Wall clock time and date at job start Tue Mar 31 2020 15:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.47205 * 109.49734 * 2 1 4 4 N 2.60806 * 109.49626 * 0.02562 * 2 1 3 5 5 C 1.53041 * 109.50301 * 120.06562 * 2 1 3 6 6 C 1.53035 * 109.53915 * 181.34781 * 5 2 1 7 7 C 1.53191 * 109.31341 * 298.63824 * 6 5 2 8 8 N 1.46920 * 108.77943 * 54.63480 * 7 6 5 9 9 C 1.34775 * 120.63003 * 126.36418 * 8 7 6 10 10 O 1.21289 * 119.99965 * 180.02562 * 9 8 7 11 11 C 1.50695 * 120.00232 * 0.02562 * 9 8 7 12 12 C 1.50702 * 109.47220 * 179.97438 * 11 9 8 13 13 C 1.38321 * 119.96481 * 269.97390 * 12 11 9 14 14 C 1.38283 * 120.14125 * 179.97438 * 13 12 11 15 15 C 1.38114 * 120.06643 * 359.76777 * 14 13 12 16 16 C 1.38868 * 119.92979 * 0.51359 * 15 14 13 17 17 O 1.35747 * 120.06663 * 179.74389 * 16 15 14 18 18 C 1.34833 * 117.00257 * 5.22954 * 17 16 15 19 19 H 1.07999 * 120.00198 * 354.92975 * 18 17 16 20 20 C 1.38661 * 119.99840 * 174.64477 * 18 17 16 21 21 N 1.31552 * 120.00162 * 0.28041 * 20 18 17 22 22 Si 1.86797 * 119.99637 * 180.27874 * 20 18 17 23 23 H 1.48504 * 109.47263 * 90.00324 * 22 20 18 24 24 H 1.48503 * 109.47186 * 210.00015 * 22 20 18 25 25 H 1.48501 * 109.47495 * 330.00055 * 22 20 18 26 26 C 1.38080 * 119.96767 * 89.99917 * 12 11 9 27 27 C 1.46930 * 118.74012 * 306.64619 * 8 7 6 28 28 H 1.09000 * 109.46914 * 299.93224 * 1 2 3 29 29 H 1.08995 * 109.47040 * 59.93243 * 1 2 3 30 30 H 1.09001 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.45348 * 61.33089 * 5 2 1 32 32 H 1.09002 * 109.44810 * 301.37008 * 5 2 1 33 33 H 1.09000 * 109.49454 * 178.68662 * 6 5 2 34 34 H 1.09001 * 109.49982 * 58.59156 * 6 5 2 35 35 H 1.09000 * 109.58535 * 294.84696 * 7 6 5 36 36 H 1.09006 * 109.58770 * 174.42395 * 7 6 5 37 37 H 1.09000 * 109.47448 * 59.99385 * 11 9 8 38 38 H 1.09005 * 109.46728 * 299.99284 * 11 9 8 39 39 H 1.08000 * 119.92906 * 0.02791 * 13 12 11 40 40 H 1.07999 * 119.96278 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.03972 * 180.27228 * 15 14 13 42 42 H 0.96994 * 120.00175 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.03216 * 359.97438 * 26 12 11 44 44 H 1.08997 * 109.59099 * 173.13900 * 27 8 7 45 45 H 1.09001 * 109.58147 * 293.57045 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0213 1.3876 0.0000 4 7 2.4004 2.4585 0.0011 5 6 2.0409 -0.7227 1.2485 6 6 3.5709 -0.6939 1.2664 7 6 4.1060 -1.4254 0.0314 8 7 3.5053 -0.8282 -1.1691 9 6 4.2819 -0.3843 -2.1772 10 8 3.7739 0.1072 -3.1629 11 6 5.7813 -0.4985 -2.0799 12 6 6.4102 0.0654 -3.3279 13 6 6.6499 -0.7578 -4.4133 14 6 7.2264 -0.2441 -5.5605 15 6 7.5601 1.0944 -5.6275 16 6 7.3261 1.9223 -4.5374 17 8 7.6579 3.2372 -4.5983 18 6 8.1101 3.7003 -5.7811 19 1 8.2723 3.0175 -6.6020 20 6 8.3613 5.0540 -5.9453 21 7 8.1636 5.8857 -4.9454 22 14 8.9803 5.6966 -7.5864 23 1 7.8237 6.0608 -8.4436 24 1 9.8264 6.8961 -7.3610 25 1 9.7831 4.6440 -8.2593 26 6 6.7470 1.4032 -3.3865 27 6 2.0422 -0.7184 -1.2471 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5149 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6973 -1.7571 1.2353 32 1 1.6578 -0.2241 2.1388 33 1 3.9335 -1.1884 2.1676 34 1 3.9155 0.3401 1.2546 35 1 3.8387 -2.4806 0.0873 36 1 5.1903 -1.3228 -0.0130 37 1 6.0598 -1.5471 -1.9750 38 1 6.1326 0.0593 -1.2117 39 1 6.3856 -1.8039 -4.3650 40 1 7.4119 -0.8894 -6.4064 41 1 8.0063 1.4962 -6.5253 42 1 8.3396 6.8326 -5.0602 43 1 6.5596 2.0454 -2.5388 44 1 1.7652 -0.1495 -2.1346 45 1 1.6032 -1.7149 -1.2974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784744166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:51 Heat of formation + Delta-G solvation = -41.051131 kcal Electronic energy + Delta-G solvation = -27459.864483 eV Core-core repulsion = 23634.824079 eV Total energy + Delta-G solvation = -3825.040404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63885 -40.75730 -39.48433 -38.16886 -37.05466 -34.99694 -34.37859 -33.42563 -32.86306 -30.95940 -29.15695 -27.60302 -27.25093 -26.15291 -24.07750 -23.34164 -22.97030 -22.52380 -20.41763 -19.43799 -18.76368 -18.24675 -17.83565 -16.87364 -16.79663 -16.52961 -16.16997 -16.12446 -15.83936 -15.55441 -15.31634 -15.05974 -14.75624 -14.66368 -14.41015 -14.32023 -14.06852 -14.03010 -13.63531 -13.52923 -13.17438 -13.03293 -12.98320 -12.85832 -12.74149 -12.51259 -12.50248 -12.36959 -12.25820 -12.12550 -11.94081 -11.72757 -11.46615 -11.24575 -10.91582 -10.81103 -9.68389 -9.65300 -9.01779 -8.51146 -6.20671 0.47401 0.71902 1.29591 1.40696 1.48742 1.57521 1.73614 1.75418 2.00892 2.14475 2.79401 2.84120 3.10656 3.40180 3.58524 3.72963 3.82178 3.84584 3.94257 4.05149 4.09768 4.26181 4.29231 4.36137 4.50322 4.54730 4.56840 4.59951 4.68910 4.73979 4.81135 4.88181 4.92895 5.01460 5.02065 5.08212 5.10536 5.22765 5.25808 5.32322 5.37343 5.57113 5.61555 5.68639 5.71168 5.98380 6.19149 6.35611 6.54726 6.92801 7.18390 7.75192 8.72939 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.002830 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.327926 B = 9892.590554 C =10801.421990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.023 3.977 3 C 0.232 3.768 4 N -0.508 5.508 5 C -0.101 4.101 6 C -0.145 4.145 7 C 0.096 3.904 8 N -0.615 5.615 9 C 0.511 3.489 10 O -0.580 6.580 11 C -0.090 4.090 12 C -0.026 4.026 13 C -0.176 4.176 14 C -0.070 4.070 15 C -0.246 4.246 16 C 0.111 3.889 17 O -0.239 6.239 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.028 4.028 21 N -0.925 5.925 22 Si 1.023 2.977 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.248 1.248 26 C -0.199 4.199 27 C 0.118 3.882 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.025 0.975 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.120 0.880 42 H 0.272 0.728 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.777 -25.920 14.187 32.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.018 3.982 3 C -0.085 4.085 4 N -0.183 5.183 5 C -0.139 4.139 6 C -0.183 4.183 7 C -0.024 4.024 8 N -0.348 5.348 9 C 0.301 3.699 10 O -0.459 6.459 11 C -0.129 4.129 12 C -0.026 4.026 13 C -0.194 4.194 14 C -0.088 4.088 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.146 6.146 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.224 4.224 21 N -0.564 5.564 22 Si 0.841 3.159 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.172 1.172 26 C -0.219 4.219 27 C -0.006 4.006 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.044 0.956 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.170 0.830 38 H 0.125 0.875 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.447 -23.650 13.901 30.551 hybrid contribution 0.370 1.473 -0.797 1.715 sum -13.076 -22.177 13.104 28.889 Atomic orbital electron populations 1.21900 0.88237 1.06262 1.03176 1.19202 0.98650 0.80668 0.99673 1.30145 0.91603 0.95460 0.91325 1.81311 1.11000 1.15561 1.10473 1.21764 0.94815 1.03261 0.94062 1.22067 0.96672 0.99935 0.99654 1.22226 0.99356 0.99083 0.81771 1.48252 1.06690 1.61013 1.18890 1.20941 0.90017 0.76542 0.82442 1.90748 1.76196 1.45451 1.33536 1.20739 0.90248 1.05760 0.96198 1.19222 0.95878 0.91148 0.96386 1.20989 1.04736 1.00678 0.92986 1.21181 0.95710 0.93236 0.98701 1.21309 1.10153 0.95770 0.99282 1.19867 0.93754 0.84901 0.95354 1.83942 1.74236 1.20733 1.35675 1.21878 1.44580 0.93539 0.89141 0.88006 1.26714 0.97167 0.94573 1.03965 1.70210 1.48055 1.04206 1.33911 0.84539 0.78502 0.78422 0.74392 1.18995 1.19265 1.17162 1.20160 1.08011 0.96536 0.97145 1.21788 0.79728 1.03042 0.96022 0.90724 0.92844 0.86090 0.84813 0.89853 0.86565 0.95569 0.86143 0.88787 0.83022 0.87541 0.82824 0.83168 0.86273 0.91870 0.89133 0.91875 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.44 71.98 0.61 -0.28 16 2 C 0.02 0.27 0.72 -54.05 -0.04 0.24 16 3 C 0.23 5.98 12.21 89.44 1.09 7.08 16 4 N -0.51 -18.31 18.54 20.01 0.37 -17.94 16 5 C -0.10 -0.48 4.69 30.62 0.14 -0.34 16 6 C -0.15 -1.17 5.84 30.67 0.18 -0.99 16 7 C 0.10 0.77 6.34 86.36 0.55 1.32 16 8 N -0.62 -10.97 2.68 -819.73 -2.19 -13.16 16 9 C 0.51 14.73 7.69 87.66 0.67 15.40 16 10 O -0.58 -23.78 15.45 -3.06 -0.05 -23.82 16 11 C -0.09 -2.31 4.17 29.10 0.12 -2.18 16 12 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 13 C -0.18 -5.92 9.70 22.30 0.22 -5.70 16 14 C -0.07 -2.63 10.04 22.25 0.22 -2.41 16 15 C -0.25 -11.83 9.17 22.39 0.21 -11.62 16 16 C 0.11 6.23 6.65 22.58 0.15 6.38 16 17 O -0.24 -15.89 9.76 -22.74 -0.22 -16.12 16 18 C -0.42 -26.24 9.49 67.92 0.64 -25.60 16 19 H 0.10 5.89 5.20 -2.91 -0.02 5.87 16 20 C -0.03 -1.68 5.49 84.84 0.47 -1.22 16 21 N -0.93 -61.10 13.67 21.61 0.30 -60.81 16 22 Si 1.02 45.90 29.55 68.60 2.03 47.93 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 26 C -0.20 -9.85 9.65 22.39 0.22 -9.63 16 27 C 0.12 1.71 5.05 86.22 0.44 2.15 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.03 0.44 7.14 -2.39 -0.02 0.42 16 35 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.09 0.71 5.93 -2.38 -0.01 0.70 16 37 H 0.15 2.26 7.89 -2.39 -0.02 2.24 16 38 H 0.11 2.55 7.63 -2.38 -0.02 2.53 16 39 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.12 5.75 5.64 -2.91 -0.02 5.73 16 42 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 43 H 0.09 4.69 8.06 -2.91 -0.02 4.67 16 44 H 0.06 1.46 7.00 -2.39 -0.02 1.44 16 45 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -101.45 374.72 7.04 -94.42 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 1.01 Total: 17.97 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 5.80 Total: -28.47 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -1.53 Total: -91.91 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.27 Total: -39.94 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -101.45 7.04 -94.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784744166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.364 kcal (2) G-P(sol) polarization free energy of solvation -101.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds