Wall clock time and date at job start Tue Mar 31 2020 15:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30843 * 125.89936 * 2 1 4 4 N 1.40080 * 108.20386 * 180.02562 * 3 2 1 5 5 H 0.97013 * 126.03477 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92903 * 359.75938 * 4 3 2 7 7 C 1.50699 * 126.12881 * 180.24110 * 6 4 3 8 8 C 1.35311 * 107.74518 * 0.38752 * 6 4 3 9 9 C 1.50702 * 126.04154 * 179.87830 * 8 6 4 10 10 H 1.08997 * 109.47016 * 359.71154 * 9 8 6 11 11 C 1.52997 * 109.47215 * 119.71641 * 9 8 6 12 12 C 1.50706 * 109.46849 * 239.71331 * 9 8 6 13 13 O 1.20827 * 120.00007 * 359.97438 * 12 9 8 14 14 O 1.34228 * 119.99869 * 179.97438 * 12 9 8 15 15 C 1.45193 * 116.99977 * 180.02562 * 14 12 9 16 16 C 1.50703 * 109.47034 * 180.02562 * 15 14 12 17 17 C 1.38635 * 119.74806 * 269.72519 * 16 15 14 18 18 C 1.37615 * 120.24712 * 179.72224 * 17 16 15 19 19 C 1.40721 * 119.74494 * 0.56988 * 18 17 16 20 20 C 1.41394 * 120.24511 * 179.68162 * 19 18 17 21 21 H 1.07995 * 120.00017 * 204.40679 * 20 19 18 22 22 C 1.39941 * 119.99821 * 24.40304 * 20 19 18 23 23 N 1.30823 * 120.00521 * 17.86102 * 22 20 19 24 24 Si 1.86802 * 119.99977 * 197.85560 * 22 20 19 25 25 H 1.48500 * 109.46905 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47243 * 120.00475 * 24 22 20 27 27 H 1.48506 * 109.47381 * 240.00184 * 24 22 20 28 28 C 1.40717 * 119.51259 * 359.70832 * 19 18 17 29 29 C 1.37619 * 119.74137 * 359.97438 * 28 19 18 30 30 H 1.09001 * 109.47158 * 269.97781 * 1 2 3 31 31 H 1.09003 * 109.47401 * 29.97616 * 1 2 3 32 32 H 1.08998 * 109.47451 * 149.97639 * 1 2 3 33 33 H 1.08999 * 109.47201 * 270.17395 * 7 6 4 34 34 H 1.09002 * 109.47012 * 30.17303 * 7 6 4 35 35 H 1.09002 * 109.47328 * 150.17210 * 7 6 4 36 36 H 1.08996 * 109.46980 * 179.97438 * 11 9 8 37 37 H 1.09007 * 109.46890 * 299.99936 * 11 9 8 38 38 H 1.08997 * 109.47526 * 59.99825 * 11 9 8 39 39 H 1.09006 * 109.47155 * 300.00067 * 15 14 12 40 40 H 1.09003 * 109.47361 * 59.99974 * 15 14 12 41 41 H 1.08000 * 119.87465 * 359.97438 * 17 16 15 42 42 H 1.08000 * 120.13241 * 180.27934 * 18 17 16 43 43 H 0.97002 * 120.00609 * 180.02562 * 23 22 20 44 44 H 1.07994 * 120.13193 * 179.97438 * 28 19 18 45 45 H 1.08001 * 119.87501 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8350 -1.5989 0.0109 8 6 2.3272 -1.1330 -0.0006 9 6 1.8599 -2.5658 -0.0003 10 1 2.7243 -3.2298 -0.0005 11 6 1.0164 -2.8269 1.2492 12 6 1.0284 -2.8232 -1.2305 13 8 0.8347 -1.9343 -2.0257 14 8 0.5030 -4.0400 -1.4429 15 6 -0.2864 -4.2158 -2.6487 16 6 -0.7906 -5.6344 -2.7167 17 6 -0.0323 -6.6042 -3.3543 18 6 -0.4802 -7.9038 -3.4174 19 6 -1.7185 -8.2443 -2.8421 20 6 -2.1920 -9.5750 -2.9066 21 1 -3.2512 -9.7752 -2.8398 22 6 -1.2882 -10.6327 -3.0572 23 7 -0.0198 -10.4522 -2.7923 24 14 -1.8927 -12.3026 -3.6364 25 1 -3.3586 -12.2456 -3.8671 26 1 -1.2066 -12.6657 -4.9023 27 1 -1.5935 -13.3240 -2.6007 28 6 -2.4824 -7.2505 -2.2025 29 6 -2.0116 -5.9586 -2.1457 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 5.1338 -1.8132 -1.0152 34 1 5.6489 -1.0902 0.5276 35 1 4.6053 -2.5322 0.5249 36 1 0.6781 -3.8630 1.2492 37 1 1.6178 -2.6406 2.1390 38 1 0.1520 -2.1628 1.2494 39 1 -1.1334 -3.5299 -2.6317 40 1 0.3323 -4.0075 -3.5217 41 1 0.9153 -6.3394 -3.7996 42 1 0.1141 -8.6588 -3.9107 43 1 0.6068 -11.1852 -2.8971 44 1 -3.4343 -7.5006 -1.7580 45 1 -2.5963 -5.1940 -1.6557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786328186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:13 Heat of formation + Delta-G solvation = -13.119231 kcal Electronic energy + Delta-G solvation = -27041.191309 eV Core-core repulsion = 23217.362124 eV Total energy + Delta-G solvation = -3823.829186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66232 -39.93773 -37.68082 -36.05703 -34.47441 -33.84745 -33.48401 -30.89804 -30.37097 -29.35586 -28.14066 -27.25974 -26.92724 -24.75444 -23.56266 -21.21499 -21.06021 -20.29917 -20.01755 -19.15807 -17.64910 -17.38526 -16.98806 -16.09830 -15.91028 -15.37030 -15.10921 -14.61941 -14.24998 -13.86440 -13.80518 -13.73079 -13.48376 -13.14773 -12.94206 -12.73415 -12.63009 -12.56991 -12.33244 -12.21423 -12.01630 -11.88791 -11.75731 -11.63851 -11.44236 -11.17683 -10.97700 -10.81053 -10.49029 -10.41670 -10.10757 -9.98092 -9.66457 -9.46234 -9.31795 -9.21694 -8.55196 -7.55096 -7.43632 -6.86072 -4.45492 1.69032 2.39554 2.55420 2.64314 2.70478 2.99971 3.01438 3.03967 3.08542 3.52632 3.86242 4.41151 4.49608 4.52984 4.77449 4.85503 5.03326 5.11797 5.22431 5.30042 5.35811 5.54823 5.59366 5.61225 5.63980 5.70373 5.72844 5.78640 5.94599 5.96626 5.98685 6.13599 6.17176 6.26944 6.32716 6.57294 6.87789 6.96438 6.98437 7.14194 7.19693 7.27683 7.52820 7.59072 7.75518 7.96970 8.02511 8.20119 8.20477 8.55057 8.79644 8.87862 10.07684 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.002287 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.376193 B =12242.492849 C =12735.435905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.114 3.886 3 N -0.301 5.301 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.097 3.903 7 C -0.097 4.097 8 C -0.221 4.221 9 C -0.004 4.004 10 H 0.109 0.891 11 C -0.143 4.143 12 C 0.457 3.543 13 O -0.510 6.510 14 O -0.348 6.348 15 C 0.136 3.864 16 C -0.234 4.234 17 C -0.076 4.076 18 C -0.171 4.171 19 C 0.118 3.882 20 C -0.456 4.456 21 H 0.080 0.920 22 C 0.075 3.925 23 N -0.785 5.785 24 Si 0.909 3.091 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.274 1.274 28 C -0.230 4.230 29 C -0.064 4.064 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.282 0.718 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.209 13.547 6.813 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 N -0.124 5.124 4 N -0.186 5.186 5 H 0.280 0.720 6 C -0.032 4.032 7 C -0.156 4.156 8 C -0.232 4.232 9 C -0.024 4.024 10 H 0.127 0.873 11 C -0.200 4.200 12 C 0.300 3.700 13 O -0.398 6.398 14 O -0.265 6.265 15 C 0.064 3.936 16 C -0.235 4.235 17 C -0.095 4.095 18 C -0.190 4.190 19 C 0.115 3.885 20 C -0.485 4.485 21 H 0.098 0.902 22 C -0.144 4.144 23 N -0.410 5.410 24 Si 0.733 3.267 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.250 4.250 29 C -0.082 4.082 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.363 14.921 6.556 18.319 hybrid contribution 0.363 -1.242 -0.403 1.356 sum 8.727 13.679 6.153 17.353 Atomic orbital electron populations 1.20336 0.86904 1.04130 1.02356 1.22054 0.96848 0.89748 0.96617 1.77289 0.86297 1.22193 1.26646 1.46065 1.07404 1.04571 1.60566 0.71976 1.20794 0.96601 0.85165 1.00600 1.20534 0.92777 0.98498 1.03781 1.19104 0.91399 0.94511 1.18200 1.19159 0.98277 0.92960 0.92052 0.87310 1.21811 0.99722 1.03306 0.95184 1.23593 0.78192 0.81048 0.87201 1.90621 1.57406 1.45434 1.46375 1.86715 1.61929 1.32285 1.45557 1.21696 0.92574 0.95871 0.83453 1.18689 0.98389 0.92808 1.13603 1.20535 0.96948 0.93466 0.98513 1.21292 0.99124 0.94331 1.04233 1.17688 0.91132 0.92608 0.87072 1.19699 0.94824 0.90650 1.43318 0.90162 1.25965 0.94453 1.01492 0.92477 1.69834 1.03669 1.34082 1.33408 0.86251 0.80469 0.80841 0.79148 1.18298 1.19615 1.19890 1.20964 1.02129 0.93516 1.08345 1.20387 0.94852 0.95622 0.97343 0.90693 0.90931 0.89900 0.89865 0.90890 0.89225 0.90508 0.91396 0.91889 0.92201 0.92235 0.89396 0.86278 0.90722 0.88746 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 8.57 36.00 0.31 -0.65 16 2 C 0.11 1.56 6.53 -82.40 -0.54 1.02 16 3 N -0.30 -4.12 12.70 33.67 0.43 -3.69 16 4 N -0.48 -5.02 7.36 33.47 0.25 -4.77 16 5 H 0.44 3.02 8.96 -182.60 -1.64 1.38 16 6 C 0.10 1.01 7.21 -82.27 -0.59 0.42 16 7 C -0.10 -0.64 10.06 36.01 0.36 -0.28 16 8 C -0.22 -2.78 4.37 -105.05 -0.46 -3.24 16 9 C 0.00 -0.05 2.99 -92.92 -0.28 -0.33 16 10 H 0.11 1.14 6.79 -51.93 -0.35 0.79 16 11 C -0.14 -1.53 8.99 37.16 0.33 -1.20 16 12 C 0.46 7.28 6.29 36.01 0.23 7.51 16 13 O -0.51 -9.17 13.61 -18.75 -0.26 -9.42 16 14 O -0.35 -6.28 10.11 -39.25 -0.40 -6.67 16 15 C 0.14 2.57 5.58 36.01 0.20 2.77 16 16 C -0.23 -5.09 5.54 -104.33 -0.58 -5.66 16 17 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 18 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 19 C 0.12 3.06 5.58 -106.82 -0.60 2.46 16 20 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 21 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 22 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 23 N -0.79 -19.65 10.95 55.55 0.61 -19.04 16 24 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 29 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16 30 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.11 5.30 -51.93 -0.28 0.83 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.53 7.15 -51.93 -0.37 0.16 16 36 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.67 6.16 -51.93 -0.32 0.35 16 39 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.06 1.09 8.07 -51.93 -0.42 0.68 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 43 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 44 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 45 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -30.72 375.01 -9.73 -40.45 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -7.46 Total: 6.51 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -3.53 Total: -21.99 kcal Atomic # 7 Polarization: -28.78 SS G_CDS: 1.28 Total: -27.50 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.65 Total: -16.10 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.72 -9.73 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786328186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.333 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds