Wall clock time and date at job start Tue Mar 31 2020 15:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35334 * 126.42932 * 2 1 4 4 C 1.41578 * 105.55638 * 180.02562 * 3 2 1 5 5 C 1.47532 * 126.44602 * 180.02562 * 4 3 2 6 6 O 1.21496 * 120.00431 * 359.97438 * 5 4 3 7 7 O 1.34747 * 119.99893 * 179.97438 * 5 4 3 8 8 C 1.45199 * 116.99974 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47110 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46998 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46816 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99641 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99641 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00110 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99517 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47367 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46972 * 120.00448 * 15 13 11 18 18 H 1.48503 * 109.47193 * 239.99791 * 15 13 11 19 19 N 1.31898 * 107.09983 * 359.97438 * 4 3 2 20 20 N 1.28476 * 110.11658 * 359.72133 * 19 4 3 21 21 C 1.40101 * 124.95823 * 180.30493 * 20 19 4 22 22 C 1.38864 * 120.06811 * 42.21844 * 21 20 19 23 23 C 1.38117 * 119.92927 * 179.79328 * 22 21 20 24 24 C 1.38276 * 120.06843 * 0.47670 * 23 22 21 25 25 C 1.50701 * 119.92889 * 179.72515 * 24 23 22 26 26 C 1.38275 * 120.14049 * 359.75289 * 24 23 22 27 27 C 1.38118 * 120.06876 * 0.02562 * 26 24 23 28 28 H 1.08998 * 109.47145 * 95.18847 * 1 2 3 29 29 H 1.09004 * 109.46883 * 215.18120 * 1 2 3 30 30 H 1.08995 * 109.47461 * 335.18193 * 1 2 3 31 31 H 1.08005 * 127.21939 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47342 * 300.00305 * 8 7 5 33 33 H 1.09000 * 109.47277 * 59.99988 * 8 7 5 34 34 H 1.08999 * 109.47129 * 300.00267 * 9 8 7 35 35 H 1.09007 * 109.46558 * 59.99798 * 9 8 7 36 36 H 1.09003 * 109.47032 * 299.99461 * 10 9 8 37 37 H 1.08993 * 109.47126 * 60.00218 * 10 9 8 38 38 H 0.96999 * 119.99643 * 179.97438 * 14 13 11 39 39 H 1.08003 * 120.03175 * 0.02562 * 22 21 20 40 40 H 1.08005 * 119.95814 * 180.22699 * 23 22 21 41 41 H 1.09005 * 109.47491 * 270.02574 * 25 24 23 42 42 H 1.09001 * 109.46894 * 30.02380 * 25 24 23 43 43 H 1.08997 * 109.47377 * 150.02733 * 25 24 23 44 44 H 1.08003 * 119.96706 * 179.97438 * 26 24 23 45 45 H 1.07999 * 120.03111 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.0889 0.0000 4 6 3.6335 0.5844 -0.0006 5 6 4.8753 1.3811 -0.0003 6 8 4.8185 2.5947 0.0001 7 8 6.0725 0.7626 -0.0005 8 6 7.2519 1.6095 -0.0007 9 6 8.5075 0.7352 -0.0015 10 6 9.7503 1.6277 -0.0024 11 6 10.9871 0.7665 -0.0038 12 1 10.8957 -0.3096 -0.0036 13 6 12.2351 1.3525 -0.0043 14 7 12.3462 2.6629 -0.0041 15 14 13.7680 0.2850 -0.0053 16 1 13.3742 -1.1468 -0.0061 17 1 14.5737 0.5770 -1.2181 18 1 14.5749 0.5764 1.2068 19 7 3.5467 -0.7317 -0.0004 20 7 2.3139 -1.0932 0.0062 21 6 1.8667 -2.4209 0.0145 22 6 2.4912 -3.3603 0.8243 23 6 2.0453 -4.6675 0.8334 24 6 0.9845 -5.0433 0.0300 25 6 0.5045 -6.4718 0.0378 26 6 0.3636 -4.1112 -0.7811 27 6 0.8019 -2.8015 -0.7913 28 1 -0.3633 -0.0929 -1.0234 29 1 -0.3633 -0.8400 0.5921 30 1 -0.3634 0.9327 0.4313 31 1 2.0066 2.1252 -0.0004 32 1 7.2472 2.2388 -0.8907 33 1 7.2475 2.2389 0.8892 34 1 8.5124 0.1057 0.8883 35 1 8.5116 0.1062 -0.8917 36 1 9.7451 2.2568 -0.8925 37 1 9.7463 2.2570 0.8875 38 1 13.2243 3.0751 -0.0040 39 1 3.3224 -3.0683 1.4491 40 1 2.5284 -5.3978 1.4658 41 1 1.0439 -7.0406 -0.7197 42 1 0.6857 -6.9105 1.0190 43 1 -0.5631 -6.4976 -0.1803 44 1 -0.4645 -4.4079 -1.4078 45 1 0.3167 -2.0741 -1.4253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777156167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:47 Heat of formation + Delta-G solvation = 3.561894 kcal Electronic energy + Delta-G solvation = -25987.798326 eV Core-core repulsion = 22164.692488 eV Total energy + Delta-G solvation = -3823.105838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.21185 -40.01699 -39.61251 -36.34893 -34.69673 -33.92391 -33.27233 -31.73071 -31.47834 -31.33763 -27.66698 -27.58640 -26.72021 -24.63307 -23.50243 -22.91975 -22.01070 -21.00588 -20.34188 -19.88849 -18.17382 -17.06771 -16.81621 -16.60421 -16.10676 -16.07263 -15.85603 -15.36881 -14.81298 -14.43154 -14.35625 -14.12987 -13.99917 -13.87679 -13.60805 -13.40269 -13.20344 -12.76991 -12.70968 -12.58419 -12.14842 -12.06599 -12.04858 -11.82518 -11.62747 -11.05053 -10.94945 -10.70174 -10.57899 -10.43801 -10.31796 -10.10397 -9.64892 -9.56763 -9.47162 -9.26973 -9.10190 -8.74800 -8.34893 -5.99532 -4.02044 0.36144 0.78006 1.39519 1.78509 1.99550 2.92589 3.07825 3.20595 3.33015 3.40194 3.45114 4.10730 4.19210 4.28872 4.34700 4.39671 4.47377 4.66031 4.74686 4.76691 4.99583 5.04805 5.09513 5.11337 5.24684 5.26712 5.36445 5.37487 5.44568 5.47754 5.58232 5.65737 5.67898 5.69843 5.76008 5.99564 6.04768 6.12010 6.20931 6.52755 6.61908 6.64348 6.88477 7.05125 7.56281 7.65930 7.77188 7.99263 8.02416 8.41038 9.04443 9.61908 11.11992 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.002129 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.888946 B =13145.758122 C =15022.766173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.012 3.988 3 C -0.168 4.168 4 C 0.010 3.990 5 C 0.550 3.450 6 O -0.501 6.501 7 O -0.342 6.342 8 C 0.068 3.932 9 C -0.108 4.108 10 C 0.023 3.977 11 C -0.519 4.519 12 H 0.058 0.942 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.225 5.225 20 N -0.235 5.235 21 C 0.120 3.880 22 C -0.090 4.090 23 C -0.105 4.105 24 C -0.076 4.076 25 C -0.118 4.118 26 C -0.106 4.106 27 C -0.108 4.108 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.260 0.740 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.135 0.865 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.597 -14.688 0.160 35.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.194 4.194 4 C -0.149 4.149 5 C 0.392 3.608 6 O -0.387 6.387 7 O -0.257 6.257 8 C -0.005 4.005 9 C -0.146 4.146 10 C -0.014 4.014 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.059 5.059 20 N -0.019 5.019 21 C 0.031 3.969 22 C -0.110 4.110 23 C -0.123 4.123 24 C -0.077 4.077 25 C -0.174 4.174 26 C -0.124 4.124 27 C -0.128 4.128 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.188 0.812 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.153 0.847 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -31.778 -15.180 0.164 35.218 hybrid contribution 0.678 0.501 -0.039 0.844 sum -31.100 -14.679 0.125 34.391 Atomic orbital electron populations 1.20451 0.86237 1.04374 1.03221 1.21639 0.95629 0.85738 1.07853 1.21533 0.89769 0.99834 1.08300 1.20954 0.92944 0.89536 1.11436 1.19483 0.82988 0.85256 0.73071 1.90854 1.87789 1.13950 1.46149 1.86646 1.14442 1.41910 1.82699 1.23577 0.81198 0.93446 1.02306 1.21764 0.91766 0.99007 1.02076 1.19065 0.89870 0.94711 0.97722 1.21220 0.90676 0.93170 1.50659 0.92376 1.25037 0.99251 0.95000 0.95290 1.69980 1.23725 1.08913 1.50769 0.86490 0.83002 0.80687 0.77558 1.19685 1.21001 1.20997 1.73895 1.00434 1.14679 1.16910 1.42798 1.03136 1.04864 1.51118 1.17513 0.98218 0.80636 1.00542 1.21146 0.99652 0.92678 0.97510 1.21016 0.96514 0.95322 0.99456 1.20123 0.95353 0.96532 0.95670 1.20849 1.01613 0.91843 1.03114 1.20906 1.00527 0.91676 0.99340 1.21058 0.96607 0.97309 0.97844 0.90208 0.90735 0.89215 0.81214 0.91306 0.91296 0.92101 0.92098 0.96170 0.96168 0.92993 0.84391 0.84649 0.90600 0.91096 0.91175 0.84732 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 8.75 36.01 0.32 -0.16 16 2 C 0.01 0.12 6.74 -81.84 -0.55 -0.43 16 3 C -0.17 -2.06 10.72 -39.34 -0.42 -2.49 16 4 C 0.01 0.16 7.16 -82.78 -0.59 -0.43 16 5 C 0.55 10.03 7.96 34.52 0.27 10.30 16 6 O -0.50 -9.81 16.71 -19.26 -0.32 -10.13 16 7 O -0.34 -6.64 10.23 -40.62 -0.42 -7.06 16 8 C 0.07 1.35 5.48 37.16 0.20 1.55 16 9 C -0.11 -2.39 5.53 -26.73 -0.15 -2.54 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -27.30 13.29 55.43 0.74 -26.57 16 15 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 N -0.23 -3.47 11.74 33.41 0.39 -3.08 16 20 N -0.23 -2.85 3.43 -6.85 -0.02 -2.88 16 21 C 0.12 1.19 6.02 -83.62 -0.50 0.69 16 22 C -0.09 -0.84 9.76 -39.39 -0.38 -1.23 16 23 C -0.10 -0.73 9.69 -39.61 -0.38 -1.11 16 24 C -0.08 -0.45 5.88 -104.59 -0.62 -1.06 16 25 C -0.12 -0.41 10.01 36.01 0.36 -0.05 16 26 C -0.11 -0.60 9.69 -39.61 -0.38 -0.98 16 27 C -0.11 -0.78 8.49 -39.40 -0.33 -1.11 16 28 H 0.08 0.32 7.58 -51.93 -0.39 -0.07 16 29 H 0.07 0.37 7.47 -51.93 -0.39 -0.02 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 43 H 0.07 0.17 8.08 -51.93 -0.42 -0.25 16 44 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 45 H 0.13 0.75 6.57 -52.49 -0.34 0.41 16 LS Contribution 388.88 15.07 5.86 5.86 Total: -1.00 -34.81 388.88 -9.09 -43.90 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -6.58 Total: -4.68 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.71 Total: -12.36 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 1.11 Total: -32.52 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.74 Total: -17.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.81 -9.09 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777156167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.462 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds