Wall clock time and date at job start Tue Mar 31 2020 15:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47197 * 109.52389 * 2 1 4 4 N 2.60801 * 109.52350 * 0.02562 * 2 1 3 5 5 C 1.53036 * 109.49978 * 239.91661 * 2 1 3 6 6 C 1.53042 * 109.53669 * 178.68455 * 5 2 1 7 7 C 1.52759 * 109.38571 * 61.24151 * 6 5 2 8 8 N 1.46922 * 109.00515 * 305.58563 * 7 6 5 9 9 C 1.34776 * 120.63362 * 233.58195 * 8 7 6 10 10 O 1.21280 * 120.00295 * 179.72350 * 9 8 7 11 11 C 1.50705 * 119.99601 * 359.97438 * 9 8 7 12 12 C 1.50702 * 109.46932 * 179.72027 * 11 9 8 13 13 C 1.38302 * 119.93535 * 269.72779 * 12 11 9 14 14 C 1.38095 * 120.06711 * 179.72901 * 13 12 11 15 15 C 1.38873 * 119.93053 * 0.54398 * 14 13 12 16 16 O 1.35761 * 120.06814 * 179.75119 * 15 14 13 17 17 C 1.34825 * 117.00140 * 174.44524 * 16 15 14 18 18 H 1.08000 * 119.99720 * 5.05685 * 17 16 15 19 19 C 1.38655 * 120.00141 * 185.05682 * 17 16 15 20 20 N 1.31561 * 119.99628 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47411 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47303 * 120.00300 * 21 19 17 24 24 H 1.48509 * 109.47026 * 239.99634 * 21 19 17 25 25 C 1.38881 * 119.86620 * 359.73163 * 15 14 13 26 26 C 1.38096 * 119.92462 * 359.97438 * 25 15 14 27 27 C 1.46931 * 118.73849 * 53.31453 * 8 7 6 28 28 H 1.08995 * 109.47412 * 299.91821 * 1 2 3 29 29 H 1.09001 * 109.46764 * 59.92302 * 1 2 3 30 30 H 1.09003 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46164 * 298.69960 * 5 2 1 32 32 H 1.09000 * 109.45883 * 58.67825 * 5 2 1 33 33 H 1.09001 * 109.49620 * 181.31594 * 6 5 2 34 34 H 1.08994 * 109.49652 * 301.41024 * 6 5 2 35 35 H 1.08998 * 109.50764 * 185.70724 * 7 6 5 36 36 H 1.08999 * 109.43237 * 65.42113 * 7 6 5 37 37 H 1.08998 * 109.47087 * 299.72435 * 11 9 8 38 38 H 1.09002 * 109.46658 * 59.72565 * 11 9 8 39 39 H 1.07998 * 119.96040 * 0.02562 * 13 12 11 40 40 H 1.08005 * 120.03195 * 180.27512 * 14 13 12 41 41 H 0.96998 * 119.99349 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.03253 * 180.02562 * 25 15 14 43 43 H 1.08001 * 119.96206 * 179.97438 * 26 25 15 44 44 H 1.08994 * 109.59234 * 66.42667 * 27 8 7 45 45 H 1.09002 * 109.58546 * 186.71138 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0219 1.3873 0.0000 4 7 2.4016 2.4581 0.0011 5 6 2.0408 -0.7231 -1.2483 6 6 3.5709 -0.6950 -1.2658 7 6 4.1055 -1.4215 -0.0330 8 7 3.5046 -0.8290 1.1697 9 6 4.2810 -0.3854 2.1780 10 8 3.7730 0.1063 3.1634 11 6 5.7808 -0.4953 2.0786 12 6 6.4098 0.0741 3.3241 13 6 6.7480 1.4141 3.3757 14 6 7.3194 1.9400 4.5176 15 6 7.5648 1.1193 5.6107 16 8 8.1310 1.6322 6.7329 17 6 8.2361 0.8100 7.7963 18 1 7.9533 -0.2284 7.7059 19 6 8.7073 1.2976 9.0057 20 7 9.0514 2.5626 9.1158 21 14 8.8536 0.1582 10.4787 22 1 8.4057 -1.2050 10.0965 23 1 10.2685 0.1075 10.9268 24 1 8.0023 0.6667 11.5843 25 6 7.2293 -0.2272 5.5538 26 6 6.6526 -0.7457 4.4111 27 6 2.0412 -0.7238 1.2497 28 1 -0.3634 0.5125 0.8907 29 1 -0.3633 0.5150 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6968 -1.7574 -1.2352 32 1 1.6584 -0.2244 -2.1388 33 1 3.9335 -1.1897 -2.1669 34 1 3.9159 0.3388 -1.2540 35 1 5.1895 -1.3158 0.0102 36 1 3.8412 -2.4774 -0.0913 37 1 6.0623 -1.5433 1.9758 38 1 6.1289 0.0615 1.2086 39 1 6.5606 2.0509 2.5238 40 1 7.5792 2.9875 4.5590 41 1 9.3814 2.9035 9.9618 42 1 7.4186 -0.8678 6.4024 43 1 6.3918 -1.7928 4.3660 44 1 1.6052 -1.7215 1.2981 45 1 1.7636 -0.1600 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784747258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:02 Heat of formation + Delta-G solvation = -14.954784 kcal Electronic energy + Delta-G solvation = -27209.665444 eV Core-core repulsion = 23385.756663 eV Total energy + Delta-G solvation = -3823.908781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76196 -39.10823 -38.32539 -36.45816 -36.06880 -34.20820 -32.46019 -32.32915 -31.31211 -30.09456 -27.81954 -26.69185 -25.58884 -24.79101 -23.44982 -22.27712 -21.91668 -20.81205 -19.17634 -17.92825 -17.45042 -17.08416 -16.83692 -15.91282 -15.63968 -15.30763 -14.84883 -14.54884 -14.39337 -14.27625 -14.04229 -13.74924 -13.72625 -13.56585 -13.46003 -13.21968 -12.82959 -12.69810 -12.61020 -12.51444 -12.32737 -12.19485 -11.99061 -11.80640 -11.55240 -11.46090 -11.26004 -11.19929 -11.00933 -10.80175 -10.67791 -10.55033 -10.38031 -9.69160 -9.26832 -8.87595 -8.77603 -8.09240 -7.10849 -6.39856 -3.98285 2.28049 2.31094 2.54949 2.58122 2.72402 2.86853 3.15697 3.17439 3.22808 3.49860 4.01127 4.11306 4.21823 4.33174 4.47750 4.51702 4.70874 4.83977 4.94564 5.04875 5.10615 5.13423 5.16792 5.23008 5.27655 5.29176 5.30361 5.36859 5.37535 5.46517 5.57816 5.63696 5.69362 5.72247 5.77566 5.90499 6.25210 6.28133 6.47657 6.75805 6.96963 7.10630 7.24046 7.30924 7.37902 7.42355 7.50436 7.89598 8.05675 8.23967 9.05948 9.77143 10.78498 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024371 B = 0.002349 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.626858 B =11916.325895 C =11967.848581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.022 3.978 3 C 0.213 3.787 4 N -0.425 5.425 5 C -0.106 4.106 6 C -0.143 4.143 7 C 0.106 3.894 8 N -0.626 5.626 9 C 0.513 3.487 10 O -0.515 6.515 11 C -0.078 4.078 12 C -0.171 4.171 13 C -0.059 4.059 14 C -0.191 4.191 15 C 0.157 3.843 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.232 4.232 26 C -0.056 4.056 27 C 0.122 3.878 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.127 0.873 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 -12.972 -23.014 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 C -0.106 4.106 4 N -0.099 5.099 5 C -0.145 4.145 6 C -0.182 4.182 7 C -0.017 4.017 8 N -0.362 5.362 9 C 0.302 3.698 10 O -0.388 6.388 11 C -0.117 4.117 12 C -0.172 4.172 13 C -0.077 4.077 14 C -0.210 4.210 15 C 0.104 3.896 16 O -0.082 6.082 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.251 4.251 26 C -0.074 4.074 27 C -0.002 4.002 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.122 0.878 44 H 0.105 0.895 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.144 -10.679 -22.189 28.398 hybrid contribution -0.117 -0.939 0.646 1.146 sum -14.262 -11.619 -21.543 28.328 Atomic orbital electron populations 1.21839 0.90637 1.03869 1.03603 1.18768 0.96915 0.83960 0.98650 1.28832 0.93562 0.94496 0.93678 1.81247 1.08336 1.12518 1.07773 1.21646 0.95891 1.01249 0.95713 1.21946 0.95627 1.02012 0.98574 1.21681 0.99092 0.97161 0.83738 1.48220 1.05957 1.63084 1.18950 1.21118 0.89905 0.76787 0.81969 1.90747 1.75219 1.42296 1.30520 1.20434 0.90209 1.02560 0.98528 1.18634 1.08682 0.94478 0.95451 1.20396 0.96965 0.93860 0.96526 1.20150 1.08336 0.99382 0.93133 1.19375 0.90446 0.91641 0.88189 1.83980 1.67027 1.39552 1.17665 1.21378 1.45180 0.92824 0.87249 0.89035 1.25294 0.96550 0.96725 0.98049 1.70057 1.40473 1.13208 1.26133 0.85645 0.78260 0.79331 0.80166 1.19105 1.20179 1.20166 1.21101 1.08602 0.95780 0.99664 1.20487 0.96583 0.97924 0.92401 1.21620 0.80763 1.00902 0.96918 0.91223 0.91256 0.90092 0.89345 0.90583 0.89671 0.91518 0.89123 0.90779 0.88888 0.89149 0.87579 0.86578 0.92130 0.85559 0.87815 0.89463 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 8.44 37.16 0.31 -0.26 16 2 C 0.02 0.14 0.72 -157.18 -0.11 0.03 16 3 C 0.21 2.34 12.22 -20.76 -0.25 2.09 16 4 N -0.42 -6.19 18.54 42.15 0.78 -5.41 16 5 C -0.11 -0.42 4.69 -26.69 -0.13 -0.55 16 6 C -0.14 -0.71 5.82 -26.83 -0.16 -0.87 16 7 C 0.11 0.61 6.32 -3.94 -0.02 0.59 16 8 N -0.63 -6.03 2.67 -173.03 -0.46 -6.50 16 9 C 0.51 7.28 7.69 -10.98 -0.08 7.20 16 10 O -0.51 -9.90 15.45 5.56 0.09 -9.82 16 11 C -0.08 -1.01 4.18 -29.03 -0.12 -1.13 16 12 C -0.17 -3.11 4.38 -104.57 -0.46 -3.56 16 13 C -0.06 -1.17 9.69 -39.61 -0.38 -1.55 16 14 C -0.19 -4.37 9.99 -39.40 -0.39 -4.77 16 15 C 0.16 4.03 6.65 -39.11 -0.26 3.77 16 16 O -0.18 -5.33 9.76 0.03 0.00 -5.33 16 17 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 18 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -26.08 13.67 55.48 0.76 -25.32 16 21 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 25 C -0.23 -5.34 9.17 -39.40 -0.36 -5.70 16 26 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 27 C 0.12 0.98 5.09 -3.71 -0.02 0.96 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.50 7.14 -51.93 -0.37 0.13 16 35 H 0.09 0.49 5.93 -51.93 -0.31 0.18 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 38 H 0.09 1.00 7.62 -51.93 -0.40 0.60 16 39 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.13 2.88 5.64 -52.48 -0.30 2.59 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 1.10 7.00 -51.93 -0.36 0.73 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -37.80 374.72 -7.04 -44.84 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.20 Total: 1.01 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.63 Total: -15.24 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 1.08 Total: -37.22 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.09 Total: -15.14 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.80 -7.04 -44.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784747258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.886 kcal (2) G-P(sol) polarization free energy of solvation -37.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds