Wall clock time and date at job start Tue Mar 31 2020 15:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.47202 * 109.50011 * 2 1 4 4 N 2.60800 * 109.50091 * 0.02562 * 2 1 3 5 5 C 1.53044 * 109.52393 * 239.92035 * 2 1 3 6 6 C 1.53040 * 109.54058 * 178.67050 * 5 2 1 7 7 C 1.52750 * 109.38254 * 61.23717 * 6 5 2 8 8 N 1.46921 * 109.01327 * 305.58891 * 7 6 5 9 9 C 1.34777 * 120.63438 * 233.58336 * 8 7 6 10 10 O 1.21280 * 120.00044 * 179.71919 * 9 8 7 11 11 C 1.50692 * 119.99671 * 359.72137 * 9 8 7 12 12 C 1.50702 * 109.47303 * 179.97438 * 11 9 8 13 13 C 1.38329 * 119.96453 * 89.99817 * 12 11 9 14 14 C 1.38283 * 120.13944 * 180.02562 * 13 12 11 15 15 C 1.38119 * 120.06537 * 359.97438 * 14 13 12 16 16 C 1.38852 * 119.93331 * 0.02766 * 15 14 13 17 17 O 1.35760 * 120.06971 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99608 * 5.53126 * 17 16 15 19 19 H 1.08002 * 120.00242 * 354.94165 * 18 17 16 20 20 C 1.38655 * 119.99920 * 174.93915 * 18 17 16 21 21 N 1.31559 * 120.00049 * 359.73043 * 20 18 17 22 22 Si 1.86799 * 120.00322 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47104 * 60.00194 * 22 20 18 24 24 H 1.48497 * 109.47140 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46907 * 300.00573 * 22 20 18 26 26 C 1.38079 * 119.96813 * 270.27930 * 12 11 9 27 27 C 1.46929 * 118.73633 * 53.31050 * 8 7 6 28 28 H 1.08998 * 109.46998 * 299.93410 * 1 2 3 29 29 H 1.09007 * 109.47098 * 59.93443 * 1 2 3 30 30 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.45958 * 298.69569 * 5 2 1 32 32 H 1.09000 * 109.45841 * 58.64342 * 5 2 1 33 33 H 1.08997 * 109.49814 * 181.31903 * 6 5 2 34 34 H 1.08999 * 109.49381 * 301.41031 * 6 5 2 35 35 H 1.09006 * 109.50913 * 185.70612 * 7 6 5 36 36 H 1.09008 * 109.43125 * 65.43011 * 7 6 5 37 37 H 1.08999 * 109.47710 * 60.00124 * 11 9 8 38 38 H 1.09000 * 109.47748 * 299.99354 * 11 9 8 39 39 H 1.07999 * 119.93136 * 0.04582 * 13 12 11 40 40 H 1.07993 * 119.96362 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.03000 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00335 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.03456 * 359.97438 * 26 12 11 44 44 H 1.08996 * 109.58661 * 66.43369 * 27 8 7 45 45 H 1.09001 * 109.58607 * 186.71662 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0213 1.3876 0.0000 4 7 2.4006 2.4584 0.0011 5 6 2.0414 -0.7230 -1.2482 6 6 3.5715 -0.6943 -1.2655 7 6 4.1060 -1.4205 -0.0325 8 7 3.5047 -0.8282 1.1701 9 6 4.2807 -0.3843 2.1786 10 8 3.7723 0.1072 3.1639 11 6 5.7802 -0.4988 2.0819 12 6 6.4087 0.0663 3.3297 13 6 6.6474 -0.7559 4.4162 14 6 7.2234 -0.2411 5.5631 15 6 7.5627 1.0963 5.6268 16 6 7.3243 1.9241 4.5378 17 8 7.6561 3.2392 4.5976 18 6 8.3174 3.6542 5.6968 19 1 8.4876 2.9701 6.5151 20 6 8.7790 4.9592 5.7767 21 7 8.5764 5.7910 4.7778 22 14 9.6945 5.5345 7.3000 23 1 10.9159 4.7101 7.4843 24 1 10.0786 6.9598 7.1379 25 1 8.8164 5.3910 8.4889 26 6 6.7403 1.4053 3.3893 27 6 2.0413 -0.7235 1.2497 28 1 -0.3633 0.5128 0.8906 29 1 -0.3634 0.5149 -0.8895 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6977 -1.7573 -1.2352 32 1 1.6587 -0.2246 -2.1389 33 1 3.9345 -1.1888 -2.1664 34 1 3.9160 0.3397 -1.2536 35 1 5.1901 -1.3144 0.0109 36 1 3.8422 -2.4765 -0.0909 37 1 6.1320 0.0588 1.2139 38 1 6.0587 -1.5474 1.9774 39 1 6.3837 -1.8021 4.3686 40 1 7.4089 -0.8856 6.4096 41 1 8.0129 1.4976 6.5227 42 1 8.8990 6.7040 4.8338 43 1 6.5498 2.0476 2.5422 44 1 1.6057 -1.7215 1.2981 45 1 1.7632 -0.1599 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784744168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:55 Heat of formation + Delta-G solvation = -40.974999 kcal Electronic energy + Delta-G solvation = -27438.502096 eV Core-core repulsion = 23613.464993 eV Total energy + Delta-G solvation = -3825.037102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63594 -40.75466 -39.47845 -38.16775 -37.05947 -34.99031 -34.37516 -33.42630 -32.87929 -30.95815 -29.15580 -27.59973 -27.24979 -26.14948 -24.07999 -23.34126 -22.96677 -22.52074 -20.41141 -19.43661 -18.76201 -18.24490 -17.83244 -16.87173 -16.79965 -16.53359 -16.16766 -16.12299 -15.84853 -15.54739 -15.30573 -15.06383 -14.75437 -14.67394 -14.40441 -14.31779 -14.07655 -14.03076 -13.63359 -13.53159 -13.17460 -13.00781 -12.97126 -12.86813 -12.73548 -12.51380 -12.47172 -12.39066 -12.26065 -12.15631 -11.93870 -11.72127 -11.46590 -11.24422 -10.90863 -10.80661 -9.68267 -9.65398 -9.01886 -8.50570 -6.20360 0.47421 0.72148 1.30058 1.42441 1.47995 1.57374 1.73586 1.75370 2.01180 2.14968 2.79485 2.84564 3.12312 3.39102 3.58028 3.72247 3.81954 3.84457 3.94338 4.05186 4.10298 4.26246 4.29222 4.36133 4.50453 4.54794 4.56870 4.60067 4.68893 4.74169 4.81336 4.88441 4.92884 5.01571 5.02081 5.08221 5.10512 5.22831 5.25874 5.32488 5.37391 5.57107 5.61634 5.68686 5.71196 5.98544 6.19217 6.35462 6.54804 6.93079 7.18193 7.75407 8.73216 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.002771 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.973092 B =10102.312278 C =10954.863625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.022 3.978 3 C 0.232 3.768 4 N -0.508 5.508 5 C -0.101 4.101 6 C -0.145 4.145 7 C 0.096 3.904 8 N -0.615 5.615 9 C 0.512 3.488 10 O -0.580 6.580 11 C -0.091 4.091 12 C -0.026 4.026 13 C -0.176 4.176 14 C -0.070 4.070 15 C -0.246 4.246 16 C 0.111 3.889 17 O -0.239 6.239 18 C -0.417 4.417 19 H 0.103 0.897 20 C -0.027 4.027 21 N -0.926 5.926 22 Si 1.023 2.977 23 H -0.253 1.253 24 H -0.270 1.270 25 H -0.258 1.258 26 C -0.199 4.199 27 C 0.118 3.882 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.025 0.975 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.120 0.880 42 H 0.273 0.727 43 H 0.090 0.910 44 H 0.138 0.862 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.194 -25.787 -13.985 32.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.018 3.982 3 C -0.085 4.085 4 N -0.183 5.183 5 C -0.139 4.139 6 C -0.183 4.183 7 C -0.024 4.024 8 N -0.349 5.349 9 C 0.301 3.699 10 O -0.459 6.459 11 C -0.130 4.130 12 C -0.026 4.026 13 C -0.194 4.194 14 C -0.088 4.088 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.146 6.146 18 C -0.492 4.492 19 H 0.120 0.880 20 C -0.224 4.224 21 N -0.564 5.564 22 Si 0.842 3.158 23 H -0.177 1.177 24 H -0.195 1.195 25 H -0.182 1.182 26 C -0.219 4.219 27 C -0.005 4.005 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.044 0.956 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.156 0.844 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.877 -23.511 -13.694 30.542 hybrid contribution 0.465 1.441 0.759 1.694 sum -13.412 -22.070 -12.935 28.884 Atomic orbital electron populations 1.21899 0.88258 1.06255 1.03168 1.19261 0.98630 0.80685 0.99646 1.30124 0.91593 0.95445 0.91327 1.81309 1.10996 1.15567 1.10464 1.21762 0.94785 1.03267 0.94084 1.21994 0.96708 0.99978 0.99659 1.22129 0.99320 0.99197 0.81796 1.48254 1.06703 1.61162 1.18737 1.20924 0.89991 0.76537 0.82442 1.90743 1.76161 1.45426 1.33565 1.20737 0.90290 1.05735 0.96204 1.19224 0.95890 0.91155 0.96378 1.20990 1.04745 1.00680 0.92977 1.21182 0.95659 0.93260 0.98730 1.21304 1.10206 0.95889 0.99111 1.19871 0.94374 0.84570 0.95057 1.83947 1.67398 1.20433 1.42809 1.21841 1.34788 0.97702 0.94918 0.88007 1.26714 0.98132 0.94630 1.02881 1.70210 1.46124 1.06318 1.33753 0.84599 0.78320 0.77785 0.75143 1.17658 1.19475 1.18191 1.20162 1.08672 0.96374 0.96675 1.21878 0.79654 1.03016 0.95998 0.92834 0.90740 0.86103 0.84822 0.89854 0.86537 0.95591 0.88836 0.86174 0.87588 0.83048 0.82828 0.83158 0.86249 0.91850 0.89159 0.84437 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.44 71.98 0.61 -0.27 16 2 C 0.02 0.27 0.72 -53.91 -0.04 0.23 16 3 C 0.23 5.96 12.22 89.44 1.09 7.05 16 4 N -0.51 -18.21 18.54 20.01 0.37 -17.84 16 5 C -0.10 -0.47 4.69 30.62 0.14 -0.33 16 6 C -0.15 -1.17 5.82 30.52 0.18 -0.99 16 7 C 0.10 0.77 6.31 86.22 0.54 1.32 16 8 N -0.62 -10.92 2.67 -819.76 -2.19 -13.11 16 9 C 0.51 14.69 7.69 87.65 0.67 15.36 16 10 O -0.58 -23.61 15.45 -3.03 -0.05 -23.66 16 11 C -0.09 -2.32 4.17 29.10 0.12 -2.20 16 12 C -0.03 -0.97 4.37 -19.88 -0.09 -1.06 16 13 C -0.18 -5.93 9.70 22.30 0.22 -5.71 16 14 C -0.07 -2.63 10.04 22.25 0.22 -2.41 16 15 C -0.25 -11.83 9.17 22.39 0.21 -11.62 16 16 C 0.11 6.23 6.65 22.58 0.15 6.38 16 17 O -0.24 -15.91 9.76 -22.81 -0.22 -16.13 16 18 C -0.42 -26.25 9.49 67.92 0.64 -25.61 16 19 H 0.10 5.86 5.20 -2.91 -0.02 5.84 16 20 C -0.03 -1.63 5.49 84.83 0.47 -1.17 16 21 N -0.93 -60.93 13.67 21.61 0.30 -60.63 16 22 Si 1.02 45.63 29.55 68.60 2.03 47.66 16 23 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 C -0.20 -9.87 9.65 22.39 0.22 -9.66 16 27 C 0.12 1.70 5.09 86.36 0.44 2.14 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.13 -0.44 8.14 -2.38 -0.02 -0.46 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.03 0.43 7.14 -2.39 -0.02 0.42 16 35 H 0.09 0.72 5.94 -2.38 -0.01 0.71 16 36 H 0.12 0.04 8.14 -2.38 -0.02 0.02 16 37 H 0.11 2.55 7.62 -2.39 -0.02 2.54 16 38 H 0.15 2.28 7.90 -2.39 -0.02 2.26 16 39 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 40 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.12 5.75 5.64 -2.91 -0.02 5.73 16 42 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 43 H 0.09 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 1.45 7.00 -2.39 -0.02 1.43 16 Total: -1.00 -101.12 374.73 7.04 -94.08 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.01 Total: 18.17 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 5.80 Total: -28.54 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -1.52 Total: -91.58 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.27 Total: -39.79 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -101.12 7.04 -94.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784744168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.104 kcal (2) G-P(sol) polarization free energy of solvation -101.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds