Wall clock time and date at job start Tue Mar 31 2020 15:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47197 * 109.52389 * 2 1 4 4 N 2.60801 * 109.52350 * 0.02562 * 2 1 3 5 5 C 1.53036 * 109.49978 * 239.91661 * 2 1 3 6 6 C 1.53042 * 109.53669 * 178.68455 * 5 2 1 7 7 C 1.52759 * 109.38571 * 61.24151 * 6 5 2 8 8 N 1.46922 * 109.00515 * 305.58563 * 7 6 5 9 9 C 1.34776 * 120.63362 * 233.58195 * 8 7 6 10 10 O 1.21280 * 120.00295 * 179.72350 * 9 8 7 11 11 C 1.50705 * 119.99601 * 359.97438 * 9 8 7 12 12 C 1.50702 * 109.46932 * 179.72027 * 11 9 8 13 13 C 1.38302 * 119.93535 * 269.72779 * 12 11 9 14 14 C 1.38095 * 120.06711 * 179.72901 * 13 12 11 15 15 C 1.38873 * 119.93053 * 0.54398 * 14 13 12 16 16 O 1.35761 * 120.06814 * 179.75119 * 15 14 13 17 17 C 1.34825 * 117.00140 * 174.44524 * 16 15 14 18 18 H 1.08000 * 119.99720 * 5.05685 * 17 16 15 19 19 C 1.38655 * 120.00141 * 185.05682 * 17 16 15 20 20 N 1.31561 * 119.99628 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47411 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47303 * 120.00300 * 21 19 17 24 24 H 1.48509 * 109.47026 * 239.99634 * 21 19 17 25 25 C 1.38881 * 119.86620 * 359.73163 * 15 14 13 26 26 C 1.38096 * 119.92462 * 359.97438 * 25 15 14 27 27 C 1.46931 * 118.73849 * 53.31453 * 8 7 6 28 28 H 1.08995 * 109.47412 * 299.91821 * 1 2 3 29 29 H 1.09001 * 109.46764 * 59.92302 * 1 2 3 30 30 H 1.09003 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46164 * 298.69960 * 5 2 1 32 32 H 1.09000 * 109.45883 * 58.67825 * 5 2 1 33 33 H 1.09001 * 109.49620 * 181.31594 * 6 5 2 34 34 H 1.08994 * 109.49652 * 301.41024 * 6 5 2 35 35 H 1.08998 * 109.50764 * 185.70724 * 7 6 5 36 36 H 1.08999 * 109.43237 * 65.42113 * 7 6 5 37 37 H 1.08998 * 109.47087 * 299.72435 * 11 9 8 38 38 H 1.09002 * 109.46658 * 59.72565 * 11 9 8 39 39 H 1.07998 * 119.96040 * 0.02562 * 13 12 11 40 40 H 1.08005 * 120.03195 * 180.27512 * 14 13 12 41 41 H 0.96998 * 119.99349 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.03253 * 180.02562 * 25 15 14 43 43 H 1.08001 * 119.96206 * 179.97438 * 26 25 15 44 44 H 1.08994 * 109.59234 * 66.42667 * 27 8 7 45 45 H 1.09002 * 109.58546 * 186.71138 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0219 1.3873 0.0000 4 7 2.4016 2.4581 0.0011 5 6 2.0408 -0.7231 -1.2483 6 6 3.5709 -0.6950 -1.2658 7 6 4.1055 -1.4215 -0.0330 8 7 3.5046 -0.8290 1.1697 9 6 4.2810 -0.3854 2.1780 10 8 3.7730 0.1063 3.1634 11 6 5.7808 -0.4953 2.0786 12 6 6.4098 0.0741 3.3241 13 6 6.7480 1.4141 3.3757 14 6 7.3194 1.9400 4.5176 15 6 7.5648 1.1193 5.6107 16 8 8.1310 1.6322 6.7329 17 6 8.2361 0.8100 7.7963 18 1 7.9533 -0.2284 7.7059 19 6 8.7073 1.2976 9.0057 20 7 9.0514 2.5626 9.1158 21 14 8.8536 0.1582 10.4787 22 1 8.4057 -1.2050 10.0965 23 1 10.2685 0.1075 10.9268 24 1 8.0023 0.6667 11.5843 25 6 7.2293 -0.2272 5.5538 26 6 6.6526 -0.7457 4.4111 27 6 2.0412 -0.7238 1.2497 28 1 -0.3634 0.5125 0.8907 29 1 -0.3633 0.5150 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6968 -1.7574 -1.2352 32 1 1.6584 -0.2244 -2.1388 33 1 3.9335 -1.1897 -2.1669 34 1 3.9159 0.3388 -1.2540 35 1 5.1895 -1.3158 0.0102 36 1 3.8412 -2.4774 -0.0913 37 1 6.0623 -1.5433 1.9758 38 1 6.1289 0.0615 1.2086 39 1 6.5606 2.0509 2.5238 40 1 7.5792 2.9875 4.5590 41 1 9.3814 2.9035 9.9618 42 1 7.4186 -0.8678 6.4024 43 1 6.3918 -1.7928 4.3660 44 1 1.6052 -1.7215 1.2981 45 1 1.7636 -0.1600 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784747258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:01 Heat of formation + Delta-G solvation = -40.249364 kcal Electronic energy + Delta-G solvation = -27210.762300 eV Core-core repulsion = 23385.756663 eV Total energy + Delta-G solvation = -3825.005636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58710 -40.74399 -39.45193 -38.16224 -37.00963 -34.94785 -34.39812 -32.94115 -32.73550 -31.82275 -28.87525 -27.63231 -27.07590 -25.93810 -24.03634 -23.68137 -22.90257 -22.31728 -20.16432 -19.85597 -18.85266 -18.20074 -17.82456 -16.86712 -16.63247 -16.32751 -16.13618 -15.96437 -15.70576 -15.54038 -15.31364 -15.05272 -14.81761 -14.58698 -14.45846 -14.32227 -14.20749 -13.97223 -13.61678 -13.49757 -13.15737 -13.02697 -12.96246 -12.85837 -12.72125 -12.50323 -12.48371 -12.31243 -12.24389 -12.09931 -11.91522 -11.68273 -11.43973 -11.20695 -10.89581 -10.71648 -9.81278 -9.62087 -8.93648 -8.49070 -6.17650 0.56462 0.63071 1.32950 1.42042 1.52476 1.63463 1.75646 1.78256 2.04950 2.16507 2.80324 2.86548 3.12581 3.48112 3.61845 3.75469 3.84737 3.86797 3.99590 4.00606 4.12643 4.15104 4.32060 4.41529 4.52161 4.57579 4.59674 4.62699 4.74786 4.77088 4.83387 4.89190 4.94292 5.02668 5.03983 5.11323 5.13335 5.23662 5.26351 5.33303 5.39212 5.51429 5.61411 5.67789 5.73320 6.00679 6.17478 6.41232 6.56331 6.95214 7.25042 7.76288 8.74875 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024371 B = 0.002349 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.626858 B =11916.325895 C =11967.848581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.023 3.977 3 C 0.234 3.766 4 N -0.501 5.501 5 C -0.102 4.102 6 C -0.143 4.143 7 C 0.096 3.904 8 N -0.616 5.616 9 C 0.508 3.492 10 O -0.582 6.582 11 C -0.077 4.077 12 C -0.145 4.145 13 C -0.063 4.063 14 C -0.208 4.208 15 C 0.114 3.886 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.102 0.898 19 C -0.026 4.026 20 N -0.923 5.923 21 Si 1.022 2.978 22 H -0.250 1.250 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.240 4.240 26 C -0.055 4.055 27 C 0.117 3.883 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.032 0.968 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.273 0.727 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.130 0.870 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.560 -17.884 -26.392 35.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.019 3.981 3 C -0.083 4.083 4 N -0.177 5.177 5 C -0.141 4.141 6 C -0.181 4.181 7 C -0.024 4.024 8 N -0.350 5.350 9 C 0.298 3.702 10 O -0.461 6.461 11 C -0.116 4.116 12 C -0.146 4.146 13 C -0.081 4.081 14 C -0.228 4.228 15 C 0.063 3.937 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.120 0.880 19 C -0.223 4.223 20 N -0.562 5.562 21 Si 0.841 3.159 22 H -0.173 1.173 23 H -0.190 1.190 24 H -0.195 1.195 25 C -0.259 4.259 26 C -0.073 4.073 27 C -0.007 4.007 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.146 0.854 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.149 0.851 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.163 0.837 44 H 0.148 0.852 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.073 -15.637 -25.690 34.100 hybrid contribution 0.280 0.507 1.283 1.408 sum -15.793 -15.130 -24.407 32.772 Atomic orbital electron populations 1.21900 0.88551 1.06063 1.03204 1.19181 0.98418 0.81076 0.99441 1.29949 0.91659 0.95284 0.91394 1.81252 1.10964 1.15098 1.10370 1.21759 0.95096 1.03049 0.94156 1.21973 0.96400 1.00254 0.99443 1.22104 0.99488 0.98921 0.81938 1.48280 1.06557 1.61282 1.18875 1.21189 0.90432 0.76441 0.82172 1.90745 1.76273 1.45665 1.33388 1.20564 0.89498 1.05233 0.96335 1.19260 1.04929 0.93475 0.96960 1.20773 0.95942 0.95353 0.96039 1.20376 1.09223 0.99186 0.93966 1.19883 0.92316 0.93437 0.88022 1.83944 1.70014 1.41033 1.19116 1.21900 1.45752 0.93485 0.87875 0.88032 1.26676 0.95746 0.98662 1.01221 1.70209 1.42866 1.15766 1.27322 0.84486 0.78758 0.77391 0.75254 1.17274 1.18990 1.19456 1.21253 1.08949 0.94658 1.01086 1.20937 0.95061 1.00118 0.91171 1.21832 0.79984 1.02734 0.96104 0.92807 0.90611 0.86554 0.85412 0.89740 0.86710 0.94876 0.88467 0.87006 0.84564 0.86539 0.85065 0.87462 0.91827 0.86051 0.83728 0.85228 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.44 71.98 0.61 -0.05 16 2 C 0.02 0.23 0.72 -53.91 -0.04 0.19 16 3 C 0.23 5.01 12.22 89.44 1.09 6.10 16 4 N -0.50 -15.07 18.54 20.01 0.37 -14.70 16 5 C -0.10 -0.27 4.69 30.62 0.14 -0.13 16 6 C -0.14 -0.72 5.82 30.53 0.18 -0.54 16 7 C 0.10 0.56 6.32 86.22 0.54 1.11 16 8 N -0.62 -9.55 2.67 -819.73 -2.19 -11.74 16 9 C 0.51 13.11 7.69 87.66 0.67 13.78 16 10 O -0.58 -22.19 15.45 -3.03 -0.05 -22.23 16 11 C -0.08 -1.70 4.18 29.10 0.12 -1.58 16 12 C -0.15 -4.98 4.38 -19.83 -0.09 -5.06 16 13 C -0.06 -2.48 9.69 22.25 0.22 -2.26 16 14 C -0.21 -10.09 9.99 22.39 0.22 -9.87 16 15 C 0.11 6.19 6.65 22.58 0.15 6.34 16 16 O -0.23 -15.07 9.76 -22.81 -0.22 -15.29 16 17 C -0.41 -25.40 9.49 67.92 0.64 -24.76 16 18 H 0.10 5.72 5.20 -2.91 -0.02 5.71 16 19 C -0.03 -1.55 5.49 84.83 0.47 -1.08 16 20 N -0.92 -59.16 13.67 21.61 0.30 -58.87 16 21 Si 1.02 44.61 29.55 68.60 2.03 46.64 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 C -0.24 -11.30 9.17 22.39 0.21 -11.10 16 26 C -0.05 -2.04 9.69 22.25 0.22 -1.83 16 27 C 0.12 1.50 5.09 86.36 0.44 1.94 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.13 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.03 0.41 7.14 -2.39 -0.02 0.39 16 35 H 0.10 0.47 5.93 -2.39 -0.01 0.46 16 36 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.14 1.91 7.90 -2.39 -0.02 1.89 16 38 H 0.12 2.04 7.62 -2.39 -0.02 2.02 16 39 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 41 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 42 H 0.12 5.71 5.64 -2.91 -0.02 5.69 16 43 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 44 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 1.35 7.00 -2.39 -0.02 1.34 16 Total: -1.00 -95.25 374.72 7.04 -88.21 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.01 Total: 16.79 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 5.80 Total: -28.80 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.52 Total: -85.31 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.27 Total: -37.53 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -95.25 7.04 -88.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784747258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.962 kcal (2) G-P(sol) polarization free energy of solvation -95.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds