Wall clock time and date at job start Tue Mar 31 2020 15:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35334 * 126.42932 * 2 1 4 4 C 1.41578 * 105.55638 * 180.02562 * 3 2 1 5 5 C 1.47532 * 126.44602 * 180.02562 * 4 3 2 6 6 O 1.21496 * 120.00431 * 359.97438 * 5 4 3 7 7 O 1.34747 * 119.99893 * 179.97438 * 5 4 3 8 8 C 1.45199 * 116.99974 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47110 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46998 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46816 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99641 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99641 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00110 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99517 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47367 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46972 * 120.00448 * 15 13 11 18 18 H 1.48503 * 109.47193 * 239.99791 * 15 13 11 19 19 N 1.31898 * 107.09983 * 359.97438 * 4 3 2 20 20 N 1.28476 * 110.11658 * 359.72133 * 19 4 3 21 21 C 1.40101 * 124.95823 * 180.30493 * 20 19 4 22 22 C 1.38864 * 120.06811 * 42.21844 * 21 20 19 23 23 C 1.38117 * 119.92927 * 179.79328 * 22 21 20 24 24 C 1.38276 * 120.06843 * 0.47670 * 23 22 21 25 25 C 1.50701 * 119.92889 * 179.72515 * 24 23 22 26 26 C 1.38275 * 120.14049 * 359.75289 * 24 23 22 27 27 C 1.38118 * 120.06876 * 0.02562 * 26 24 23 28 28 H 1.08998 * 109.47145 * 95.18847 * 1 2 3 29 29 H 1.09004 * 109.46883 * 215.18120 * 1 2 3 30 30 H 1.08995 * 109.47461 * 335.18193 * 1 2 3 31 31 H 1.08005 * 127.21939 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47342 * 300.00305 * 8 7 5 33 33 H 1.09000 * 109.47277 * 59.99988 * 8 7 5 34 34 H 1.08999 * 109.47129 * 300.00267 * 9 8 7 35 35 H 1.09007 * 109.46558 * 59.99798 * 9 8 7 36 36 H 1.09003 * 109.47032 * 299.99461 * 10 9 8 37 37 H 1.08993 * 109.47126 * 60.00218 * 10 9 8 38 38 H 0.96999 * 119.99643 * 179.97438 * 14 13 11 39 39 H 1.08003 * 120.03175 * 0.02562 * 22 21 20 40 40 H 1.08005 * 119.95814 * 180.22699 * 23 22 21 41 41 H 1.09005 * 109.47491 * 270.02574 * 25 24 23 42 42 H 1.09001 * 109.46894 * 30.02380 * 25 24 23 43 43 H 1.08997 * 109.47377 * 150.02733 * 25 24 23 44 44 H 1.08003 * 119.96706 * 179.97438 * 26 24 23 45 45 H 1.07999 * 120.03111 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.0889 0.0000 4 6 3.6335 0.5844 -0.0006 5 6 4.8753 1.3811 -0.0003 6 8 4.8185 2.5947 0.0001 7 8 6.0725 0.7626 -0.0005 8 6 7.2519 1.6095 -0.0007 9 6 8.5075 0.7352 -0.0015 10 6 9.7503 1.6277 -0.0024 11 6 10.9871 0.7665 -0.0038 12 1 10.8957 -0.3096 -0.0036 13 6 12.2351 1.3525 -0.0043 14 7 12.3462 2.6629 -0.0041 15 14 13.7680 0.2850 -0.0053 16 1 13.3742 -1.1468 -0.0061 17 1 14.5737 0.5770 -1.2181 18 1 14.5749 0.5764 1.2068 19 7 3.5467 -0.7317 -0.0004 20 7 2.3139 -1.0932 0.0062 21 6 1.8667 -2.4209 0.0145 22 6 2.4912 -3.3603 0.8243 23 6 2.0453 -4.6675 0.8334 24 6 0.9845 -5.0433 0.0300 25 6 0.5045 -6.4718 0.0378 26 6 0.3636 -4.1112 -0.7811 27 6 0.8019 -2.8015 -0.7913 28 1 -0.3633 -0.0929 -1.0234 29 1 -0.3633 -0.8400 0.5921 30 1 -0.3634 0.9327 0.4313 31 1 2.0066 2.1252 -0.0004 32 1 7.2472 2.2388 -0.8907 33 1 7.2475 2.2389 0.8892 34 1 8.5124 0.1057 0.8883 35 1 8.5116 0.1062 -0.8917 36 1 9.7451 2.2568 -0.8925 37 1 9.7463 2.2570 0.8875 38 1 13.2243 3.0751 -0.0040 39 1 3.3224 -3.0683 1.4491 40 1 2.5284 -5.3978 1.4658 41 1 1.0439 -7.0406 -0.7197 42 1 0.6857 -6.9105 1.0190 43 1 -0.5631 -6.4976 -0.1803 44 1 -0.4645 -4.4079 -1.4078 45 1 0.3167 -2.0741 -1.4253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777156167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:46 Heat of formation + Delta-G solvation = -14.746359 kcal Electronic energy + Delta-G solvation = -25988.592231 eV Core-core repulsion = 22164.692488 eV Total energy + Delta-G solvation = -3823.899743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.14285 -41.38874 -40.29314 -37.90890 -35.97747 -35.39963 -34.03167 -33.69214 -32.12645 -32.02282 -29.26419 -28.27951 -27.78521 -25.91368 -24.66747 -24.01879 -22.78752 -22.22160 -21.90498 -21.08218 -19.07775 -18.61456 -18.22428 -17.94145 -17.56434 -17.31336 -16.54082 -16.50118 -16.09931 -15.63753 -15.44037 -14.92264 -14.77523 -14.61742 -14.54975 -14.30571 -14.08505 -13.95833 -13.81230 -13.79447 -13.30662 -13.07494 -13.02301 -12.86963 -12.53860 -12.53016 -12.45265 -12.19430 -12.14368 -12.08541 -11.93201 -11.53724 -11.47887 -11.25717 -10.93175 -10.59450 -10.15137 -10.09440 -9.43267 -8.23331 -6.34890 -0.35154 0.25261 0.26760 0.96285 1.08734 1.39816 1.40447 1.54120 1.64305 1.90790 2.40073 2.53950 3.10143 3.17279 3.52030 3.67947 3.80795 3.85041 3.92514 3.94972 3.99542 4.18177 4.29258 4.32494 4.34917 4.38257 4.51005 4.68048 4.74277 4.74888 4.79968 4.88387 4.88802 4.96563 5.00184 5.02205 5.05803 5.17215 5.23024 5.26480 5.27500 5.46046 5.53758 5.60757 5.67615 5.77836 5.94135 6.17142 6.41505 6.73316 6.80312 7.34248 8.89123 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.002129 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.888946 B =13145.758122 C =15022.766173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.029 3.971 3 C -0.180 4.180 4 C -0.022 4.022 5 C 0.550 3.450 6 O -0.522 6.522 7 O -0.350 6.350 8 C 0.076 3.924 9 C -0.093 4.093 10 C 0.027 3.973 11 C -0.543 4.543 12 H 0.063 0.937 13 C -0.002 4.002 14 N -0.932 5.932 15 Si 0.971 3.029 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.276 1.276 19 N -0.260 5.260 20 N -0.228 5.228 21 C 0.084 3.916 22 C -0.111 4.111 23 C -0.110 4.110 24 C -0.071 4.071 25 C -0.117 4.117 26 C -0.101 4.101 27 C -0.102 4.102 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.185 0.815 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.000 1.000 37 H 0.000 1.000 38 H 0.265 0.735 39 H 0.117 0.883 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.168 0.832 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.249 -17.260 -0.442 39.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.207 4.207 4 C -0.179 4.179 5 C 0.394 3.606 6 O -0.409 6.409 7 O -0.265 6.265 8 C 0.003 3.997 9 C -0.131 4.131 10 C -0.010 4.010 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.200 4.200 14 N -0.572 5.572 15 Si 0.795 3.205 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.202 1.202 19 N -0.095 5.095 20 N -0.013 5.013 21 C -0.004 4.004 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.071 4.071 25 C -0.174 4.174 26 C -0.119 4.119 27 C -0.122 4.122 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.126 0.874 31 H 0.203 0.797 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.167 0.833 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.186 0.814 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -34.445 -17.765 -0.435 38.759 hybrid contribution 1.344 1.170 0.150 1.788 sum -33.101 -16.596 -0.285 37.029 Atomic orbital electron populations 1.20696 0.82420 1.05872 1.05146 1.22367 0.97598 0.84331 1.04969 1.21803 0.88484 1.01296 1.09069 1.20827 0.92809 0.90079 1.14185 1.19915 0.83113 0.85411 0.72169 1.90822 1.87984 1.14766 1.47364 1.86627 1.14839 1.41926 1.83114 1.23280 0.81120 0.92903 1.02387 1.21467 0.90972 0.98321 1.02345 1.18936 0.91673 0.94698 0.95704 1.21624 0.91851 0.93690 1.50960 0.91921 1.26026 1.02963 0.96440 0.94556 1.70107 1.24884 1.10836 1.51380 0.85310 0.78313 0.79005 0.77872 1.18587 1.20219 1.20202 1.73795 1.02752 1.14618 1.18367 1.43085 1.02427 1.06270 1.49471 1.17906 1.00019 0.79827 1.02696 1.21151 0.99747 0.93959 0.98177 1.21230 0.97089 0.94518 1.00045 1.20499 0.94244 0.97973 0.94407 1.20925 1.02677 0.90019 1.03760 1.21324 1.00850 0.90740 0.98980 1.21303 0.95383 0.98471 0.97048 0.87758 0.89597 0.87422 0.79746 0.91279 0.91257 0.91741 0.91780 0.98199 0.98185 0.92613 0.86502 0.83282 0.90015 0.90482 0.89432 0.81438 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 8.75 71.24 0.62 -0.05 16 2 C 0.03 0.56 6.74 41.26 0.28 0.83 16 3 C -0.18 -4.42 10.72 22.42 0.24 -4.18 16 4 C -0.02 -0.73 7.16 42.41 0.30 -0.43 16 5 C 0.55 21.05 7.96 70.27 0.56 21.61 16 6 O -0.52 -21.29 16.71 19.85 0.33 -20.95 16 7 O -0.35 -14.21 10.23 -56.58 -0.58 -14.79 16 8 C 0.08 3.18 5.48 71.98 0.39 3.57 16 9 C -0.09 -4.25 5.53 30.59 0.17 -4.09 16 10 C 0.03 1.50 4.97 29.85 0.15 1.64 16 11 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 12 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 14 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 15 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 N -0.26 -8.35 11.74 -48.21 -0.57 -8.91 16 20 N -0.23 -5.53 3.43 -175.59 -0.60 -6.13 16 21 C 0.08 1.61 6.02 38.12 0.23 1.84 16 22 C -0.11 -2.11 9.76 22.39 0.22 -1.89 16 23 C -0.11 -1.42 9.69 22.25 0.22 -1.21 16 24 C -0.07 -0.63 5.88 -19.85 -0.12 -0.75 16 25 C -0.12 -0.41 10.01 71.24 0.71 0.30 16 26 C -0.10 -0.78 9.69 22.25 0.22 -0.56 16 27 C -0.10 -1.20 8.49 22.39 0.19 -1.01 16 28 H 0.10 0.40 7.58 -2.39 -0.02 0.39 16 29 H 0.09 0.56 7.47 -2.39 -0.02 0.54 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.06 2.85 8.14 -2.38 -0.02 2.83 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 42 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 43 H 0.09 0.04 8.08 -2.39 -0.02 0.02 16 44 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 45 H 0.15 1.16 6.57 -2.91 -0.02 1.14 16 Total: -1.00 -78.16 388.88 6.96 -71.20 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 0.98 Total: 5.66 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 5.08 Total: -15.76 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -0.88 Total: -72.69 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.25 Total: -35.75 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -78.16 6.96 -71.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777156167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.453 kcal (2) G-P(sol) polarization free energy of solvation -78.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds