Wall clock time and date at job start Tue Mar 31 2020 15:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30843 * 125.89936 * 2 1 4 4 N 1.40080 * 108.20386 * 180.02562 * 3 2 1 5 5 H 0.97013 * 126.03477 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92903 * 359.75938 * 4 3 2 7 7 C 1.50699 * 126.12881 * 180.24110 * 6 4 3 8 8 C 1.35311 * 107.74518 * 0.38752 * 6 4 3 9 9 C 1.50702 * 126.04154 * 179.87830 * 8 6 4 10 10 H 1.08997 * 109.47016 * 359.71154 * 9 8 6 11 11 C 1.52997 * 109.47215 * 119.71641 * 9 8 6 12 12 C 1.50706 * 109.46849 * 239.71331 * 9 8 6 13 13 O 1.20827 * 120.00007 * 359.97438 * 12 9 8 14 14 O 1.34228 * 119.99869 * 179.97438 * 12 9 8 15 15 C 1.45193 * 116.99977 * 180.02562 * 14 12 9 16 16 C 1.50703 * 109.47034 * 180.02562 * 15 14 12 17 17 C 1.38635 * 119.74806 * 269.72519 * 16 15 14 18 18 C 1.37615 * 120.24712 * 179.72224 * 17 16 15 19 19 C 1.40721 * 119.74494 * 0.56988 * 18 17 16 20 20 C 1.41394 * 120.24511 * 179.68162 * 19 18 17 21 21 H 1.07995 * 120.00017 * 204.40679 * 20 19 18 22 22 C 1.39941 * 119.99821 * 24.40304 * 20 19 18 23 23 N 1.30823 * 120.00521 * 17.86102 * 22 20 19 24 24 Si 1.86802 * 119.99977 * 197.85560 * 22 20 19 25 25 H 1.48500 * 109.46905 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47243 * 120.00475 * 24 22 20 27 27 H 1.48506 * 109.47381 * 240.00184 * 24 22 20 28 28 C 1.40717 * 119.51259 * 359.70832 * 19 18 17 29 29 C 1.37619 * 119.74137 * 359.97438 * 28 19 18 30 30 H 1.09001 * 109.47158 * 269.97781 * 1 2 3 31 31 H 1.09003 * 109.47401 * 29.97616 * 1 2 3 32 32 H 1.08998 * 109.47451 * 149.97639 * 1 2 3 33 33 H 1.08999 * 109.47201 * 270.17395 * 7 6 4 34 34 H 1.09002 * 109.47012 * 30.17303 * 7 6 4 35 35 H 1.09002 * 109.47328 * 150.17210 * 7 6 4 36 36 H 1.08996 * 109.46980 * 179.97438 * 11 9 8 37 37 H 1.09007 * 109.46890 * 299.99936 * 11 9 8 38 38 H 1.08997 * 109.47526 * 59.99825 * 11 9 8 39 39 H 1.09006 * 109.47155 * 300.00067 * 15 14 12 40 40 H 1.09003 * 109.47361 * 59.99974 * 15 14 12 41 41 H 1.08000 * 119.87465 * 359.97438 * 17 16 15 42 42 H 1.08000 * 120.13241 * 180.27934 * 18 17 16 43 43 H 0.97002 * 120.00609 * 180.02562 * 23 22 20 44 44 H 1.07994 * 120.13193 * 179.97438 * 28 19 18 45 45 H 1.08001 * 119.87501 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8350 -1.5989 0.0109 8 6 2.3272 -1.1330 -0.0006 9 6 1.8599 -2.5658 -0.0003 10 1 2.7243 -3.2298 -0.0005 11 6 1.0164 -2.8269 1.2492 12 6 1.0284 -2.8232 -1.2305 13 8 0.8347 -1.9343 -2.0257 14 8 0.5030 -4.0400 -1.4429 15 6 -0.2864 -4.2158 -2.6487 16 6 -0.7906 -5.6344 -2.7167 17 6 -0.0323 -6.6042 -3.3543 18 6 -0.4802 -7.9038 -3.4174 19 6 -1.7185 -8.2443 -2.8421 20 6 -2.1920 -9.5750 -2.9066 21 1 -3.2512 -9.7752 -2.8398 22 6 -1.2882 -10.6327 -3.0572 23 7 -0.0198 -10.4522 -2.7923 24 14 -1.8927 -12.3026 -3.6364 25 1 -3.3586 -12.2456 -3.8671 26 1 -1.2066 -12.6657 -4.9023 27 1 -1.5935 -13.3240 -2.6007 28 6 -2.4824 -7.2505 -2.2025 29 6 -2.0116 -5.9586 -2.1457 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 5.1338 -1.8132 -1.0152 34 1 5.6489 -1.0902 0.5276 35 1 4.6053 -2.5322 0.5249 36 1 0.6781 -3.8630 1.2492 37 1 1.6178 -2.6406 2.1390 38 1 0.1520 -2.1628 1.2494 39 1 -1.1334 -3.5299 -2.6317 40 1 0.3323 -4.0075 -3.5217 41 1 0.9153 -6.3394 -3.7996 42 1 0.1141 -8.6588 -3.9107 43 1 0.6068 -11.1852 -2.8971 44 1 -3.4343 -7.5006 -1.7580 45 1 -2.5963 -5.1940 -1.6557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786328186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:12 Heat of formation + Delta-G solvation = -28.703508 kcal Electronic energy + Delta-G solvation = -27041.867094 eV Core-core repulsion = 23217.362124 eV Total energy + Delta-G solvation = -3824.504970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57170 -41.23027 -39.45170 -37.46842 -35.66429 -35.44770 -34.30401 -32.55896 -31.29930 -31.18072 -29.04847 -28.91509 -27.70138 -26.07997 -24.98548 -22.92361 -22.39771 -21.74924 -21.17958 -20.13224 -19.24587 -18.71399 -18.17261 -17.39435 -17.29750 -16.89997 -16.15641 -15.87592 -15.65697 -15.43119 -15.20849 -14.68605 -14.46345 -14.26076 -14.17593 -13.87586 -13.78701 -13.67647 -13.53202 -13.50100 -13.28669 -13.14979 -12.98548 -12.82647 -12.65669 -12.56820 -12.54589 -12.29864 -12.05791 -11.62927 -11.50853 -11.39218 -11.27005 -11.17220 -11.00795 -10.20028 -9.45724 -9.39233 -9.28544 -8.66576 -6.36988 0.74438 0.87815 1.14125 1.31617 1.39552 1.42794 1.55350 1.59824 1.94850 2.17831 2.22279 2.76388 3.58071 3.67771 3.71439 3.84170 4.12901 4.14545 4.16788 4.20641 4.21967 4.34870 4.51273 4.52056 4.58780 4.60029 4.71378 4.72770 4.76398 4.89486 5.01121 5.03547 5.10974 5.12155 5.14563 5.18839 5.32206 5.33616 5.42425 5.62096 5.67810 5.68048 5.92137 6.08417 6.18003 6.34842 6.43476 6.67210 6.71218 6.90294 6.91291 7.00111 8.30187 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.002287 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.376193 B =12242.492849 C =12735.435905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.097 3.903 3 N -0.334 5.334 4 N -0.470 5.470 5 H 0.451 0.549 6 C 0.111 3.889 7 C -0.098 4.098 8 C -0.249 4.249 9 C 0.004 3.996 10 H 0.130 0.870 11 C -0.139 4.139 12 C 0.458 3.542 13 O -0.531 6.531 14 O -0.358 6.358 15 C 0.141 3.859 16 C -0.227 4.227 17 C -0.081 4.081 18 C -0.193 4.193 19 C 0.087 3.913 20 C -0.493 4.493 21 H 0.079 0.921 22 C 0.035 3.965 23 N -0.817 5.817 24 Si 0.983 3.017 25 H -0.258 1.258 26 H -0.264 1.264 27 H -0.265 1.265 28 C -0.245 4.245 29 C -0.064 4.064 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.290 0.710 44 H 0.102 0.898 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 13.939 7.664 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 N -0.158 5.158 4 N -0.179 5.179 5 H 0.297 0.703 6 C -0.020 4.020 7 C -0.156 4.156 8 C -0.260 4.260 9 C -0.016 4.016 10 H 0.148 0.852 11 C -0.197 4.197 12 C 0.302 3.698 13 O -0.421 6.421 14 O -0.275 6.275 15 C 0.069 3.931 16 C -0.228 4.228 17 C -0.099 4.099 18 C -0.213 4.213 19 C 0.084 3.916 20 C -0.521 4.521 21 H 0.097 0.903 22 C -0.181 4.181 23 N -0.443 5.443 24 Si 0.804 3.196 25 H -0.181 1.181 26 H -0.189 1.189 27 H -0.189 1.189 28 C -0.264 4.264 29 C -0.083 4.083 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.606 15.349 7.418 19.568 hybrid contribution 0.077 -1.159 -0.632 1.322 sum 9.683 14.190 6.787 18.471 Atomic orbital electron populations 1.20319 0.86701 1.03187 1.03317 1.22309 0.97427 0.90338 0.96865 1.77214 0.87685 1.22876 1.28000 1.46118 1.07073 1.05095 1.59638 0.70264 1.21348 0.97288 0.85300 0.98018 1.20714 0.91823 0.98427 1.04646 1.19229 0.92237 0.94226 1.20287 1.19238 0.98415 0.93480 0.90473 0.85210 1.21811 0.99837 1.02711 0.95301 1.24360 0.77699 0.79801 0.87945 1.90614 1.58227 1.45797 1.47469 1.86683 1.62165 1.33764 1.44868 1.21505 0.93313 0.94046 0.84237 1.18992 0.97989 0.93970 1.11841 1.20765 0.97758 0.92953 0.98438 1.21260 0.99446 0.95101 1.05472 1.18041 0.91938 0.93565 0.88013 1.19932 0.95152 0.91498 1.45568 0.90329 1.26799 0.94381 1.05042 0.91851 1.69875 1.04791 1.35662 1.33948 0.85144 0.79786 0.75910 0.78803 1.18147 1.18889 1.18936 1.21175 1.02509 0.94181 1.08546 1.20700 0.95126 0.95574 0.96854 0.88808 0.91183 0.91370 0.89327 0.88261 0.88134 0.91219 0.89230 0.92159 0.91104 0.91827 0.87682 0.87819 0.89904 0.87974 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.82 8.57 71.23 0.61 -1.21 16 2 C 0.10 2.54 6.53 43.10 0.28 2.83 16 3 N -0.33 -8.80 12.70 -47.38 -0.60 -9.40 16 4 N -0.47 -8.94 7.36 -48.01 -0.35 -9.29 16 5 H 0.45 5.27 8.96 -213.32 -1.91 3.35 16 6 C 0.11 2.03 7.21 41.40 0.30 2.33 16 7 C -0.10 -0.95 10.06 71.24 0.72 -0.23 16 8 C -0.25 -5.79 4.37 -20.14 -0.09 -5.88 16 9 C 0.00 0.09 2.99 -12.28 -0.04 0.05 16 10 H 0.13 2.35 6.79 -2.39 -0.02 2.33 16 11 C -0.14 -2.71 8.99 71.98 0.65 -2.07 16 12 C 0.46 13.96 6.29 71.24 0.45 14.41 16 13 O -0.53 -18.66 13.61 21.96 0.30 -18.36 16 14 O -0.36 -12.39 10.11 -51.39 -0.52 -12.91 16 15 C 0.14 5.14 5.58 71.24 0.40 5.54 16 16 C -0.23 -9.69 5.54 -19.67 -0.11 -9.80 16 17 C -0.08 -3.73 9.67 22.22 0.21 -3.52 16 18 C -0.19 -10.09 8.70 22.73 0.20 -9.89 16 19 C 0.09 4.64 5.58 -21.29 -0.12 4.53 16 20 C -0.49 -26.09 9.05 23.46 0.21 -25.88 16 21 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 22 C 0.04 1.73 5.14 85.26 0.44 2.17 16 23 N -0.82 -41.77 10.95 21.83 0.24 -41.53 16 24 Si 0.98 37.13 29.59 68.60 2.03 39.16 16 25 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 26 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 27 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 28 C -0.24 -11.85 9.80 22.73 0.22 -11.62 16 29 C -0.06 -2.79 9.67 22.22 0.21 -2.57 16 30 H 0.09 1.78 7.92 -2.39 -0.02 1.76 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.81 5.30 -2.39 -0.01 1.79 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.80 7.15 -2.39 -0.02 0.78 16 36 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 37 H 0.09 1.35 8.14 -2.38 -0.02 1.34 16 38 H 0.06 1.19 6.16 -2.39 -0.01 1.18 16 39 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 40 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 41 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 43 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 44 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 45 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -67.60 375.01 4.76 -62.85 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.89 Total: 30.30 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 4.55 Total: -40.82 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.72 Total: -60.22 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.22 Total: -31.27 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -67.60 4.76 -62.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786328186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.143 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds