Wall clock time and date at job start Tue Mar 31 2020 15:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.47202 * 109.50011 * 2 1 4 4 N 2.60800 * 109.50091 * 0.02562 * 2 1 3 5 5 C 1.53044 * 109.52393 * 239.92035 * 2 1 3 6 6 C 1.53040 * 109.54058 * 178.67050 * 5 2 1 7 7 C 1.52750 * 109.38254 * 61.23717 * 6 5 2 8 8 N 1.46921 * 109.01327 * 305.58891 * 7 6 5 9 9 C 1.34777 * 120.63438 * 233.58336 * 8 7 6 10 10 O 1.21280 * 120.00044 * 179.71919 * 9 8 7 11 11 C 1.50692 * 119.99671 * 359.72137 * 9 8 7 12 12 C 1.50702 * 109.47303 * 179.97438 * 11 9 8 13 13 C 1.38329 * 119.96453 * 89.99817 * 12 11 9 14 14 C 1.38283 * 120.13944 * 180.02562 * 13 12 11 15 15 C 1.38119 * 120.06537 * 359.97438 * 14 13 12 16 16 C 1.38852 * 119.93331 * 0.02766 * 15 14 13 17 17 O 1.35760 * 120.06971 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99608 * 5.53126 * 17 16 15 19 19 H 1.08002 * 120.00242 * 354.94165 * 18 17 16 20 20 C 1.38655 * 119.99920 * 174.93915 * 18 17 16 21 21 N 1.31559 * 120.00049 * 359.73043 * 20 18 17 22 22 Si 1.86799 * 120.00322 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47104 * 60.00194 * 22 20 18 24 24 H 1.48497 * 109.47140 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46907 * 300.00573 * 22 20 18 26 26 C 1.38079 * 119.96813 * 270.27930 * 12 11 9 27 27 C 1.46929 * 118.73633 * 53.31050 * 8 7 6 28 28 H 1.08998 * 109.46998 * 299.93410 * 1 2 3 29 29 H 1.09007 * 109.47098 * 59.93443 * 1 2 3 30 30 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.45958 * 298.69569 * 5 2 1 32 32 H 1.09000 * 109.45841 * 58.64342 * 5 2 1 33 33 H 1.08997 * 109.49814 * 181.31903 * 6 5 2 34 34 H 1.08999 * 109.49381 * 301.41031 * 6 5 2 35 35 H 1.09006 * 109.50913 * 185.70612 * 7 6 5 36 36 H 1.09008 * 109.43125 * 65.43011 * 7 6 5 37 37 H 1.08999 * 109.47710 * 60.00124 * 11 9 8 38 38 H 1.09000 * 109.47748 * 299.99354 * 11 9 8 39 39 H 1.07999 * 119.93136 * 0.04582 * 13 12 11 40 40 H 1.07993 * 119.96362 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.03000 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00335 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.03456 * 359.97438 * 26 12 11 44 44 H 1.08996 * 109.58661 * 66.43369 * 27 8 7 45 45 H 1.09001 * 109.58607 * 186.71662 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0213 1.3876 0.0000 4 7 2.4006 2.4584 0.0011 5 6 2.0414 -0.7230 -1.2482 6 6 3.5715 -0.6943 -1.2655 7 6 4.1060 -1.4205 -0.0325 8 7 3.5047 -0.8282 1.1701 9 6 4.2807 -0.3843 2.1786 10 8 3.7723 0.1072 3.1639 11 6 5.7802 -0.4988 2.0819 12 6 6.4087 0.0663 3.3297 13 6 6.6474 -0.7559 4.4162 14 6 7.2234 -0.2411 5.5631 15 6 7.5627 1.0963 5.6268 16 6 7.3243 1.9241 4.5378 17 8 7.6561 3.2392 4.5976 18 6 8.3174 3.6542 5.6968 19 1 8.4876 2.9701 6.5151 20 6 8.7790 4.9592 5.7767 21 7 8.5764 5.7910 4.7778 22 14 9.6945 5.5345 7.3000 23 1 10.9159 4.7101 7.4843 24 1 10.0786 6.9598 7.1379 25 1 8.8164 5.3910 8.4889 26 6 6.7403 1.4053 3.3893 27 6 2.0413 -0.7235 1.2497 28 1 -0.3633 0.5128 0.8906 29 1 -0.3634 0.5149 -0.8895 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6977 -1.7573 -1.2352 32 1 1.6587 -0.2246 -2.1389 33 1 3.9345 -1.1888 -2.1664 34 1 3.9160 0.3397 -1.2536 35 1 5.1901 -1.3144 0.0109 36 1 3.8422 -2.4765 -0.0909 37 1 6.1320 0.0588 1.2139 38 1 6.0587 -1.5474 1.9774 39 1 6.3837 -1.8021 4.3686 40 1 7.4089 -0.8856 6.4096 41 1 8.0129 1.4976 6.5227 42 1 8.8990 6.7040 4.8338 43 1 6.5498 2.0476 2.5422 44 1 1.6057 -1.7215 1.2981 45 1 1.7632 -0.1599 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784744168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:56 Heat of formation + Delta-G solvation = -14.061523 kcal Electronic energy + Delta-G solvation = -27437.335040 eV Core-core repulsion = 23613.464993 eV Total energy + Delta-G solvation = -3823.870046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73431 -39.10066 -38.28435 -36.41118 -36.00042 -34.16135 -32.40275 -32.26508 -31.87979 -29.19266 -27.98037 -26.80485 -25.54089 -25.01271 -23.40659 -22.25691 -21.58680 -20.96593 -19.28171 -17.57158 -17.41363 -17.01690 -16.80040 -15.78546 -15.63897 -15.29301 -14.98082 -14.70391 -14.35292 -14.31351 -14.01767 -13.77189 -13.67483 -13.51656 -13.38103 -13.22969 -12.76179 -12.61355 -12.49888 -12.43098 -12.27868 -12.06430 -11.92871 -11.77093 -11.51257 -11.45018 -11.22212 -11.14915 -10.94535 -10.76587 -10.70679 -10.55838 -10.40336 -9.70929 -9.26890 -8.84934 -8.76370 -7.99643 -7.14423 -6.36612 -3.95921 2.13919 2.46054 2.63133 2.68506 2.75616 2.89113 3.17828 3.19392 3.21842 3.57871 4.03007 4.17286 4.27520 4.38681 4.52755 4.53594 4.75478 4.84861 4.98660 5.01687 5.11865 5.15648 5.17670 5.21630 5.29182 5.31956 5.33289 5.40955 5.48801 5.54662 5.63040 5.68245 5.71857 5.78788 5.81372 5.99605 6.23667 6.29092 6.41290 6.72607 6.98881 7.14015 7.24321 7.33474 7.43540 7.49251 7.51629 7.89997 8.08078 8.23594 9.08606 9.80313 10.81603 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.002771 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.973092 B =10102.312278 C =10954.863625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.022 3.978 3 C 0.207 3.793 4 N -0.418 5.418 5 C -0.106 4.106 6 C -0.144 4.144 7 C 0.106 3.894 8 N -0.625 5.625 9 C 0.518 3.482 10 O -0.513 6.513 11 C -0.092 4.092 12 C -0.034 4.034 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.155 3.845 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.174 4.174 27 C 0.123 3.877 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.270 0.730 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 -19.886 -13.261 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.018 3.982 3 C -0.112 4.112 4 N -0.092 5.092 5 C -0.145 4.145 6 C -0.182 4.182 7 C -0.017 4.017 8 N -0.361 5.361 9 C 0.307 3.693 10 O -0.387 6.387 11 C -0.131 4.131 12 C -0.035 4.035 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.250 4.250 16 C 0.102 3.898 17 O -0.083 6.083 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.193 4.193 27 C -0.001 4.001 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.106 0.894 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.822 -17.520 -12.899 25.254 hybrid contribution 0.327 -0.044 0.718 0.790 sum -12.495 -17.564 -12.181 24.759 Atomic orbital electron populations 1.21835 0.90664 1.03777 1.03636 1.18750 0.96890 0.84007 0.98561 1.28828 0.93818 0.94537 0.93984 1.81299 1.07973 1.12480 1.07436 1.21642 0.95876 1.01175 0.95772 1.21949 0.95636 1.02158 0.98505 1.21695 0.99102 0.97140 0.83760 1.48166 1.06026 1.62992 1.18886 1.20812 0.89485 0.76890 0.82122 1.90758 1.75137 1.42158 1.30610 1.20615 0.90860 1.02952 0.98721 1.18662 0.98014 0.93044 0.93785 1.20326 1.08155 0.98505 0.94511 1.20669 0.97253 0.94622 0.96761 1.21166 1.09425 0.94248 1.00160 1.19270 0.92603 0.85091 0.92870 1.83986 1.64887 1.17817 1.41618 1.21271 1.34317 0.96739 0.94445 0.89176 1.25279 0.97392 0.95014 0.98867 1.70040 1.43554 1.05705 1.30648 0.85792 0.79491 0.78083 0.80105 1.19525 1.20318 1.19535 1.19943 1.07359 0.94271 0.97730 1.21623 0.80554 1.00886 0.97053 0.91227 0.91240 0.90150 0.89394 0.90554 0.89637 0.91384 0.89121 0.90722 0.88433 0.88260 0.87935 0.87466 0.85623 0.92056 0.87032 0.89434 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.44 37.16 0.31 -0.35 16 2 C 0.02 0.16 0.72 -157.18 -0.11 0.05 16 3 C 0.21 2.56 12.22 -20.76 -0.25 2.30 16 4 N -0.42 -6.86 18.54 42.15 0.78 -6.08 16 5 C -0.11 -0.50 4.69 -26.69 -0.13 -0.62 16 6 C -0.14 -0.84 5.82 -26.84 -0.16 -1.00 16 7 C 0.11 0.68 6.31 -3.94 -0.02 0.65 16 8 N -0.62 -6.42 2.67 -173.04 -0.46 -6.89 16 9 C 0.52 7.75 7.69 -10.99 -0.08 7.66 16 10 O -0.51 -10.23 15.45 5.56 0.09 -10.14 16 11 C -0.09 -1.28 4.17 -29.04 -0.12 -1.40 16 12 C -0.03 -0.66 4.37 -104.65 -0.46 -1.12 16 13 C -0.20 -3.63 9.70 -39.53 -0.38 -4.02 16 14 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 15 C -0.23 -5.39 9.17 -39.40 -0.36 -5.75 16 16 C 0.16 4.05 6.65 -39.11 -0.26 3.79 16 17 O -0.18 -5.46 9.76 0.03 0.00 -5.46 16 18 C -0.39 -11.51 9.49 30.89 0.29 -11.22 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -26.53 13.67 55.48 0.76 -25.78 16 22 Si 0.94 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 C -0.17 -4.03 9.65 -39.39 -0.38 -4.41 16 27 C 0.12 1.05 5.09 -3.71 -0.02 1.03 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 35 H 0.09 0.55 5.94 -51.93 -0.31 0.24 16 36 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 37 H 0.10 1.23 7.62 -51.93 -0.40 0.83 16 38 H 0.10 1.03 7.90 -51.93 -0.41 0.62 16 39 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.13 2.90 5.64 -52.49 -0.30 2.61 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.11 2.59 8.06 -52.49 -0.42 2.17 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 1.15 7.00 -51.93 -0.36 0.79 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -38.85 374.73 -7.04 -45.89 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.20 Total: 1.67 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.63 Total: -15.26 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 1.08 Total: -38.74 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.09 Total: -15.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.85 -7.04 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784744168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.833 kcal (2) G-P(sol) polarization free energy of solvation -38.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds