Wall clock time and date at job start Tue Mar 31 2020 15:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.47205 * 109.49734 * 2 1 4 4 N 2.60806 * 109.49626 * 0.02562 * 2 1 3 5 5 C 1.53041 * 109.50301 * 120.06562 * 2 1 3 6 6 C 1.53035 * 109.53915 * 181.34781 * 5 2 1 7 7 C 1.53191 * 109.31341 * 298.63824 * 6 5 2 8 8 N 1.46920 * 108.77943 * 54.63480 * 7 6 5 9 9 C 1.34775 * 120.63003 * 126.36418 * 8 7 6 10 10 O 1.21289 * 119.99965 * 180.02562 * 9 8 7 11 11 C 1.50695 * 120.00232 * 0.02562 * 9 8 7 12 12 C 1.50702 * 109.47220 * 179.97438 * 11 9 8 13 13 C 1.38321 * 119.96481 * 269.97390 * 12 11 9 14 14 C 1.38283 * 120.14125 * 179.97438 * 13 12 11 15 15 C 1.38114 * 120.06643 * 359.76777 * 14 13 12 16 16 C 1.38868 * 119.92979 * 0.51359 * 15 14 13 17 17 O 1.35747 * 120.06663 * 179.74389 * 16 15 14 18 18 C 1.34833 * 117.00257 * 5.22954 * 17 16 15 19 19 H 1.07999 * 120.00198 * 354.92975 * 18 17 16 20 20 C 1.38661 * 119.99840 * 174.64477 * 18 17 16 21 21 N 1.31552 * 120.00162 * 0.28041 * 20 18 17 22 22 Si 1.86797 * 119.99637 * 180.27874 * 20 18 17 23 23 H 1.48504 * 109.47263 * 90.00324 * 22 20 18 24 24 H 1.48503 * 109.47186 * 210.00015 * 22 20 18 25 25 H 1.48501 * 109.47495 * 330.00055 * 22 20 18 26 26 C 1.38080 * 119.96767 * 89.99917 * 12 11 9 27 27 C 1.46930 * 118.74012 * 306.64619 * 8 7 6 28 28 H 1.09000 * 109.46914 * 299.93224 * 1 2 3 29 29 H 1.08995 * 109.47040 * 59.93243 * 1 2 3 30 30 H 1.09001 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.45348 * 61.33089 * 5 2 1 32 32 H 1.09002 * 109.44810 * 301.37008 * 5 2 1 33 33 H 1.09000 * 109.49454 * 178.68662 * 6 5 2 34 34 H 1.09001 * 109.49982 * 58.59156 * 6 5 2 35 35 H 1.09000 * 109.58535 * 294.84696 * 7 6 5 36 36 H 1.09006 * 109.58770 * 174.42395 * 7 6 5 37 37 H 1.09000 * 109.47448 * 59.99385 * 11 9 8 38 38 H 1.09005 * 109.46728 * 299.99284 * 11 9 8 39 39 H 1.08000 * 119.92906 * 0.02791 * 13 12 11 40 40 H 1.07999 * 119.96278 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.03972 * 180.27228 * 15 14 13 42 42 H 0.96994 * 120.00175 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.03216 * 359.97438 * 26 12 11 44 44 H 1.08997 * 109.59099 * 173.13900 * 27 8 7 45 45 H 1.09001 * 109.58147 * 293.57045 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0213 1.3876 0.0000 4 7 2.4004 2.4585 0.0011 5 6 2.0409 -0.7227 1.2485 6 6 3.5709 -0.6939 1.2664 7 6 4.1060 -1.4254 0.0314 8 7 3.5053 -0.8282 -1.1691 9 6 4.2819 -0.3843 -2.1772 10 8 3.7739 0.1072 -3.1629 11 6 5.7813 -0.4985 -2.0799 12 6 6.4102 0.0654 -3.3279 13 6 6.6499 -0.7578 -4.4133 14 6 7.2264 -0.2441 -5.5605 15 6 7.5601 1.0944 -5.6275 16 6 7.3261 1.9223 -4.5374 17 8 7.6579 3.2372 -4.5983 18 6 8.1101 3.7003 -5.7811 19 1 8.2723 3.0175 -6.6020 20 6 8.3613 5.0540 -5.9453 21 7 8.1636 5.8857 -4.9454 22 14 8.9803 5.6966 -7.5864 23 1 7.8237 6.0608 -8.4436 24 1 9.8264 6.8961 -7.3610 25 1 9.7831 4.6440 -8.2593 26 6 6.7470 1.4032 -3.3865 27 6 2.0422 -0.7184 -1.2471 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5149 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6973 -1.7571 1.2353 32 1 1.6578 -0.2241 2.1388 33 1 3.9335 -1.1884 2.1676 34 1 3.9155 0.3401 1.2546 35 1 3.8387 -2.4806 0.0873 36 1 5.1903 -1.3228 -0.0130 37 1 6.0598 -1.5471 -1.9750 38 1 6.1326 0.0593 -1.2117 39 1 6.3856 -1.8039 -4.3650 40 1 7.4119 -0.8894 -6.4064 41 1 8.0063 1.4962 -6.5253 42 1 8.3396 6.8326 -5.0602 43 1 6.5596 2.0454 -2.5388 44 1 1.7652 -0.1495 -2.1346 45 1 1.6032 -1.7149 -1.2974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784744166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:52 Heat of formation + Delta-G solvation = -14.005732 kcal Electronic energy + Delta-G solvation = -27458.691706 eV Core-core repulsion = 23634.824079 eV Total energy + Delta-G solvation = -3823.867627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73521 -39.10228 -38.28388 -36.41010 -35.98964 -34.16189 -32.39286 -32.25616 -31.87758 -29.19339 -27.98071 -26.79888 -25.54136 -25.01424 -23.39865 -22.25917 -21.58668 -20.96679 -19.28248 -17.56969 -17.41138 -17.01578 -16.79946 -15.77967 -15.63869 -15.28057 -14.97807 -14.70278 -14.34914 -14.30748 -14.01419 -13.75516 -13.67946 -13.54657 -13.34751 -13.22137 -12.75660 -12.61740 -12.49961 -12.43288 -12.26840 -12.06388 -11.92405 -11.76579 -11.51223 -11.44959 -11.22881 -11.15973 -10.94075 -10.77520 -10.70018 -10.55030 -10.38065 -9.70590 -9.26358 -8.84462 -8.76436 -7.99720 -7.14246 -6.36519 -3.95706 2.13980 2.45918 2.63802 2.69095 2.76230 2.89355 3.17602 3.19558 3.23345 3.57978 4.03132 4.17630 4.27895 4.39952 4.52637 4.53534 4.75568 4.85197 4.98160 5.01534 5.09919 5.15800 5.21296 5.21735 5.28696 5.32447 5.33817 5.41027 5.48753 5.53894 5.63732 5.68937 5.72093 5.78916 5.81344 5.99503 6.23816 6.29415 6.41282 6.72590 6.98821 7.14399 7.24799 7.33483 7.43687 7.49805 7.51703 7.89950 8.08319 8.24198 9.08922 9.80456 10.81839 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.002830 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.327926 B = 9892.590554 C =10801.421990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.023 3.977 3 C 0.207 3.793 4 N -0.418 5.418 5 C -0.106 4.106 6 C -0.144 4.144 7 C 0.106 3.894 8 N -0.625 5.625 9 C 0.518 3.482 10 O -0.513 6.513 11 C -0.092 4.092 12 C -0.034 4.034 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.155 3.845 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.174 4.174 27 C 0.123 3.877 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.603 -20.029 13.494 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.018 3.982 3 C -0.112 4.112 4 N -0.092 5.092 5 C -0.145 4.145 6 C -0.182 4.182 7 C -0.017 4.017 8 N -0.361 5.361 9 C 0.307 3.693 10 O -0.386 6.386 11 C -0.131 4.131 12 C -0.035 4.035 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.250 4.250 16 C 0.102 3.898 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.193 4.193 27 C -0.001 4.001 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.252 -17.668 13.134 25.194 hybrid contribution 0.164 -0.001 -0.776 0.793 sum -12.087 -17.669 12.358 24.719 Atomic orbital electron populations 1.21834 0.90641 1.03780 1.03647 1.18688 0.96913 0.84008 0.98579 1.28844 0.93835 0.94547 0.93994 1.81301 1.07967 1.12465 1.07432 1.21643 0.95889 1.01173 0.95770 1.22024 0.95617 1.02105 0.98483 1.21787 0.99103 0.97050 0.83763 1.48163 1.06029 1.62838 1.19036 1.20816 0.89480 0.76915 0.82136 1.90764 1.75154 1.42144 1.30551 1.20617 0.90875 1.02944 0.98697 1.18661 0.98020 0.93015 0.93794 1.20324 1.08157 0.98502 0.94528 1.20670 0.97304 0.94595 0.96729 1.21173 1.09379 0.94109 1.00348 1.19265 0.91844 0.85578 0.93149 1.83981 1.71457 1.18224 1.34689 1.21319 1.44125 0.92563 0.88708 0.89123 1.25284 0.97232 0.94795 0.99267 1.70044 1.45301 1.03724 1.30832 0.85722 0.78766 0.78728 0.80252 1.19915 1.20300 1.19214 1.19941 1.06686 0.94424 0.98244 1.21536 0.80590 1.00929 0.97085 0.91239 0.91212 0.90149 0.89392 0.90555 0.89680 0.91365 0.90691 0.89121 0.88269 0.88437 0.87936 0.87468 0.85614 0.92112 0.87028 0.88096 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.44 37.16 0.31 -0.36 16 2 C 0.02 0.17 0.72 -157.39 -0.11 0.05 16 3 C 0.21 2.57 12.21 -20.76 -0.25 2.31 16 4 N -0.42 -6.89 18.54 42.15 0.78 -6.11 16 5 C -0.11 -0.50 4.69 -26.69 -0.13 -0.63 16 6 C -0.14 -0.84 5.84 -26.61 -0.16 -1.00 16 7 C 0.11 0.68 6.34 -3.71 -0.02 0.65 16 8 N -0.62 -6.45 2.68 -173.03 -0.46 -6.92 16 9 C 0.52 7.77 7.69 -10.99 -0.08 7.69 16 10 O -0.51 -10.28 15.45 5.55 0.09 -10.20 16 11 C -0.09 -1.28 4.17 -29.04 -0.12 -1.40 16 12 C -0.03 -0.65 4.37 -104.65 -0.46 -1.11 16 13 C -0.20 -3.64 9.70 -39.53 -0.38 -4.02 16 14 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 15 C -0.23 -5.39 9.17 -39.39 -0.36 -5.75 16 16 C 0.15 4.05 6.65 -39.11 -0.26 3.79 16 17 O -0.18 -5.47 9.76 0.05 0.00 -5.47 16 18 C -0.39 -11.52 9.49 30.89 0.29 -11.23 16 19 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -26.59 13.67 55.48 0.76 -25.83 16 22 Si 0.94 21.50 29.55 -169.99 -5.02 16.48 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.17 -4.03 9.65 -39.40 -0.38 -4.41 16 27 C 0.12 1.06 5.05 -3.93 -0.02 1.04 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.55 5.93 -51.93 -0.31 0.24 16 37 H 0.10 1.02 7.89 -51.93 -0.41 0.61 16 38 H 0.10 1.22 7.63 -51.93 -0.40 0.83 16 39 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.13 2.91 5.64 -52.49 -0.30 2.62 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.11 2.59 8.06 -52.49 -0.42 2.17 16 44 H 0.10 1.16 7.00 -51.93 -0.36 0.80 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -38.96 374.72 -7.04 -46.00 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.20 Total: 1.63 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.63 Total: -15.23 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 1.08 Total: -38.86 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.09 Total: -15.67 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.96 -7.04 -46.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784744166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.998 kcal (2) G-P(sol) polarization free energy of solvation -38.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds