Wall clock time and date at job start Tue Mar 31 2020 15:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30175 * 126.80529 * 2 1 4 4 O 1.20922 * 111.60418 * 180.25621 * 3 2 1 5 5 C 1.34036 * 111.56894 * 359.74330 * 4 3 2 6 6 C 1.50699 * 126.77823 * 180.02562 * 5 4 3 7 7 C 1.35448 * 106.44452 * 0.02562 * 5 4 3 8 8 C 1.50703 * 128.00492 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47428 * 14.99749 * 8 7 5 10 10 C 1.52991 * 109.47128 * 254.99711 * 8 7 5 11 11 N 1.46508 * 109.47226 * 134.99445 * 8 7 5 12 12 C 1.34768 * 120.00195 * 204.99848 * 11 8 7 13 13 O 1.21283 * 120.00153 * 359.97438 * 12 11 8 14 14 C 1.50698 * 119.99965 * 180.02562 * 12 11 8 15 15 C 1.50701 * 109.47150 * 180.02562 * 14 12 11 16 16 C 1.37636 * 120.12941 * 264.99955 * 15 14 12 17 17 C 1.38611 * 120.25061 * 180.29574 * 16 15 14 18 18 C 1.38653 * 120.50140 * 359.44427 * 17 16 15 19 19 C 1.37598 * 120.24629 * 0.55396 * 18 17 16 20 20 C 1.40704 * 120.12792 * 85.01908 * 15 14 12 21 21 C 1.41387 * 120.24480 * 359.95991 * 20 15 14 22 22 H 1.08006 * 119.99793 * 334.08076 * 21 20 15 23 23 C 1.39940 * 120.00234 * 154.08580 * 21 20 15 24 24 N 1.30822 * 119.99912 * 343.61546 * 23 21 20 25 25 Si 1.86803 * 120.00192 * 163.62649 * 23 21 20 26 26 H 1.48494 * 109.47516 * 89.99468 * 25 23 21 27 27 H 1.48504 * 109.46852 * 209.99866 * 25 23 21 28 28 H 1.48504 * 109.47021 * 329.99095 * 25 23 21 29 29 H 1.09000 * 109.47077 * 270.16411 * 1 2 3 30 30 H 1.09000 * 109.46953 * 30.16268 * 1 2 3 31 31 H 1.08995 * 109.47124 * 150.16676 * 1 2 3 32 32 H 1.09008 * 109.46993 * 270.00017 * 6 5 4 33 33 H 1.08999 * 109.47013 * 29.99663 * 6 5 4 34 34 H 1.09001 * 109.47475 * 150.00112 * 6 5 4 35 35 H 1.09000 * 109.47215 * 299.99794 * 10 8 7 36 36 H 1.08997 * 109.47498 * 59.99817 * 10 8 7 37 37 H 1.09004 * 109.47547 * 179.97438 * 10 8 7 38 38 H 0.96999 * 119.99681 * 25.00603 * 11 8 7 39 39 H 1.08990 * 109.47195 * 60.00231 * 14 12 11 40 40 H 1.09001 * 109.47170 * 299.99896 * 14 12 11 41 41 H 1.08004 * 119.87777 * 0.02562 * 16 15 14 42 42 H 1.07999 * 119.75152 * 179.70481 * 17 16 15 43 43 H 1.08004 * 119.87985 * 180.29954 * 18 17 16 44 44 H 1.08002 * 120.12910 * 179.74432 * 19 18 17 45 45 H 0.97001 * 120.00439 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7252 -0.0050 5 6 3.6025 -0.6069 -0.0035 6 6 4.9021 -1.3697 -0.0079 7 6 2.3539 -1.1320 0.0027 8 6 1.9590 -2.5864 0.0062 9 1 2.8229 -3.1969 0.2689 10 6 1.4588 -2.9823 -1.3844 11 7 0.8929 -2.8006 0.9880 12 6 0.7189 -4.0182 1.5389 13 8 1.4445 -4.9368 1.2215 14 6 -0.3781 -4.2386 2.5484 15 6 -0.3581 -5.6742 3.0065 16 6 -1.1763 -6.6029 2.4045 17 6 -1.1644 -7.9227 2.8279 18 6 -0.3220 -8.3254 3.8530 19 6 0.5045 -7.4141 4.4693 20 6 0.4967 -6.0702 4.0516 21 6 1.3419 -5.1251 4.6772 22 1 1.6602 -4.2450 4.1381 23 6 1.7661 -5.3299 5.9950 24 7 1.1481 -6.1982 6.7536 25 14 3.2145 -4.3631 6.6709 26 1 2.7250 -3.1038 7.2870 27 1 3.9166 -5.1758 7.6966 28 1 4.1536 -4.0415 5.5664 29 1 -0.3633 0.0029 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 5.2110 -1.5552 -1.0367 33 1 5.6682 -0.7852 0.5016 34 1 4.7672 -2.3204 0.5080 35 1 0.5948 -2.3719 -1.6472 36 1 2.2519 -2.8230 -2.1149 37 1 1.1736 -4.0344 -1.3821 38 1 0.3123 -2.0661 1.2415 39 1 -1.3423 -4.0161 2.0916 40 1 -0.2214 -3.5823 3.4044 41 1 -1.8332 -6.3014 1.6020 42 1 -1.8132 -8.6438 2.3530 43 1 -0.3175 -9.3573 4.1717 44 1 1.1569 -7.7290 5.2703 45 1 1.4423 -6.3405 7.6669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776929396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:30 Heat of formation + Delta-G solvation = 9.602807 kcal Electronic energy + Delta-G solvation = -27987.269921 eV Core-core repulsion = 24164.426037 eV Total energy + Delta-G solvation = -3822.843884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.98869 -40.88889 -39.23039 -37.51642 -35.48178 -34.93983 -34.32292 -33.42537 -31.46158 -31.23346 -29.69564 -28.55769 -28.37783 -26.84997 -25.21182 -22.83676 -22.67600 -21.71141 -21.36373 -20.72631 -19.05819 -18.72527 -18.29473 -17.75176 -17.28170 -16.78397 -16.31217 -16.11017 -15.46122 -15.31880 -15.15013 -14.97371 -14.66222 -14.37070 -14.29021 -14.09016 -13.94714 -13.75009 -13.61686 -13.50759 -13.36365 -13.32304 -12.94520 -12.87300 -12.74202 -12.63899 -12.47838 -12.43654 -12.12547 -11.82507 -11.29639 -11.19481 -11.01228 -10.95009 -10.72946 -10.24979 -10.03473 -9.19763 -9.13258 -8.58411 -6.27306 0.39822 1.00537 1.09305 1.17728 1.35174 1.45991 1.53471 1.86083 2.08829 2.19523 2.36348 2.80319 3.15001 3.44714 3.71561 3.80031 3.88392 4.13620 4.27021 4.29086 4.36435 4.44136 4.49477 4.60335 4.62190 4.63730 4.65660 4.70733 4.74068 4.80548 4.83144 4.84887 4.96730 5.09382 5.11119 5.13772 5.21819 5.31443 5.39584 5.55848 5.57823 5.80057 6.06560 6.19254 6.24618 6.44584 6.63985 6.77118 7.01432 7.14036 7.22832 7.44230 8.38001 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.003963 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.717045 B = 7063.958598 C = 8473.067214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.031 3.969 3 N -0.393 5.393 4 O 0.085 5.915 5 C -0.009 4.009 6 C -0.080 4.080 7 C -0.225 4.225 8 C 0.226 3.774 9 H 0.080 0.920 10 C -0.150 4.150 11 N -0.722 5.722 12 C 0.522 3.478 13 O -0.566 6.566 14 C -0.072 4.072 15 C -0.185 4.185 16 C -0.090 4.090 17 C -0.242 4.242 18 C -0.118 4.118 19 C -0.194 4.194 20 C 0.097 3.903 21 C -0.481 4.481 22 H 0.070 0.930 23 C 0.038 3.962 24 N -0.826 5.826 25 Si 0.966 3.034 26 H -0.259 1.259 27 H -0.268 1.268 28 H -0.266 1.266 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.408 0.592 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 12.080 -12.563 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 N -0.102 5.102 4 O 0.024 5.976 5 C -0.073 4.073 6 C -0.137 4.137 7 C -0.230 4.230 8 C 0.121 3.879 9 H 0.098 0.902 10 C -0.208 4.208 11 N -0.377 5.377 12 C 0.310 3.690 13 O -0.443 6.443 14 C -0.111 4.111 15 C -0.187 4.187 16 C -0.108 4.108 17 C -0.261 4.261 18 C -0.136 4.136 19 C -0.213 4.213 20 C 0.095 3.905 21 C -0.511 4.511 22 H 0.088 0.912 23 C -0.177 4.177 24 N -0.453 5.453 25 Si 0.787 3.213 26 H -0.183 1.183 27 H -0.192 1.192 28 H -0.190 1.190 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.245 0.755 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.030 12.651 -12.542 17.930 hybrid contribution 0.383 -0.396 0.865 1.026 sum 2.413 12.255 -11.677 17.099 Atomic orbital electron populations 1.20486 0.84102 1.05217 1.04792 1.23837 1.00161 0.87741 1.01057 1.73820 0.89670 1.24705 1.22047 1.84781 1.21577 1.22952 1.68288 1.24800 0.99177 0.83391 0.99930 1.20607 0.88904 0.98370 1.05840 1.21011 0.92656 0.96671 1.12641 1.18903 0.91057 0.88174 0.89734 0.90164 1.22091 1.02536 1.01523 0.94657 1.46095 1.35442 1.11841 1.44282 1.21063 0.85162 0.81872 0.80865 1.90664 1.47473 1.43505 1.62694 1.20299 0.97646 0.95694 0.97468 1.19516 1.01748 0.94582 1.02852 1.20735 0.98502 0.93290 0.98282 1.20715 1.05851 0.96599 1.02919 1.20945 0.97424 0.98131 0.97137 1.21292 1.03113 0.93927 1.02984 1.17711 0.89943 0.92198 0.90681 1.19586 1.26946 1.07047 0.97520 0.91159 1.26615 0.98323 0.95728 0.97013 1.69878 1.36522 1.30738 1.08143 0.85448 0.78454 0.79005 0.78345 1.18334 1.19233 1.18987 0.88621 0.89271 0.88437 0.86850 0.88088 0.89223 0.90892 0.90336 0.92972 0.75503 0.86713 0.88784 0.86389 0.86742 0.87834 0.88667 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 8.83 71.24 0.63 -0.71 16 2 C 0.03 0.69 7.17 43.58 0.31 1.00 16 3 N -0.39 -10.00 12.07 -49.56 -0.60 -10.60 16 4 O 0.08 2.03 11.20 71.67 0.80 2.83 16 5 C -0.01 -0.19 7.49 25.04 0.19 0.00 16 6 C -0.08 -1.14 10.26 71.24 0.73 -0.41 16 7 C -0.23 -5.06 5.21 -19.74 -0.10 -5.16 16 8 C 0.23 5.56 2.93 44.24 0.13 5.69 16 9 H 0.08 2.30 6.58 -2.39 -0.02 2.29 16 10 C -0.15 -3.15 9.47 71.98 0.68 -2.46 16 11 N -0.72 -19.34 5.00 -446.10 -2.23 -21.57 16 12 C 0.52 19.00 7.43 87.66 0.65 19.65 16 13 O -0.57 -25.87 15.70 -3.04 -0.05 -25.92 16 14 C -0.07 -2.63 5.18 29.10 0.15 -2.48 16 15 C -0.19 -8.69 4.43 -19.40 -0.09 -8.78 16 16 C -0.09 -3.94 9.66 22.22 0.21 -3.73 16 17 C -0.24 -10.82 10.05 22.46 0.23 -10.60 16 18 C -0.12 -5.77 10.02 22.22 0.22 -5.55 16 19 C -0.19 -10.64 8.68 22.73 0.20 -10.45 16 20 C 0.10 5.25 5.56 -21.29 -0.12 5.13 16 21 C -0.48 -25.75 8.14 23.46 0.19 -25.56 16 22 H 0.07 3.66 6.68 -2.91 -0.02 3.64 16 23 C 0.04 1.92 5.16 85.26 0.44 2.36 16 24 N -0.83 -43.78 10.97 21.82 0.24 -43.55 16 25 Si 0.97 39.08 29.59 68.60 2.03 41.11 16 26 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 27 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 28 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 29 H 0.10 1.25 7.88 -2.39 -0.02 1.23 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.23 6.79 -2.39 -0.02 1.22 16 32 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.45 7.28 -2.39 -0.02 1.44 16 35 H 0.07 1.28 7.00 -2.39 -0.02 1.27 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.41 8.71 6.27 -92.71 -0.58 8.13 16 39 H 0.11 3.25 8.05 -2.39 -0.02 3.23 16 40 H 0.09 3.50 7.06 -2.39 -0.02 3.48 16 41 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 42 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 43 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 44 H 0.10 5.50 6.22 -2.91 -0.02 5.48 16 45 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -70.50 374.50 5.29 -65.21 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 0.44 Total: 34.55 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 4.66 Total: -42.06 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -2.59 Total: -75.72 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.75 Total: -23.09 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -70.50 5.29 -65.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776929396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.811 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds