Wall clock time and date at job start Tue Mar 31 2020 15:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30168 * 126.80308 * 2 1 4 4 O 1.20924 * 111.60908 * 180.02562 * 3 2 1 5 5 C 1.34046 * 111.56212 * 359.76224 * 4 3 2 6 6 C 1.50700 * 126.77358 * 180.28839 * 5 4 3 7 7 C 1.35449 * 106.44623 * 0.38129 * 5 4 3 8 8 C 1.50703 * 128.00526 * 179.91149 * 7 5 4 9 9 C 1.52997 * 109.46793 * 269.68064 * 8 7 5 10 10 N 1.46507 * 109.46750 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99610 * 179.97438 * 10 9 8 12 12 O 1.21276 * 120.00545 * 359.72652 * 11 10 9 13 13 C 1.50703 * 119.99652 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47273 * 179.72486 * 13 11 10 15 15 C 1.37635 * 120.12909 * 265.00193 * 14 13 11 16 16 C 1.38617 * 120.24962 * 179.97438 * 15 14 13 17 17 C 1.38649 * 120.49997 * 0.02562 * 16 15 14 18 18 C 1.37601 * 120.25143 * 0.02726 * 17 16 15 19 19 C 1.40698 * 120.12633 * 84.72457 * 14 13 11 20 20 C 1.41399 * 120.24451 * 359.97438 * 19 14 13 21 21 H 1.07993 * 119.99648 * 333.90532 * 20 19 14 22 22 C 1.39939 * 119.99757 * 153.89814 * 20 19 14 23 23 N 1.30831 * 120.00497 * 343.71316 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 163.70908 * 22 20 19 25 25 H 1.48505 * 109.46970 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46930 * 120.00087 * 24 22 20 27 27 H 1.48502 * 109.47271 * 240.00135 * 24 22 20 28 28 H 1.09000 * 109.46607 * 269.96675 * 1 2 3 29 29 H 1.08997 * 109.47570 * 29.96966 * 1 2 3 30 30 H 1.09003 * 109.47311 * 149.97281 * 1 2 3 31 31 H 1.08995 * 109.46946 * 270.10918 * 6 5 4 32 32 H 1.08995 * 109.47034 * 30.11680 * 6 5 4 33 33 H 1.09008 * 109.46580 * 150.10834 * 6 5 4 34 34 H 1.09005 * 109.46942 * 149.68009 * 8 7 5 35 35 H 1.08999 * 109.46940 * 29.67947 * 8 7 5 36 36 H 1.08996 * 109.47507 * 60.00073 * 9 8 7 37 37 H 1.08999 * 109.47283 * 299.99673 * 9 8 7 38 38 H 0.96993 * 120.00102 * 0.02562 * 10 9 8 39 39 H 1.08999 * 109.47364 * 299.72379 * 13 11 10 40 40 H 1.08999 * 109.47159 * 59.72827 * 13 11 10 41 41 H 1.08004 * 119.87543 * 0.02562 * 15 14 13 42 42 H 1.08005 * 119.74894 * 180.02562 * 16 15 14 43 43 H 1.08007 * 119.87542 * 179.97438 * 17 16 15 44 44 H 1.07998 * 120.12911 * 179.97438 * 18 17 16 45 45 H 0.96997 * 120.00109 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3695 0.0113 7 6 2.3540 -1.1321 -0.0006 8 6 1.9591 -2.5865 -0.0001 9 6 1.8243 -3.0787 -1.4425 10 7 1.4398 -4.4924 -1.4420 11 6 1.2617 -5.1427 -2.6090 12 8 1.4149 -4.5563 -3.6595 13 6 0.8668 -6.5970 -2.6085 14 6 0.7267 -7.0800 -4.0291 15 6 -0.5074 -7.0851 -4.6386 16 6 -0.6390 -7.5283 -5.9453 17 6 0.4679 -7.9715 -6.6530 18 6 1.7112 -7.9763 -6.0634 19 6 1.8579 -7.5220 -4.7395 20 6 3.1317 -7.5153 -4.1258 21 1 3.3415 -6.8222 -3.3247 22 6 4.1206 -8.4070 -4.5566 23 7 3.7943 -9.4440 -5.2845 24 14 5.9065 -8.1164 -4.0926 25 1 6.0102 -6.8839 -3.2706 26 1 6.4099 -9.2751 -3.3121 27 1 6.7191 -7.9594 -5.3256 28 1 -0.3632 -0.0006 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8898 -0.5143 31 1 5.2202 -1.5550 -1.0146 32 1 5.6636 -0.7851 0.5278 33 1 4.7627 -2.3203 0.5260 34 1 1.0054 -2.7038 0.5145 35 1 2.7232 -3.1702 0.5131 36 1 2.7779 -2.9613 -1.9571 37 1 1.0602 -2.4950 -1.9557 38 1 1.3128 -4.9602 -0.6018 39 1 1.6335 -7.1816 -2.1000 40 1 -0.0842 -6.7151 -2.0892 41 1 -1.3763 -6.7416 -4.0969 42 1 -1.6112 -7.5284 -6.4158 43 1 0.3537 -8.3151 -7.6706 44 1 2.5720 -8.3223 -6.6163 45 1 4.4797 -10.0622 -5.5827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776902810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:53 Heat of formation + Delta-G solvation = 2.873836 kcal Electronic energy + Delta-G solvation = -27048.667936 eV Core-core repulsion = 23225.532262 eV Total energy + Delta-G solvation = -3823.135674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.93325 -40.73783 -39.13155 -37.31223 -35.47423 -35.42006 -34.50853 -33.42661 -31.41431 -31.21142 -29.62184 -28.77804 -27.99604 -26.83569 -24.79052 -22.79969 -22.36768 -22.09530 -21.16310 -20.78326 -19.04361 -18.71008 -18.03189 -17.58520 -17.31248 -16.91621 -16.55079 -16.14665 -15.74415 -15.40024 -15.17466 -14.86465 -14.57190 -14.36209 -14.32368 -14.17842 -13.95096 -13.84888 -13.53358 -13.43283 -13.33986 -13.16888 -12.99872 -12.87882 -12.72311 -12.68096 -12.46922 -12.39368 -12.08001 -11.81950 -11.29308 -11.18042 -11.00500 -10.86362 -10.72773 -10.10774 -9.98321 -9.20054 -9.13387 -8.56428 -6.26319 0.46373 1.01409 1.13910 1.18665 1.38587 1.52032 1.55012 1.89564 2.15759 2.22473 2.45396 2.81920 3.23841 3.50872 3.77735 3.82286 4.03269 4.07523 4.21331 4.29636 4.38917 4.43972 4.48391 4.54868 4.64177 4.65977 4.66862 4.71312 4.73797 4.82155 4.85465 4.88882 5.00508 5.08079 5.11888 5.15119 5.23510 5.32008 5.39401 5.57345 5.58672 5.80888 6.06622 6.20065 6.23946 6.44757 6.72270 6.79771 7.02424 7.14594 7.28327 7.51570 8.40192 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003070 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.035209 B = 9118.020011 C =10784.529528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.018 3.982 3 N -0.402 5.402 4 O 0.078 5.922 5 C -0.023 4.023 6 C -0.078 4.078 7 C -0.210 4.210 8 C -0.036 4.036 9 C 0.130 3.870 10 N -0.721 5.721 11 C 0.516 3.484 12 O -0.578 6.578 13 C -0.070 4.070 14 C -0.186 4.186 15 C -0.093 4.093 16 C -0.245 4.245 17 C -0.119 4.119 18 C -0.196 4.196 19 C 0.095 3.905 20 C -0.481 4.481 21 H 0.075 0.925 22 C 0.034 3.966 23 N -0.828 5.828 24 Si 0.972 3.028 25 H -0.257 1.257 26 H -0.261 1.261 27 H -0.273 1.273 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.418 0.582 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 10.809 16.477 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 N -0.112 5.112 4 O 0.017 5.983 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.215 4.215 8 C -0.074 4.074 9 C 0.006 3.994 10 N -0.375 5.375 11 C 0.304 3.696 12 O -0.457 6.457 13 C -0.109 4.109 14 C -0.188 4.188 15 C -0.111 4.111 16 C -0.264 4.264 17 C -0.138 4.138 18 C -0.215 4.215 19 C 0.093 3.907 20 C -0.510 4.510 21 H 0.093 0.907 22 C -0.180 4.180 23 N -0.455 5.455 24 Si 0.793 3.207 25 H -0.181 1.181 26 H -0.185 1.185 27 H -0.198 1.198 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.255 0.745 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.743 12.347 15.630 19.932 hybrid contribution 0.701 -0.835 -0.278 1.125 sum -0.042 11.511 15.353 19.189 Atomic orbital electron populations 1.20310 0.84283 1.04353 1.04571 1.24017 1.00229 0.88524 1.01315 1.73826 0.89849 1.25201 1.22339 1.84760 1.21485 1.23662 1.68442 1.24956 0.99678 0.83230 1.00765 1.20584 0.88830 0.99124 1.04970 1.20942 0.91594 0.97600 1.11361 1.19999 1.04876 0.87664 0.94825 1.21141 0.99477 0.81344 0.97474 1.45805 1.71533 1.11525 1.08672 1.21154 0.75509 0.89685 0.83261 1.90675 1.51668 1.69739 1.33583 1.20296 1.03951 0.90998 0.95662 1.19577 0.92960 1.10286 0.95969 1.20759 0.96378 0.98896 0.95047 1.20719 0.97739 1.11347 0.96560 1.20942 0.93683 1.00405 0.98725 1.21315 0.96372 1.07587 0.96246 1.17763 0.93050 0.88844 0.91086 1.19660 0.96494 1.17004 1.17886 0.90740 1.26700 1.05044 0.93006 0.93212 1.69898 1.36897 1.09727 1.28976 0.85309 0.76733 0.79618 0.78999 1.18072 1.18504 1.19835 0.88307 0.90748 0.88942 0.89089 0.88206 0.87091 0.87594 0.87506 0.93679 0.93355 0.74475 0.88166 0.86670 0.86437 0.86836 0.87905 0.88646 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.39 71.24 0.74 -0.45 16 2 C 0.02 0.39 7.33 43.58 0.32 0.71 16 3 N -0.40 -10.38 12.07 -49.55 -0.60 -10.98 16 4 O 0.08 1.84 11.20 71.57 0.80 2.65 16 5 C -0.02 -0.43 7.49 25.04 0.19 -0.24 16 6 C -0.08 -0.90 10.30 71.24 0.73 -0.16 16 7 C -0.21 -3.95 5.58 -19.73 -0.11 -4.06 16 8 C -0.04 -0.51 5.66 29.85 0.17 -0.34 16 9 C 0.13 2.96 5.66 86.38 0.49 3.44 16 10 N -0.72 -17.32 5.56 -463.06 -2.57 -19.90 16 11 C 0.52 18.68 7.44 87.66 0.65 19.33 16 12 O -0.58 -27.62 16.03 -3.02 -0.05 -27.67 16 13 C -0.07 -2.50 5.18 29.10 0.15 -2.35 16 14 C -0.19 -8.78 4.43 -19.41 -0.09 -8.87 16 15 C -0.09 -4.13 9.66 22.22 0.21 -3.92 16 16 C -0.24 -11.17 10.05 22.46 0.23 -10.95 16 17 C -0.12 -5.93 10.02 22.22 0.22 -5.70 16 18 C -0.20 -10.88 8.69 22.73 0.20 -10.68 16 19 C 0.09 5.16 5.56 -21.29 -0.12 5.04 16 20 C -0.48 -25.50 8.14 23.46 0.19 -25.31 16 21 H 0.07 3.80 6.67 -2.91 -0.02 3.78 16 22 C 0.03 1.74 5.16 85.25 0.44 2.18 16 23 N -0.83 -43.70 10.96 21.83 0.24 -43.46 16 24 Si 0.97 38.15 29.59 68.60 2.03 40.18 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 27 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 0.88 7.44 -2.38 -0.02 0.86 16 34 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.11 1.07 7.44 -2.39 -0.02 1.05 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 6.46 8.47 -92.71 -0.79 5.67 16 39 H 0.10 3.53 7.08 -2.39 -0.02 3.51 16 40 H 0.12 3.17 8.05 -2.39 -0.02 3.15 16 41 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 44 H 0.10 5.56 6.20 -2.91 -0.02 5.54 16 45 H 0.28 13.62 8.30 -92.71 -0.77 12.85 16 Total: -1.00 -75.48 382.41 4.70 -70.78 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.23 Total: 30.71 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 4.62 Total: -42.33 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -2.93 Total: -74.33 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.75 Total: -25.02 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -75.48 4.70 -70.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776902810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.656 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds