Wall clock time and date at job start Tue Mar 31 2020 15:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30499 * 125.65461 * 2 1 4 4 C 1.34125 * 109.26157 * 180.29230 * 3 2 1 5 5 C 1.34673 * 108.01754 * 359.72721 * 4 3 2 6 6 N 1.35047 * 125.64944 * 179.82624 * 2 1 3 7 7 C 1.46494 * 126.39647 * 359.97438 * 6 2 1 8 8 C 1.53001 * 109.47708 * 84.71131 * 7 6 2 9 9 C 1.52995 * 109.47574 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46933 * 179.97438 * 9 8 7 11 11 O 1.45203 * 109.46695 * 180.02562 * 10 9 8 12 12 C 1.34811 * 116.99871 * 180.02562 * 11 10 9 13 13 O 1.21532 * 119.99759 * 359.97438 * 12 11 10 14 14 C 1.47289 * 119.99831 * 180.02562 * 12 11 10 15 15 C 1.39287 * 120.29017 * 356.62405 * 14 12 11 16 16 C 1.38200 * 120.08655 * 179.97438 * 15 14 12 17 17 C 1.38841 * 120.68388 * 0.02793 * 16 15 14 18 18 C 1.37600 * 120.57820 * 359.97438 * 17 16 15 19 19 C 1.40710 * 119.89087 * 359.74009 * 18 17 16 20 20 C 1.40855 * 120.33208 * 180.25747 * 19 18 17 21 21 H 1.07999 * 120.00220 * 141.98339 * 20 19 18 22 22 C 1.40298 * 119.99928 * 321.98200 * 20 19 18 23 23 N 1.30621 * 120.00189 * 173.08397 * 22 20 19 24 24 Si 1.86801 * 120.00269 * 353.08384 * 22 20 19 25 25 H 1.48495 * 109.47219 * 89.61360 * 24 22 20 26 26 H 1.48494 * 109.47150 * 209.61915 * 24 22 20 27 27 H 1.48500 * 109.46936 * 329.61295 * 24 22 20 28 28 H 1.09001 * 109.46759 * 270.17335 * 1 2 3 29 29 H 1.09000 * 109.47082 * 30.17511 * 1 2 3 30 30 H 1.08999 * 109.47406 * 150.17360 * 1 2 3 31 31 H 1.07997 * 125.99303 * 179.72624 * 4 3 2 32 32 H 1.07993 * 126.59098 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47128 * 324.71013 * 7 6 2 34 34 H 1.09005 * 109.47500 * 204.71509 * 7 6 2 35 35 H 1.09004 * 109.46922 * 59.99756 * 8 7 6 36 36 H 1.09007 * 109.46836 * 300.00184 * 8 7 6 37 37 H 1.08998 * 109.47320 * 299.99822 * 9 8 7 38 38 H 1.09004 * 109.47099 * 59.99982 * 9 8 7 39 39 H 1.08995 * 109.47536 * 299.99935 * 10 9 8 40 40 H 1.08995 * 109.46895 * 60.00659 * 10 9 8 41 41 H 1.08000 * 119.95720 * 359.95973 * 15 14 12 42 42 H 1.07994 * 119.66196 * 180.02562 * 16 15 14 43 43 H 1.07998 * 119.71208 * 179.97438 * 17 16 15 44 44 H 1.08008 * 120.05159 * 180.02562 * 18 17 16 45 45 H 0.96991 * 120.00198 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0065 5 6 3.5926 -0.6644 -0.0045 6 7 2.2941 -1.0974 0.0033 7 6 1.8425 -2.4910 0.0081 8 6 1.5583 -2.9400 -1.4267 9 6 1.0873 -4.3957 -1.4217 10 6 0.8024 -4.8444 -2.8564 11 8 0.3548 -6.2257 -2.8516 12 6 0.0604 -6.7778 -4.0458 13 8 0.1742 -6.1223 -5.0628 14 6 -0.4003 -8.1749 -4.1176 15 6 -0.4670 -8.9528 -2.9641 16 6 -0.9004 -10.2631 -3.0363 17 6 -1.2730 -10.8202 -4.2523 18 6 -1.2179 -10.0769 -5.4089 19 6 -0.7860 -8.7386 -5.3625 20 6 -0.7311 -7.9676 -6.5401 21 1 -1.0076 -6.9238 -6.5155 22 6 -0.3174 -8.5555 -7.7448 23 7 -0.3945 -7.8813 -8.8609 24 14 0.3439 -10.3025 -7.7529 25 1 -0.7775 -11.2554 -7.9518 26 1 1.3251 -10.4553 -8.8570 27 1 1.0100 -10.5857 -6.4562 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3634 -0.8915 -0.5111 31 1 4.4098 1.3410 -0.0122 32 1 4.4776 -1.2833 -0.0088 33 1 0.9327 -2.5761 0.6024 34 1 2.6187 -3.1231 0.4396 35 1 2.4680 -2.8549 -2.0210 36 1 0.7820 -2.3080 -1.8581 37 1 1.8638 -5.0274 -0.9905 38 1 0.1776 -4.4812 -0.8273 39 1 0.0257 -4.2127 -3.2873 40 1 1.7118 -4.7588 -3.4511 41 1 -0.1794 -8.5316 -2.0122 42 1 -0.9499 -10.8600 -2.1376 43 1 -1.6089 -11.8459 -4.2906 44 1 -1.5101 -10.5187 -6.3502 45 1 -0.1081 -8.2876 -9.6938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778765000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:52 Heat of formation + Delta-G solvation = -35.779645 kcal Electronic energy + Delta-G solvation = -26331.333472 eV Core-core repulsion = 22506.521657 eV Total energy + Delta-G solvation = -3824.811815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.02648 -41.24464 -39.32084 -37.60331 -36.60775 -35.56551 -33.80193 -32.61720 -32.40564 -31.99373 -29.43975 -27.75130 -27.36694 -25.33694 -24.07758 -23.11400 -22.38434 -22.30379 -21.38247 -20.61538 -19.49566 -18.60021 -18.01414 -17.62114 -17.55933 -17.00117 -16.43369 -16.27963 -15.83086 -15.53391 -15.44431 -15.25699 -14.83326 -14.52010 -14.37626 -14.33531 -13.96870 -13.84785 -13.72448 -13.38481 -13.31372 -13.15003 -13.02851 -12.84564 -12.72673 -12.58901 -12.31506 -12.25092 -12.06885 -11.89597 -11.65055 -11.40137 -11.14565 -10.95214 -10.80382 -10.57423 -9.64320 -9.49971 -9.28738 -8.89504 -6.58620 0.15877 0.80155 1.08440 1.23177 1.35539 1.45459 1.74716 1.93167 2.01540 2.08315 2.16644 2.62911 3.41879 3.59446 3.65433 3.68799 3.85468 3.97138 4.10742 4.22858 4.26360 4.30411 4.37364 4.39619 4.43439 4.47993 4.56397 4.64444 4.70030 4.71630 4.79204 4.83676 4.88635 4.93903 5.02965 5.06766 5.19703 5.25558 5.38023 5.38666 5.56605 5.65368 5.83195 5.84703 5.89293 6.20019 6.28280 6.37139 6.63309 6.69455 7.15553 7.18552 8.15799 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.002145 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.393653 B =13053.412491 C =13807.107994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.190 3.810 3 N -0.539 5.539 4 C -0.060 4.060 5 C -0.054 4.054 6 N -0.455 5.455 7 C 0.106 3.894 8 C -0.125 4.125 9 C -0.097 4.097 10 C 0.060 3.940 11 O -0.359 6.359 12 C 0.499 3.501 13 O -0.544 6.544 14 C -0.259 4.259 15 C -0.022 4.022 16 C -0.230 4.230 17 C -0.052 4.052 18 C -0.245 4.245 19 C 0.104 3.896 20 C -0.444 4.444 21 H 0.064 0.936 22 C 0.035 3.965 23 N -0.845 5.845 24 Si 0.969 3.031 25 H -0.241 1.241 26 H -0.280 1.280 27 H -0.248 1.248 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.202 0.798 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 3.495 19.468 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 N -0.260 5.260 4 C -0.207 4.207 5 C -0.187 4.187 6 N -0.138 5.138 7 C -0.015 4.015 8 C -0.164 4.164 9 C -0.135 4.135 10 C -0.014 4.014 11 O -0.278 6.278 12 C 0.350 3.650 13 O -0.436 6.436 14 C -0.262 4.262 15 C -0.040 4.040 16 C -0.248 4.248 17 C -0.070 4.070 18 C -0.263 4.263 19 C 0.100 3.900 20 C -0.473 4.473 21 H 0.082 0.918 22 C -0.179 4.179 23 N -0.471 5.471 24 Si 0.790 3.210 25 H -0.166 1.166 26 H -0.207 1.207 27 H -0.171 1.171 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.197 0.803 32 H 0.219 0.781 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.162 0.838 44 H 0.127 0.873 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.181 4.475 18.918 19.884 hybrid contribution 0.721 -0.402 -1.185 1.445 sum 4.903 4.073 17.732 18.843 Atomic orbital electron populations 1.20327 0.83260 1.04698 1.04568 1.23855 0.96932 0.81562 1.04923 1.70192 1.03556 1.30152 1.22071 1.22670 0.94742 0.94172 1.09150 1.23195 0.88048 0.96757 1.10676 1.45642 1.06363 1.08088 1.53694 1.22075 1.03931 0.77903 0.97607 1.21759 1.02320 0.95479 0.96802 1.21349 1.04103 0.95233 0.92819 1.23099 0.98917 0.79075 1.00295 1.86496 1.78383 1.29791 1.33092 1.21478 0.74440 0.88422 0.80692 1.90829 1.52022 1.64089 1.36667 1.19119 1.18740 0.91832 0.96476 1.21338 0.92708 0.93801 0.96202 1.21025 1.09930 0.95639 0.98248 1.21358 0.94141 0.99390 0.92076 1.21285 1.10512 0.95420 0.99133 1.17782 0.87813 0.92441 0.91951 1.19788 1.37117 0.98519 0.91865 0.91779 1.27129 0.93283 1.03884 0.93616 1.69591 1.36298 1.40801 1.00432 0.85482 0.79476 0.76864 0.79160 1.16574 1.20656 1.17133 0.88728 0.89642 0.89244 0.80312 0.78123 0.86679 0.86418 0.91632 0.91394 0.88919 0.88724 0.92851 0.92975 0.84209 0.83401 0.83848 0.87261 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.04 71.24 0.72 -0.25 16 2 C 0.19 3.89 7.90 138.13 1.09 4.98 16 3 N -0.54 -13.91 11.25 -188.13 -2.12 -16.03 16 4 C -0.06 -1.29 11.87 83.52 0.99 -0.30 16 5 C -0.05 -0.90 11.58 83.09 0.96 0.06 16 6 N -0.46 -7.52 2.75 -514.29 -1.42 -8.94 16 7 C 0.11 1.07 5.67 86.38 0.49 1.56 16 8 C -0.13 -1.74 5.54 30.59 0.17 -1.57 16 9 C -0.10 -1.58 5.59 30.59 0.17 -1.41 16 10 C 0.06 1.74 5.48 71.98 0.39 2.14 16 11 O -0.36 -13.07 9.47 -57.23 -0.54 -13.61 16 12 C 0.50 23.51 7.85 70.20 0.55 24.07 16 13 O -0.54 -30.19 13.43 19.73 0.26 -29.92 16 14 C -0.26 -12.06 5.92 -19.71 -0.12 -12.17 16 15 C -0.02 -0.82 9.60 22.51 0.22 -0.60 16 16 C -0.23 -7.43 10.03 22.40 0.22 -7.20 16 17 C -0.05 -1.80 10.01 22.26 0.22 -1.58 16 18 C -0.24 -10.72 6.97 22.72 0.16 -10.56 16 19 C 0.10 5.31 5.04 -21.10 -0.11 5.20 16 20 C -0.44 -26.00 8.12 23.41 0.19 -25.81 16 21 H 0.06 4.28 6.30 -2.91 -0.02 4.26 16 22 C 0.04 1.95 5.50 85.37 0.47 2.42 16 23 N -0.84 -48.10 13.92 21.89 0.30 -47.80 16 24 Si 0.97 42.02 24.49 68.60 1.68 43.70 16 25 H -0.24 -9.39 6.69 99.48 0.67 -8.72 16 26 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.25 -10.79 6.73 99.48 0.67 -10.12 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 0.94 7.34 -2.39 -0.02 0.92 16 31 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.12 0.75 7.94 -2.38 -0.02 0.73 16 34 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.07 1.07 7.64 -2.38 -0.02 1.05 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.14 4.20 7.61 -2.91 -0.02 4.18 16 42 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 43 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 44 H 0.11 4.70 4.91 -2.91 -0.01 4.68 16 45 H 0.30 14.97 8.29 -92.72 -0.77 14.20 16 Total: -1.00 -77.27 375.92 5.89 -71.38 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.91 Total: 22.25 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 6.80 Total: -21.04 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -3.23 Total: -72.76 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.28 Total: -43.54 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.68 Total: 43.70 kcal Total: -77.27 5.89 -71.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778765000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.604 kcal (2) G-P(sol) polarization free energy of solvation -77.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds