Wall clock time and date at job start Tue Mar 31 2020 15:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30168 * 126.80308 * 2 1 4 4 O 1.20924 * 111.60908 * 180.02562 * 3 2 1 5 5 C 1.34046 * 111.56212 * 359.76224 * 4 3 2 6 6 C 1.50700 * 126.77358 * 180.28839 * 5 4 3 7 7 C 1.35449 * 106.44623 * 0.38129 * 5 4 3 8 8 C 1.50703 * 128.00526 * 179.91149 * 7 5 4 9 9 C 1.52997 * 109.46793 * 269.68064 * 8 7 5 10 10 N 1.46507 * 109.46750 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99610 * 179.97438 * 10 9 8 12 12 O 1.21276 * 120.00545 * 359.72652 * 11 10 9 13 13 C 1.50703 * 119.99652 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47273 * 179.72486 * 13 11 10 15 15 C 1.37635 * 120.12909 * 265.00193 * 14 13 11 16 16 C 1.38617 * 120.24962 * 179.97438 * 15 14 13 17 17 C 1.38649 * 120.49997 * 0.02562 * 16 15 14 18 18 C 1.37601 * 120.25143 * 0.02726 * 17 16 15 19 19 C 1.40698 * 120.12633 * 84.72457 * 14 13 11 20 20 C 1.41399 * 120.24451 * 359.97438 * 19 14 13 21 21 H 1.07993 * 119.99648 * 333.90532 * 20 19 14 22 22 C 1.39939 * 119.99757 * 153.89814 * 20 19 14 23 23 N 1.30831 * 120.00497 * 343.71316 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 163.70908 * 22 20 19 25 25 H 1.48505 * 109.46970 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46930 * 120.00087 * 24 22 20 27 27 H 1.48502 * 109.47271 * 240.00135 * 24 22 20 28 28 H 1.09000 * 109.46607 * 269.96675 * 1 2 3 29 29 H 1.08997 * 109.47570 * 29.96966 * 1 2 3 30 30 H 1.09003 * 109.47311 * 149.97281 * 1 2 3 31 31 H 1.08995 * 109.46946 * 270.10918 * 6 5 4 32 32 H 1.08995 * 109.47034 * 30.11680 * 6 5 4 33 33 H 1.09008 * 109.46580 * 150.10834 * 6 5 4 34 34 H 1.09005 * 109.46942 * 149.68009 * 8 7 5 35 35 H 1.08999 * 109.46940 * 29.67947 * 8 7 5 36 36 H 1.08996 * 109.47507 * 60.00073 * 9 8 7 37 37 H 1.08999 * 109.47283 * 299.99673 * 9 8 7 38 38 H 0.96993 * 120.00102 * 0.02562 * 10 9 8 39 39 H 1.08999 * 109.47364 * 299.72379 * 13 11 10 40 40 H 1.08999 * 109.47159 * 59.72827 * 13 11 10 41 41 H 1.08004 * 119.87543 * 0.02562 * 15 14 13 42 42 H 1.08005 * 119.74894 * 180.02562 * 16 15 14 43 43 H 1.08007 * 119.87542 * 179.97438 * 17 16 15 44 44 H 1.07998 * 120.12911 * 179.97438 * 18 17 16 45 45 H 0.96997 * 120.00109 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3695 0.0113 7 6 2.3540 -1.1321 -0.0006 8 6 1.9591 -2.5865 -0.0001 9 6 1.8243 -3.0787 -1.4425 10 7 1.4398 -4.4924 -1.4420 11 6 1.2617 -5.1427 -2.6090 12 8 1.4149 -4.5563 -3.6595 13 6 0.8668 -6.5970 -2.6085 14 6 0.7267 -7.0800 -4.0291 15 6 -0.5074 -7.0851 -4.6386 16 6 -0.6390 -7.5283 -5.9453 17 6 0.4679 -7.9715 -6.6530 18 6 1.7112 -7.9763 -6.0634 19 6 1.8579 -7.5220 -4.7395 20 6 3.1317 -7.5153 -4.1258 21 1 3.3415 -6.8222 -3.3247 22 6 4.1206 -8.4070 -4.5566 23 7 3.7943 -9.4440 -5.2845 24 14 5.9065 -8.1164 -4.0926 25 1 6.0102 -6.8839 -3.2706 26 1 6.4099 -9.2751 -3.3121 27 1 6.7191 -7.9594 -5.3256 28 1 -0.3632 -0.0006 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8898 -0.5143 31 1 5.2202 -1.5550 -1.0146 32 1 5.6636 -0.7851 0.5278 33 1 4.7627 -2.3203 0.5260 34 1 1.0054 -2.7038 0.5145 35 1 2.7232 -3.1702 0.5131 36 1 2.7779 -2.9613 -1.9571 37 1 1.0602 -2.4950 -1.9557 38 1 1.3128 -4.9602 -0.6018 39 1 1.6335 -7.1816 -2.1000 40 1 -0.0842 -6.7151 -2.0892 41 1 -1.3763 -6.7416 -4.0969 42 1 -1.6112 -7.5284 -6.4158 43 1 0.3537 -8.3151 -7.6706 44 1 2.5720 -8.3223 -6.6163 45 1 4.4797 -10.0622 -5.5827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776902810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:54 Heat of formation + Delta-G solvation = 22.293909 kcal Electronic energy + Delta-G solvation = -27047.825819 eV Core-core repulsion = 23225.532262 eV Total energy + Delta-G solvation = -3822.293557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.11032 -39.25394 -37.41360 -36.33053 -34.38405 -33.65619 -33.59988 -31.77070 -30.33040 -29.42450 -28.88268 -27.76579 -26.67045 -25.04396 -23.72327 -21.52325 -20.91955 -20.58253 -20.29389 -19.26370 -17.86065 -17.18257 -17.09591 -16.28080 -15.80851 -15.57908 -15.25364 -14.57047 -14.49147 -14.22920 -13.74531 -13.67331 -13.52964 -13.40538 -13.18443 -13.04659 -12.93185 -12.80865 -12.57266 -12.44670 -12.19789 -11.70662 -11.68818 -11.55420 -11.16696 -11.09554 -10.97893 -10.92804 -10.66416 -10.37705 -10.03455 -9.46605 -9.37368 -9.35604 -9.16441 -9.12315 -8.73665 -7.28956 -7.27093 -6.71956 -4.32584 1.25067 1.96763 2.78751 2.88830 2.99587 3.07439 3.11836 3.27701 3.35463 3.63921 3.94171 3.99269 4.21572 4.51688 4.67812 4.78536 4.87086 5.00033 5.11415 5.15220 5.22953 5.28098 5.38235 5.44601 5.50136 5.53089 5.72175 5.79508 5.88706 5.89822 5.99135 6.06179 6.19078 6.30529 6.44664 6.53138 6.75367 6.82361 7.10440 7.31828 7.44479 7.66204 7.88983 7.97051 8.08832 8.09760 8.15323 8.33552 8.66919 8.87104 8.93726 9.03746 10.22255 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003070 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.035209 B = 9118.020011 C =10784.529528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.024 4.024 6 C -0.077 4.077 7 C -0.198 4.198 8 C -0.051 4.051 9 C 0.127 3.873 10 N -0.747 5.747 11 C 0.514 3.486 12 O -0.519 6.519 13 C -0.070 4.070 14 C -0.180 4.180 15 C -0.082 4.082 16 C -0.239 4.239 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.128 3.872 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.076 3.924 23 N -0.796 5.796 24 Si 0.902 3.098 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.272 1.272 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.396 0.604 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 10.847 13.952 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.087 4.087 6 C -0.134 4.134 7 C -0.202 4.202 8 C -0.089 4.089 9 C 0.003 3.997 10 N -0.402 5.402 11 C 0.302 3.698 12 O -0.393 6.393 13 C -0.110 4.110 14 C -0.182 4.182 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.126 3.874 20 C -0.486 4.486 21 H 0.092 0.908 22 C -0.141 4.141 23 N -0.422 5.422 24 Si 0.727 3.273 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.197 1.197 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.229 0.771 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.425 12.394 13.039 17.994 hybrid contribution 0.702 -0.868 0.515 1.229 sum 0.278 11.526 13.554 17.794 Atomic orbital electron populations 1.20191 0.85938 1.04080 1.03289 1.23465 0.98951 0.88446 1.02446 1.73833 0.89295 1.23974 1.20422 1.84801 1.21634 1.22533 1.67946 1.24310 0.98316 0.83781 1.02310 1.20396 0.89902 0.98537 1.04588 1.20726 0.91667 0.97071 1.10750 1.20060 1.02823 0.88660 0.97330 1.21137 1.01077 0.82441 0.95091 1.46123 1.73737 1.11122 1.09225 1.21254 0.75997 0.89791 0.82791 1.90689 1.48712 1.68647 1.31239 1.20267 1.01669 0.90932 0.98149 1.19056 0.93468 1.11947 0.93758 1.20303 0.95395 0.99510 0.94818 1.20309 0.96975 1.12442 0.96144 1.20679 0.93888 1.00344 0.97682 1.21302 0.96005 1.05127 0.95428 1.17346 0.91534 0.87803 0.90716 1.19493 0.95705 1.16302 1.17087 0.90756 1.25878 1.01017 0.93692 0.93487 1.69830 1.35352 1.08930 1.28039 0.86358 0.82328 0.79287 0.79311 1.18550 1.20052 1.19741 0.90185 0.90479 0.89781 0.88982 0.89823 0.88872 0.89849 0.89810 0.91695 0.91889 0.77077 0.88557 0.90619 0.89781 0.89685 0.89602 0.86529 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.39 36.01 0.37 -0.28 16 2 C 0.03 0.29 7.33 -82.10 -0.60 -0.31 16 3 N -0.37 -4.78 12.07 33.42 0.40 -4.38 16 4 O 0.10 1.14 11.20 17.16 0.19 1.33 16 5 C -0.02 -0.24 7.49 -35.30 -0.26 -0.50 16 6 C -0.08 -0.52 10.30 36.01 0.37 -0.15 16 7 C -0.20 -2.04 5.58 -104.42 -0.58 -2.62 16 8 C -0.05 -0.44 5.66 -27.88 -0.16 -0.60 16 9 C 0.13 1.56 5.66 -4.04 -0.02 1.54 16 10 N -0.75 -9.98 5.56 -60.29 -0.33 -10.31 16 11 C 0.51 9.68 7.44 -10.98 -0.08 9.60 16 12 O -0.52 -12.36 16.03 5.56 0.09 -12.27 16 13 C -0.07 -1.34 5.18 -29.03 -0.15 -1.49 16 14 C -0.18 -4.31 4.43 -103.91 -0.46 -4.77 16 15 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 16 C -0.24 -5.59 10.05 -39.29 -0.39 -5.99 16 17 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 18 C -0.16 -4.27 8.69 -38.87 -0.34 -4.61 16 19 C 0.13 3.42 5.56 -106.82 -0.59 2.82 16 20 C -0.46 -11.88 8.14 -37.74 -0.31 -12.18 16 21 H 0.07 1.88 6.67 -52.49 -0.35 1.53 16 22 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 23 N -0.80 -20.42 10.96 55.55 0.61 -19.81 16 24 Si 0.90 18.57 29.59 -169.99 -5.03 13.54 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.52 7.44 -51.92 -0.39 0.13 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.60 7.44 -51.93 -0.39 0.22 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.40 3.86 8.47 -40.82 -0.35 3.52 16 39 H 0.10 1.78 7.08 -51.93 -0.37 1.41 16 40 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 41 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 45 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -33.02 382.41 -8.75 -41.77 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.36 Total: 7.38 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -4.08 Total: -23.01 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.68 Total: -34.50 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.28 Total: -10.94 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.02 -8.75 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776902810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.066 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds