Wall clock time and date at job start Tue Mar 31 2020 15:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30499 * 125.65461 * 2 1 4 4 C 1.34125 * 109.26157 * 180.29230 * 3 2 1 5 5 C 1.34673 * 108.01754 * 359.72721 * 4 3 2 6 6 N 1.35047 * 125.64944 * 179.82624 * 2 1 3 7 7 C 1.46494 * 126.39647 * 359.97438 * 6 2 1 8 8 C 1.53001 * 109.47708 * 84.71131 * 7 6 2 9 9 C 1.52995 * 109.47574 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46933 * 179.97438 * 9 8 7 11 11 O 1.45203 * 109.46695 * 180.02562 * 10 9 8 12 12 C 1.34811 * 116.99871 * 180.02562 * 11 10 9 13 13 O 1.21532 * 119.99759 * 359.97438 * 12 11 10 14 14 C 1.47289 * 119.99831 * 180.02562 * 12 11 10 15 15 C 1.39287 * 120.29017 * 356.62405 * 14 12 11 16 16 C 1.38200 * 120.08655 * 179.97438 * 15 14 12 17 17 C 1.38841 * 120.68388 * 0.02793 * 16 15 14 18 18 C 1.37600 * 120.57820 * 359.97438 * 17 16 15 19 19 C 1.40710 * 119.89087 * 359.74009 * 18 17 16 20 20 C 1.40855 * 120.33208 * 180.25747 * 19 18 17 21 21 H 1.07999 * 120.00220 * 141.98339 * 20 19 18 22 22 C 1.40298 * 119.99928 * 321.98200 * 20 19 18 23 23 N 1.30621 * 120.00189 * 173.08397 * 22 20 19 24 24 Si 1.86801 * 120.00269 * 353.08384 * 22 20 19 25 25 H 1.48495 * 109.47219 * 89.61360 * 24 22 20 26 26 H 1.48494 * 109.47150 * 209.61915 * 24 22 20 27 27 H 1.48500 * 109.46936 * 329.61295 * 24 22 20 28 28 H 1.09001 * 109.46759 * 270.17335 * 1 2 3 29 29 H 1.09000 * 109.47082 * 30.17511 * 1 2 3 30 30 H 1.08999 * 109.47406 * 150.17360 * 1 2 3 31 31 H 1.07997 * 125.99303 * 179.72624 * 4 3 2 32 32 H 1.07993 * 126.59098 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47128 * 324.71013 * 7 6 2 34 34 H 1.09005 * 109.47500 * 204.71509 * 7 6 2 35 35 H 1.09004 * 109.46922 * 59.99756 * 8 7 6 36 36 H 1.09007 * 109.46836 * 300.00184 * 8 7 6 37 37 H 1.08998 * 109.47320 * 299.99822 * 9 8 7 38 38 H 1.09004 * 109.47099 * 59.99982 * 9 8 7 39 39 H 1.08995 * 109.47536 * 299.99935 * 10 9 8 40 40 H 1.08995 * 109.46895 * 60.00659 * 10 9 8 41 41 H 1.08000 * 119.95720 * 359.95973 * 15 14 12 42 42 H 1.07994 * 119.66196 * 180.02562 * 16 15 14 43 43 H 1.07998 * 119.71208 * 179.97438 * 17 16 15 44 44 H 1.08008 * 120.05159 * 180.02562 * 18 17 16 45 45 H 0.96991 * 120.00198 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0065 5 6 3.5926 -0.6644 -0.0045 6 7 2.2941 -1.0974 0.0033 7 6 1.8425 -2.4910 0.0081 8 6 1.5583 -2.9400 -1.4267 9 6 1.0873 -4.3957 -1.4217 10 6 0.8024 -4.8444 -2.8564 11 8 0.3548 -6.2257 -2.8516 12 6 0.0604 -6.7778 -4.0458 13 8 0.1742 -6.1223 -5.0628 14 6 -0.4003 -8.1749 -4.1176 15 6 -0.4670 -8.9528 -2.9641 16 6 -0.9004 -10.2631 -3.0363 17 6 -1.2730 -10.8202 -4.2523 18 6 -1.2179 -10.0769 -5.4089 19 6 -0.7860 -8.7386 -5.3625 20 6 -0.7311 -7.9676 -6.5401 21 1 -1.0076 -6.9238 -6.5155 22 6 -0.3174 -8.5555 -7.7448 23 7 -0.3945 -7.8813 -8.8609 24 14 0.3439 -10.3025 -7.7529 25 1 -0.7775 -11.2554 -7.9518 26 1 1.3251 -10.4553 -8.8570 27 1 1.0100 -10.5857 -6.4562 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3634 -0.8915 -0.5111 31 1 4.4098 1.3410 -0.0122 32 1 4.4776 -1.2833 -0.0088 33 1 0.9327 -2.5761 0.6024 34 1 2.6187 -3.1231 0.4396 35 1 2.4680 -2.8549 -2.0210 36 1 0.7820 -2.3080 -1.8581 37 1 1.8638 -5.0274 -0.9905 38 1 0.1776 -4.4812 -0.8273 39 1 0.0257 -4.2127 -3.2873 40 1 1.7118 -4.7588 -3.4511 41 1 -0.1794 -8.5316 -2.0122 42 1 -0.9499 -10.8600 -2.1376 43 1 -1.6089 -11.8459 -4.2906 44 1 -1.5101 -10.5187 -6.3502 45 1 -0.1081 -8.2876 -9.6938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778765000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:53 Heat of formation + Delta-G solvation = -18.474919 kcal Electronic energy + Delta-G solvation = -26330.583083 eV Core-core repulsion = 22506.521657 eV Total energy + Delta-G solvation = -3824.061426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31734 -39.54232 -37.67647 -36.43233 -35.30196 -33.74608 -32.88881 -31.97499 -30.62224 -30.34888 -28.50327 -27.04845 -25.63676 -24.22087 -22.58677 -21.60606 -21.58458 -21.31407 -19.94205 -19.68948 -17.64511 -17.28753 -16.93736 -16.37931 -16.06368 -15.66893 -15.30576 -15.24073 -14.44895 -14.21184 -14.07159 -13.91314 -13.79028 -13.39282 -13.29929 -13.14446 -12.80926 -12.72928 -12.66266 -12.25373 -12.23704 -12.16985 -11.89721 -11.59880 -11.26125 -11.07754 -11.01643 -10.81887 -10.55964 -10.32173 -10.17326 -9.98906 -9.88453 -9.84004 -9.38707 -8.95671 -8.56911 -7.94932 -7.73499 -7.02971 -4.63707 1.79586 1.89723 2.47712 2.51933 2.93965 3.00703 3.09185 3.20164 3.38008 3.67999 3.86069 4.22169 4.25377 4.43126 4.45322 4.51962 4.76513 4.80729 5.03084 5.06918 5.17636 5.19147 5.22711 5.24269 5.38806 5.43015 5.49722 5.61266 5.66941 5.81871 5.86197 5.90212 5.93627 6.05753 6.07842 6.32187 6.45904 6.54462 6.66081 6.94737 6.99256 7.05148 7.23997 7.30592 7.53403 7.64855 7.89454 7.89957 8.31200 8.45513 8.66353 8.94258 9.94871 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.002145 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.393653 B =13053.412491 C =13807.107994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.205 3.795 3 N -0.496 5.496 4 C -0.031 4.031 5 C -0.058 4.058 6 N -0.455 5.455 7 C 0.104 3.896 8 C -0.133 4.133 9 C -0.114 4.114 10 C 0.070 3.930 11 O -0.371 6.371 12 C 0.501 3.499 13 O -0.502 6.502 14 C -0.238 4.238 15 C -0.021 4.021 16 C -0.255 4.255 17 C -0.060 4.060 18 C -0.225 4.225 19 C 0.118 3.882 20 C -0.397 4.397 21 H 0.116 0.884 22 C 0.078 3.922 23 N -0.790 5.790 24 Si 0.910 3.090 25 H -0.266 1.266 26 H -0.288 1.288 27 H -0.242 1.242 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 6.872 15.610 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 N -0.215 5.215 4 C -0.179 4.179 5 C -0.191 4.191 6 N -0.138 5.138 7 C -0.018 4.018 8 C -0.172 4.172 9 C -0.152 4.152 10 C -0.005 4.005 11 O -0.291 6.291 12 C 0.350 3.650 13 O -0.391 6.391 14 C -0.240 4.240 15 C -0.040 4.040 16 C -0.274 4.274 17 C -0.079 4.079 18 C -0.244 4.244 19 C 0.114 3.886 20 C -0.424 4.424 21 H 0.133 0.867 22 C -0.143 4.143 23 N -0.413 5.413 24 Si 0.736 3.264 25 H -0.192 1.192 26 H -0.215 1.215 27 H -0.165 1.165 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.186 0.814 32 H 0.190 0.810 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.944 7.858 15.022 17.406 hybrid contribution 0.812 -1.487 -0.324 1.724 sum 4.755 6.372 14.698 16.711 Atomic orbital electron populations 1.20224 0.85000 1.04263 1.03479 1.23332 0.95761 0.81404 1.05230 1.70241 1.02331 1.28429 1.20488 1.22282 0.94787 0.92829 1.07963 1.22725 0.87130 0.96916 1.12328 1.45477 1.06516 1.07446 1.54318 1.21931 1.02176 0.79040 0.98647 1.21871 1.03064 0.96601 0.95635 1.21418 1.02703 0.94447 0.96642 1.22690 0.99906 0.81333 0.96559 1.86540 1.79039 1.27765 1.35712 1.21293 0.75244 0.88247 0.80201 1.90827 1.50487 1.62976 1.34844 1.18706 1.18685 0.91071 0.95578 1.20963 0.93350 0.93397 0.96253 1.20386 1.14029 0.96169 0.96828 1.20816 0.96286 0.97657 0.93101 1.21155 1.09621 0.96151 0.97466 1.17520 0.88011 0.91055 0.92062 1.20027 1.32497 1.00318 0.89543 0.86662 1.26359 0.93478 1.00033 0.94411 1.69534 1.33257 1.38810 0.99678 0.86353 0.79400 0.81160 0.79530 1.19161 1.21474 1.16493 0.90233 0.89134 0.90612 0.81437 0.80950 0.88676 0.88602 0.90657 0.90646 0.90521 0.90456 0.91795 0.91840 0.87389 0.88170 0.88251 0.87381 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.04 36.01 0.36 -0.16 16 2 C 0.20 2.18 7.90 -155.41 -1.23 0.95 16 3 N -0.50 -6.33 11.25 -10.82 -0.12 -6.45 16 4 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 5 C -0.06 -0.53 11.58 -16.56 -0.19 -0.73 16 6 N -0.45 -4.17 2.75 -113.91 -0.31 -4.49 16 7 C 0.10 0.69 5.67 -4.04 -0.02 0.67 16 8 C -0.13 -1.06 5.54 -26.73 -0.15 -1.21 16 9 C -0.11 -1.08 5.59 -26.73 -0.15 -1.23 16 10 C 0.07 1.02 5.48 37.16 0.20 1.22 16 11 O -0.37 -6.90 9.47 -40.80 -0.39 -7.28 16 12 C 0.50 11.50 7.85 34.41 0.27 11.77 16 13 O -0.50 -13.00 13.43 -19.29 -0.26 -13.26 16 14 C -0.24 -5.58 5.92 -104.39 -0.62 -6.20 16 15 C -0.02 -0.43 9.60 -39.21 -0.38 -0.81 16 16 C -0.25 -4.91 10.03 -39.37 -0.39 -5.30 16 17 C -0.06 -1.20 10.01 -39.59 -0.40 -1.60 16 18 C -0.23 -5.14 6.97 -38.88 -0.27 -5.41 16 19 C 0.12 2.97 5.04 -106.53 -0.54 2.43 16 20 C -0.40 -10.85 8.12 -37.82 -0.31 -11.16 16 21 H 0.12 3.47 6.30 -52.49 -0.33 3.14 16 22 C 0.08 2.03 5.50 -17.29 -0.10 1.94 16 23 N -0.79 -20.94 13.92 55.57 0.77 -20.17 16 24 Si 0.91 20.15 24.49 -169.99 -4.16 15.98 16 25 H -0.27 -5.55 6.69 56.52 0.38 -5.17 16 26 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.24 -5.48 6.73 56.52 0.38 -5.10 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.46 7.34 -51.93 -0.38 0.08 16 31 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.09 0.50 7.94 -51.93 -0.41 0.09 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.64 7.64 -51.92 -0.40 0.24 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.91 7.61 -52.49 -0.40 1.51 16 42 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.11 2.41 4.91 -52.48 -0.26 2.15 16 45 H 0.29 6.86 8.29 -40.82 -0.34 6.53 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -32.09 375.92 -9.35 -41.43 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.43 Total: 3.95 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -4.11 Total: -15.37 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.34 Total: -31.11 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.65 Total: -20.55 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.16 Total: 15.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.09 -9.35 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778765000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.958 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds