Wall clock time and date at job start Tue Mar 31 2020 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32913 * 126.01475 * 2 1 4 4 C 1.31818 * 109.79810 * 180.26485 * 3 2 1 5 5 C 1.47816 * 125.49977 * 180.02562 * 4 3 2 6 6 C 1.39609 * 120.15059 * 179.97438 * 5 4 3 7 7 C 1.37931 * 119.85643 * 180.02562 * 6 5 4 8 8 C 1.38378 * 120.14334 * 359.97438 * 7 6 5 9 9 C 1.38338 * 120.29889 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.92962 * 180.02562 * 9 8 7 11 11 C 1.37982 * 120.14408 * 359.76667 * 9 8 7 12 12 N 1.35884 * 109.00556 * 359.97438 * 4 3 2 13 13 H 0.96996 * 126.55756 * 179.97438 * 12 4 3 14 14 C 1.37945 * 126.00658 * 180.31031 * 2 1 3 15 15 C 1.46472 * 126.83116 * 359.71430 * 14 2 1 16 16 O 1.21628 * 119.99823 * 359.97438 * 15 14 2 17 17 O 1.34902 * 119.99542 * 180.02562 * 15 14 2 18 18 C 1.45197 * 116.99504 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47104 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.47394 * 179.97438 * 19 18 17 21 21 C 1.50693 * 109.47276 * 180.02562 * 20 19 18 22 22 H 1.08009 * 120.00106 * 0.02562 * 21 20 19 23 23 C 1.37873 * 120.00084 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00178 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46992 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47016 * 119.99811 * 25 23 21 28 28 H 1.48495 * 109.46957 * 239.99857 * 25 23 21 29 29 H 1.08996 * 109.47153 * 269.69085 * 1 2 3 30 30 H 1.08998 * 109.46380 * 29.68949 * 1 2 3 31 31 H 1.09003 * 109.47067 * 149.68670 * 1 2 3 32 32 H 1.07998 * 120.06868 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.92614 * 180.02562 * 7 6 5 34 34 H 1.08008 * 119.85031 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.46853 * 90.00051 * 10 9 8 36 36 H 1.08999 * 109.47225 * 210.00206 * 10 9 8 37 37 H 1.09005 * 109.47067 * 330.00410 * 10 9 8 38 38 H 1.07997 * 120.07489 * 180.25071 * 11 9 8 39 39 H 1.08999 * 109.47553 * 299.99853 * 18 17 15 40 40 H 1.08999 * 109.47660 * 60.00018 * 18 17 15 41 41 H 1.08994 * 109.46988 * 299.99994 * 19 18 17 42 42 H 1.09001 * 109.47109 * 59.99793 * 19 18 17 43 43 H 1.09004 * 109.46555 * 300.00088 * 20 19 18 44 44 H 1.09001 * 109.47152 * 59.99831 * 20 19 18 45 45 H 0.97002 * 120.00083 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2886 1.0751 0.0000 4 6 3.5543 0.7070 -0.0057 5 6 4.7146 1.6228 -0.0070 6 6 6.0129 1.1096 -0.0128 7 6 7.0912 1.9697 -0.0135 8 6 6.8882 3.3385 -0.0090 9 6 5.6044 3.8537 -0.0043 10 6 5.3930 5.3458 0.0000 11 6 4.5169 3.0044 -0.0090 12 7 3.6204 -0.6503 -0.0091 13 1 4.4267 -1.1894 -0.0138 14 6 2.3180 -1.1159 -0.0060 15 6 1.8858 -2.5154 -0.0078 16 8 0.6999 -2.7856 -0.0032 17 8 2.8031 -3.5045 -0.0134 18 6 2.3026 -4.8675 -0.0154 19 6 3.4810 -5.8434 -0.0225 20 6 2.9537 -7.2797 -0.0239 21 6 4.1142 -8.2409 -0.0303 22 1 5.1268 -7.8650 -0.0326 23 6 3.8836 -9.6002 -0.0321 24 7 2.6507 -10.0580 -0.0287 25 14 5.3223 -10.7918 -0.0392 26 1 6.5965 -10.0292 -0.0428 27 1 5.2611 -11.6489 1.1719 28 1 5.2528 -11.6443 -1.2531 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3632 0.8928 -0.5090 31 1 -0.3633 -0.8872 -0.5187 32 1 6.1726 0.0415 -0.0167 33 1 8.0961 1.5740 -0.0183 34 1 7.7360 4.0077 -0.0099 35 1 5.3393 5.7081 -1.0266 36 1 4.4622 5.5794 0.5169 37 1 6.2246 5.8291 0.5128 38 1 3.5151 3.4078 -0.0094 39 1 1.6980 -5.0339 0.8761 40 1 1.6921 -5.0292 -0.9038 41 1 4.0852 -5.6770 -0.9142 42 1 4.0919 -5.6820 0.8657 43 1 2.3496 -7.4458 0.8681 44 1 2.3425 -7.4415 -0.9119 45 1 2.4884 -11.0144 -0.0296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772099685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:47 Heat of formation + Delta-G solvation = -51.428838 kcal Electronic energy + Delta-G solvation = -25911.391399 eV Core-core repulsion = 22085.900985 eV Total energy + Delta-G solvation = -3825.490415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.40856 -41.26609 -40.09487 -37.92411 -35.99019 -34.80065 -34.01052 -33.60586 -33.09059 -31.22598 -29.39013 -28.36233 -27.63466 -25.75760 -24.85281 -23.39387 -22.76883 -22.22381 -21.57278 -20.80220 -19.76543 -18.68075 -18.07655 -17.86743 -17.43121 -16.92739 -16.60223 -16.51657 -16.27653 -15.93970 -15.53755 -14.90971 -14.74424 -14.62482 -14.18529 -14.10809 -14.05953 -13.92784 -13.85319 -13.81102 -13.31061 -13.01486 -12.98266 -12.87840 -12.54082 -12.43456 -12.30544 -12.15440 -12.10387 -11.94554 -11.64637 -11.48023 -11.38062 -11.33489 -11.21878 -10.59707 -10.49314 -9.72462 -9.16245 -8.23555 -6.35071 -0.55436 0.30292 0.40239 1.26960 1.40338 1.40672 1.53866 1.56440 1.70597 1.84742 2.39632 2.82424 2.88240 3.10523 3.47093 3.67187 3.81560 3.91748 3.96132 3.99705 4.00082 4.17014 4.31005 4.36484 4.38557 4.49636 4.67950 4.73174 4.75787 4.77932 4.86937 4.87904 4.88741 4.91171 5.03173 5.05648 5.21540 5.29914 5.33174 5.42496 5.45896 5.48743 5.61085 5.61338 5.78044 5.94262 6.02329 6.16590 6.45434 6.59526 6.80885 7.34547 8.88697 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.002077 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.752063 B =13479.241149 C =15307.638743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.111 3.889 3 N -0.498 5.498 4 C 0.300 3.700 5 C -0.046 4.046 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.103 4.103 9 C -0.092 4.092 10 C -0.115 4.115 11 C -0.083 4.083 12 N -0.529 5.529 13 H 0.440 0.560 14 C -0.092 4.092 15 C 0.540 3.460 16 O -0.514 6.514 17 O -0.358 6.358 18 C 0.080 3.920 19 C -0.093 4.093 20 C 0.025 3.975 21 C -0.542 4.542 22 H 0.065 0.935 23 C -0.002 4.002 24 N -0.932 5.932 25 Si 0.969 3.031 26 H -0.260 1.260 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.067 0.933 43 H -0.002 1.002 44 H -0.002 1.002 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.069 32.274 0.028 33.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 N -0.219 5.219 4 C 0.040 3.960 5 C -0.048 4.048 6 C -0.135 4.135 7 C -0.132 4.132 8 C -0.121 4.121 9 C -0.092 4.092 10 C -0.171 4.171 11 C -0.103 4.103 12 N -0.134 5.134 13 H 0.283 0.717 14 C -0.206 4.206 15 C 0.386 3.614 16 O -0.404 6.404 17 O -0.275 6.275 18 C 0.007 3.993 19 C -0.131 4.131 20 C -0.012 4.012 21 C -0.580 4.580 22 H 0.083 0.917 23 C -0.199 4.199 24 N -0.572 5.572 25 Si 0.793 3.207 26 H -0.184 1.184 27 H -0.204 1.204 28 H -0.204 1.204 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.150 0.850 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.314 32.717 0.032 33.524 hybrid contribution 0.647 -2.479 -0.003 2.562 sum 7.961 30.238 0.030 31.268 Atomic orbital electron populations 1.20400 0.84755 1.04292 1.04093 1.21760 0.97887 0.85765 0.97239 1.70249 0.99638 1.29645 1.22329 1.21794 0.93473 0.80683 1.00084 1.17713 0.88656 0.91878 1.06567 1.21346 0.91066 1.01013 1.00042 1.21365 0.99504 0.93372 0.98966 1.21616 0.97182 0.95778 0.97525 1.20195 0.92695 0.97378 0.98951 1.20864 1.03607 0.89303 1.03346 1.21188 1.00153 0.91042 0.97921 1.43253 1.08186 1.07637 1.54337 0.71722 1.20044 0.85480 0.91154 1.23909 1.19654 0.84128 0.84574 0.73071 1.90872 1.18044 1.83963 1.47483 1.86526 1.39768 1.17258 1.83966 1.23232 0.98009 0.75673 1.02360 1.21466 0.96049 0.92981 1.02571 1.18944 0.96012 0.90646 0.95626 1.21636 0.93730 0.91834 1.50834 0.91672 1.26006 0.98653 1.00654 0.94631 1.70103 1.21420 1.14287 1.51421 0.85344 0.79238 0.78390 0.77737 1.18364 1.20430 1.20440 0.89385 0.88926 0.90130 0.84855 0.82835 0.82941 0.90163 0.91164 0.89794 0.85019 0.91417 0.91415 0.91416 0.91429 0.98349 0.98340 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 9.88 71.24 0.70 -1.04 16 2 C 0.11 2.97 7.17 42.33 0.30 3.27 16 3 N -0.50 -12.92 10.79 -176.10 -1.90 -14.82 16 4 C 0.30 6.86 7.74 136.59 1.06 7.91 16 5 C -0.05 -0.85 5.87 -20.09 -0.12 -0.96 16 6 C -0.11 -1.61 9.69 22.53 0.22 -1.39 16 7 C -0.11 -1.20 10.03 22.23 0.22 -0.97 16 8 C -0.10 -0.99 9.69 22.33 0.22 -0.78 16 9 C -0.09 -1.11 5.87 -19.90 -0.12 -1.23 16 10 C -0.11 -0.82 10.01 71.24 0.71 -0.11 16 11 C -0.08 -1.38 9.34 22.53 0.21 -1.17 16 12 N -0.53 -11.92 6.11 -176.52 -1.08 -13.00 16 13 H 0.44 7.76 8.04 -92.71 -0.75 7.02 16 14 C -0.09 -2.56 7.17 40.20 0.29 -2.27 16 15 C 0.54 17.35 7.93 69.97 0.55 17.90 16 16 O -0.51 -18.42 14.64 19.42 0.28 -18.13 16 17 O -0.36 -11.73 10.23 -58.17 -0.60 -12.32 16 18 C 0.08 2.93 5.48 71.98 0.39 3.32 16 19 C -0.09 -3.76 5.53 30.60 0.17 -3.59 16 20 C 0.02 1.29 4.97 29.85 0.15 1.44 16 21 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 22 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 23 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 24 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 25 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 26 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.99 6.51 -2.39 -0.02 1.97 16 32 H 0.13 1.45 7.14 -2.91 -0.02 1.43 16 33 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.15 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 37 H 0.08 0.35 8.08 -2.38 -0.02 0.33 16 38 H 0.13 2.28 7.82 -2.91 -0.02 2.25 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 42 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 44 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.03 387.99 4.95 -65.09 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.26 Total: 12.94 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 5.66 Total: -9.37 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.69 Total: -83.86 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.31 Total: -30.45 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.03 4.95 -65.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772099685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.660 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds