.62 -0.80 16 6 C -0.11 -0.87 9.69 -39.18 -0.38 -1.25 16 7 C -0.11 -0.74 10.03 -39.64 -0.40 -1.14 16 8 C -0.11 -0.68 9.69 -39.49 -0.38 -1.06 16 9 C -0.09 -0.61 5.87 -104.68 -0.61 -1.22 16 10 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 11 C -0.07 -0.63 9.34 -39.18 -0.37 -1.00 16 12 N -0.53 -6.12 6.11 -7.15 -0.04 -6.17 16 13 H 0.43 3.95 8.04 -40.82 -0.33 3.63 16 14 C -0.07 -0.91 7.17 -81.73 -0.59 -1.50 16 15 C 0.54 8.54 7.93 34.05 0.27 8.81 16 16 O -0.49 -8.63 14.64 -19.36 -0.28 -8.91 16 17 O -0.36 -5.96 10.23 -41.04 -0.42 -6.38 16 18 C 0.07 1.28 5.48 37.16 0.20 1.48 16 19 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 20 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 21 C -0.52 -14.54 9.11 -34.45 -0.31 -14.86 16 22 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 25 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.10 6.51 -51.93 -0.34 0.76 16 32 H 0.12 0.77 7.14 -52.49 -0.37 0.40 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 38 H 0.14 1.20 7.82 -52.49 -0.41 0.79 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -32.48 387.99 -10.38 -42.86 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.48 Total: -0.84 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -4.64 Total: -10.64 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.62 Total: -38.29 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.70 Total: -15.29 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.48 -10.38 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772099685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.586 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds