Wall clock time and date at job start Tue Mar 31 2020 15:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30175 * 126.80529 * 2 1 4 4 O 1.20922 * 111.60418 * 180.25621 * 3 2 1 5 5 C 1.34036 * 111.56894 * 359.74330 * 4 3 2 6 6 C 1.50699 * 126.77823 * 180.02562 * 5 4 3 7 7 C 1.35448 * 106.44452 * 0.02562 * 5 4 3 8 8 C 1.50703 * 128.00492 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47428 * 14.99749 * 8 7 5 10 10 C 1.52991 * 109.47128 * 254.99711 * 8 7 5 11 11 N 1.46508 * 109.47226 * 134.99445 * 8 7 5 12 12 C 1.34768 * 120.00195 * 204.99848 * 11 8 7 13 13 O 1.21283 * 120.00153 * 359.97438 * 12 11 8 14 14 C 1.50698 * 119.99965 * 180.02562 * 12 11 8 15 15 C 1.50701 * 109.47150 * 180.02562 * 14 12 11 16 16 C 1.37636 * 120.12941 * 264.99955 * 15 14 12 17 17 C 1.38611 * 120.25061 * 180.29574 * 16 15 14 18 18 C 1.38653 * 120.50140 * 359.44427 * 17 16 15 19 19 C 1.37598 * 120.24629 * 0.55396 * 18 17 16 20 20 C 1.40704 * 120.12792 * 85.01908 * 15 14 12 21 21 C 1.41387 * 120.24480 * 359.95991 * 20 15 14 22 22 H 1.08006 * 119.99793 * 334.08076 * 21 20 15 23 23 C 1.39940 * 120.00234 * 154.08580 * 21 20 15 24 24 N 1.30822 * 119.99912 * 343.61546 * 23 21 20 25 25 Si 1.86803 * 120.00192 * 163.62649 * 23 21 20 26 26 H 1.48494 * 109.47516 * 89.99468 * 25 23 21 27 27 H 1.48504 * 109.46852 * 209.99866 * 25 23 21 28 28 H 1.48504 * 109.47021 * 329.99095 * 25 23 21 29 29 H 1.09000 * 109.47077 * 270.16411 * 1 2 3 30 30 H 1.09000 * 109.46953 * 30.16268 * 1 2 3 31 31 H 1.08995 * 109.47124 * 150.16676 * 1 2 3 32 32 H 1.09008 * 109.46993 * 270.00017 * 6 5 4 33 33 H 1.08999 * 109.47013 * 29.99663 * 6 5 4 34 34 H 1.09001 * 109.47475 * 150.00112 * 6 5 4 35 35 H 1.09000 * 109.47215 * 299.99794 * 10 8 7 36 36 H 1.08997 * 109.47498 * 59.99817 * 10 8 7 37 37 H 1.09004 * 109.47547 * 179.97438 * 10 8 7 38 38 H 0.96999 * 119.99681 * 25.00603 * 11 8 7 39 39 H 1.08990 * 109.47195 * 60.00231 * 14 12 11 40 40 H 1.09001 * 109.47170 * 299.99896 * 14 12 11 41 41 H 1.08004 * 119.87777 * 0.02562 * 16 15 14 42 42 H 1.07999 * 119.75152 * 179.70481 * 17 16 15 43 43 H 1.08004 * 119.87985 * 180.29954 * 18 17 16 44 44 H 1.08002 * 120.12910 * 179.74432 * 19 18 17 45 45 H 0.97001 * 120.00439 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7252 -0.0050 5 6 3.6025 -0.6069 -0.0035 6 6 4.9021 -1.3697 -0.0079 7 6 2.3539 -1.1320 0.0027 8 6 1.9590 -2.5864 0.0062 9 1 2.8229 -3.1969 0.2689 10 6 1.4588 -2.9823 -1.3844 11 7 0.8929 -2.8006 0.9880 12 6 0.7189 -4.0182 1.5389 13 8 1.4445 -4.9368 1.2215 14 6 -0.3781 -4.2386 2.5484 15 6 -0.3581 -5.6742 3.0065 16 6 -1.1763 -6.6029 2.4045 17 6 -1.1644 -7.9227 2.8279 18 6 -0.3220 -8.3254 3.8530 19 6 0.5045 -7.4141 4.4693 20 6 0.4967 -6.0702 4.0516 21 6 1.3419 -5.1251 4.6772 22 1 1.6602 -4.2450 4.1381 23 6 1.7661 -5.3299 5.9950 24 7 1.1481 -6.1982 6.7536 25 14 3.2145 -4.3631 6.6709 26 1 2.7250 -3.1038 7.2870 27 1 3.9166 -5.1758 7.6966 28 1 4.1536 -4.0415 5.5664 29 1 -0.3633 0.0029 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 5.2110 -1.5552 -1.0367 33 1 5.6682 -0.7852 0.5016 34 1 4.7672 -2.3204 0.5080 35 1 0.5948 -2.3719 -1.6472 36 1 2.2519 -2.8230 -2.1149 37 1 1.1736 -4.0344 -1.3821 38 1 0.3123 -2.0661 1.2415 39 1 -1.3423 -4.0161 2.0916 40 1 -0.2214 -3.5823 3.4044 41 1 -1.8332 -6.3014 1.6020 42 1 -1.8132 -8.6438 2.3530 43 1 -0.3175 -9.3573 4.1717 44 1 1.1569 -7.7290 5.2703 45 1 1.4423 -6.3405 7.6669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776929396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:30 Heat of formation + Delta-G solvation = 27.212957 kcal Electronic energy + Delta-G solvation = -27986.506288 eV Core-core repulsion = 24164.426037 eV Total energy + Delta-G solvation = -3822.080251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.07702 -39.45099 -37.53149 -36.30561 -34.02212 -33.60834 -33.26736 -31.80899 -30.23291 -29.42560 -28.90024 -27.78515 -26.74138 -25.03636 -24.16917 -21.53800 -20.90898 -20.53177 -20.17714 -19.25615 -17.80208 -17.32016 -17.08628 -16.42574 -15.80692 -15.31947 -14.78723 -14.45947 -14.35621 -14.19926 -13.70651 -13.59290 -13.54906 -13.34934 -13.15431 -13.07886 -12.92575 -12.68328 -12.56610 -12.45851 -12.04937 -11.70035 -11.58439 -11.55646 -11.15802 -11.04789 -10.96684 -10.87669 -10.69628 -10.38980 -10.03486 -9.47114 -9.40822 -9.37142 -9.15469 -9.11022 -8.80822 -7.29680 -7.27636 -6.72667 -4.32968 1.28929 2.00236 2.79657 2.92863 2.98986 3.06831 3.11604 3.27826 3.31782 3.60497 3.94187 4.00860 4.26249 4.65014 4.67664 4.77850 5.04234 5.13673 5.19580 5.22196 5.27869 5.42586 5.43385 5.47296 5.58116 5.68889 5.77885 5.79967 5.87038 5.94636 6.03510 6.16970 6.20910 6.29856 6.44155 6.52572 6.74834 6.81526 7.09925 7.31116 7.43822 7.65316 7.86773 7.95840 8.08770 8.12315 8.14810 8.33047 8.66216 8.83028 8.93130 9.03131 10.21559 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.003963 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.717045 B = 7063.958598 C = 8473.067214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.029 3.971 3 N -0.367 5.367 4 O 0.096 5.904 5 C -0.016 4.016 6 C -0.079 4.079 7 C -0.208 4.208 8 C 0.223 3.777 9 H 0.099 0.901 10 C -0.157 4.157 11 N -0.741 5.741 12 C 0.517 3.483 13 O -0.518 6.518 14 C -0.071 4.071 15 C -0.181 4.181 16 C -0.081 4.081 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.130 3.870 21 C -0.456 4.456 22 H 0.073 0.927 23 C 0.078 3.922 24 N -0.795 5.795 25 Si 0.900 3.100 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.262 1.262 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.394 0.606 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 10.657 -11.281 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 N -0.074 5.074 4 O 0.032 5.968 5 C -0.080 4.080 6 C -0.136 4.136 7 C -0.212 4.212 8 C 0.118 3.882 9 H 0.116 0.884 10 C -0.215 4.215 11 N -0.396 5.396 12 C 0.305 3.695 13 O -0.391 6.391 14 C -0.111 4.111 15 C -0.183 4.183 16 C -0.099 4.099 17 C -0.259 4.259 18 C -0.125 4.125 19 C -0.179 4.179 20 C 0.127 3.873 21 C -0.486 4.486 22 H 0.091 0.909 23 C -0.140 4.140 24 N -0.420 5.420 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.186 1.186 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.229 0.771 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.522 11.185 -11.249 16.063 hybrid contribution 0.294 0.068 0.554 0.631 sum 2.815 11.253 -10.695 15.778 Atomic orbital electron populations 1.20317 0.86046 1.04135 1.03751 1.23380 0.98871 0.88281 1.02449 1.73823 0.89269 1.23865 1.20416 1.84801 1.21655 1.22442 1.67940 1.24252 0.98168 0.83697 1.01882 1.20435 0.89917 0.99022 1.04227 1.21098 0.92040 0.97281 1.10829 1.18917 0.92124 0.87760 0.89439 0.88361 1.22157 1.01356 1.02613 0.95379 1.46317 1.35382 1.12892 1.44995 1.21266 0.85849 0.81248 0.81119 1.90677 1.45844 1.41693 1.60934 1.20272 0.95365 0.98400 0.97044 1.19033 1.03076 0.92002 1.04147 1.20290 0.98376 0.93487 0.97745 1.20298 1.06322 0.95556 1.03721 1.20675 0.97579 0.97484 0.96807 1.21286 1.01668 0.92835 1.02069 1.17325 0.88714 0.92049 0.89192 1.19448 1.25639 1.06746 0.96752 0.90867 1.25862 0.96254 0.94797 0.97063 1.69816 1.35205 1.29385 1.07643 0.86442 0.81926 0.80005 0.79162 1.19579 1.20045 1.18561 0.89743 0.90242 0.89596 0.89174 0.89635 0.88522 0.92495 0.91941 0.91038 0.77116 0.90584 0.88617 0.89789 0.89703 0.89619 0.86581 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 8.83 36.01 0.32 -0.44 16 2 C 0.03 0.35 7.17 -82.10 -0.59 -0.24 16 3 N -0.37 -4.91 12.07 33.42 0.40 -4.51 16 4 O 0.10 1.20 11.20 17.19 0.19 1.39 16 5 C -0.02 -0.18 7.49 -35.30 -0.26 -0.44 16 6 C -0.08 -0.62 10.26 36.01 0.37 -0.26 16 7 C -0.21 -2.50 5.21 -104.42 -0.54 -3.04 16 8 C 0.22 2.88 2.93 -69.08 -0.20 2.68 16 9 H 0.10 1.42 6.58 -51.93 -0.34 1.08 16 10 C -0.16 -1.79 9.47 37.15 0.35 -1.43 16 11 N -0.74 -10.51 5.00 -54.93 -0.27 -10.79 16 12 C 0.52 9.64 7.43 -10.99 -0.08 9.56 16 13 O -0.52 -11.78 15.70 5.55 0.09 -11.69 16 14 C -0.07 -1.36 5.18 -29.04 -0.15 -1.51 16 15 C -0.18 -4.28 4.43 -103.91 -0.46 -4.74 16 16 C -0.08 -1.84 9.66 -39.66 -0.38 -2.22 16 17 C -0.24 -5.53 10.05 -39.29 -0.39 -5.93 16 18 C -0.11 -2.60 10.02 -39.66 -0.40 -2.99 16 19 C -0.16 -4.23 8.68 -38.87 -0.34 -4.57 16 20 C 0.13 3.43 5.56 -106.83 -0.59 2.83 16 21 C -0.46 -11.89 8.14 -37.75 -0.31 -12.20 16 22 H 0.07 1.86 6.68 -52.48 -0.35 1.51 16 23 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 24 N -0.79 -20.44 10.97 55.55 0.61 -19.83 16 25 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 28 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 29 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.68 6.79 -51.93 -0.35 0.33 16 32 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.82 7.28 -51.93 -0.38 0.45 16 35 H 0.06 0.58 7.00 -51.93 -0.36 0.21 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.39 4.68 6.27 -40.82 -0.26 4.42 16 39 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 40 H 0.10 1.82 7.06 -51.93 -0.37 1.45 16 41 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 42 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 44 H 0.12 3.17 6.22 -52.49 -0.33 2.85 16 45 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -31.59 374.50 -8.20 -39.80 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.08 Total: 9.26 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -3.76 Total: -23.08 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.74 Total: -35.13 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.28 Total: -10.30 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.59 -8.20 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776929396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.011 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds