Wall clock time and date at job start Tue Mar 31 2020 15:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30835 * 125.89736 * 2 1 4 4 N 1.40087 * 108.20768 * 180.02562 * 3 2 1 5 5 H 0.96992 * 126.04042 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.92256 * 0.02562 * 4 3 2 7 7 C 1.50695 * 126.12676 * 180.02562 * 6 4 3 8 8 C 1.35321 * 107.74735 * 359.97438 * 6 4 3 9 9 C 1.50694 * 126.04167 * 179.97438 * 8 6 4 10 10 H 1.09007 * 109.47030 * 0.02562 * 9 8 6 11 11 C 1.52997 * 109.47366 * 240.00200 * 9 8 6 12 12 C 1.50701 * 109.46871 * 120.00032 * 9 8 6 13 13 O 1.20825 * 120.00217 * 0.02562 * 12 9 8 14 14 O 1.34234 * 119.99528 * 180.02562 * 12 9 8 15 15 C 1.45203 * 116.99553 * 180.02562 * 14 12 9 16 16 C 1.50699 * 109.47123 * 179.97438 * 15 14 12 17 17 C 1.38638 * 119.75110 * 269.73193 * 16 15 14 18 18 C 1.37619 * 120.24672 * 179.72145 * 17 16 15 19 19 C 1.40704 * 119.74520 * 0.56628 * 18 17 16 20 20 C 1.41398 * 120.24400 * 179.68541 * 19 18 17 21 21 H 1.08009 * 119.99993 * 204.40847 * 20 19 18 22 22 C 1.39943 * 120.00329 * 24.40289 * 20 19 18 23 23 N 1.30826 * 119.99491 * 17.85359 * 22 20 19 24 24 Si 1.86799 * 120.00290 * 197.84913 * 22 20 19 25 25 H 1.48501 * 109.46838 * 90.00557 * 24 22 20 26 26 H 1.48500 * 109.46931 * 209.99937 * 24 22 20 27 27 H 1.48497 * 109.47176 * 329.99933 * 24 22 20 28 28 C 1.40720 * 119.51409 * 359.70652 * 19 18 17 29 29 C 1.37612 * 119.74241 * 359.97438 * 28 19 18 30 30 H 1.08997 * 109.47196 * 90.02219 * 1 2 3 31 31 H 1.09005 * 109.46969 * 210.01929 * 1 2 3 32 32 H 1.08999 * 109.47470 * 330.02336 * 1 2 3 33 33 H 1.09004 * 109.47315 * 89.97424 * 7 6 4 34 34 H 1.08998 * 109.47451 * 209.97146 * 7 6 4 35 35 H 1.08994 * 109.47216 * 329.97406 * 7 6 4 36 36 H 1.09000 * 109.47312 * 179.97438 * 11 9 8 37 37 H 1.08997 * 109.47097 * 300.00155 * 11 9 8 38 38 H 1.09006 * 109.46877 * 60.00477 * 11 9 8 39 39 H 1.08996 * 109.47694 * 300.00015 * 15 14 12 40 40 H 1.09000 * 109.47068 * 60.00385 * 15 14 12 41 41 H 1.07998 * 119.87067 * 359.97311 * 17 16 15 42 42 H 1.08004 * 120.12496 * 180.28015 * 18 17 16 43 43 H 0.97003 * 119.99921 * 180.02562 * 23 22 20 44 44 H 1.08002 * 120.12472 * 179.97438 * 28 19 18 45 45 H 1.07999 * 119.87506 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6143 -0.7153 -0.0015 7 6 4.8351 -1.5988 -0.0019 8 6 2.3271 -1.1331 -0.0009 9 6 1.8599 -2.5657 -0.0022 10 1 2.7244 -3.2298 -0.0031 11 6 1.0151 -2.8257 -1.2510 12 6 1.0298 -2.8244 1.2287 13 8 0.8369 -1.9363 2.0249 14 8 0.5046 -4.0414 1.4404 15 6 -0.2844 -4.2181 2.6465 16 6 -0.7884 -5.6368 2.7137 17 6 -2.0123 -5.9596 2.1481 18 6 -2.4798 -7.2530 2.1986 19 6 -1.7159 -8.2469 2.8377 20 6 -2.1892 -9.5778 2.9015 21 1 -1.8454 -10.2361 3.6858 22 6 -3.1030 -10.0420 1.9487 23 7 -3.2568 -9.3966 0.8212 24 14 -4.1029 -11.5832 2.2867 25 1 -5.3732 -11.2112 2.9601 26 1 -4.4048 -12.2685 1.0044 27 1 -3.3259 -12.4949 3.1643 28 6 -0.4777 -7.9065 3.4133 29 6 -0.0270 -6.6081 3.3451 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 5.1295 -1.8122 1.0257 34 1 4.6076 -2.5327 -0.5159 35 1 5.6511 -1.0908 -0.5155 36 1 0.6776 -3.8621 -1.2521 37 1 0.1508 -2.1617 -1.2496 38 1 1.6157 -2.6387 -2.1413 39 1 0.3344 -4.0103 3.5193 40 1 -1.1316 -3.5324 2.6301 41 1 -2.5992 -5.1939 1.6626 42 1 -3.4314 -7.5032 1.7534 43 1 -3.8905 -9.7181 0.1608 44 1 0.1165 -8.6615 3.9066 45 1 0.9228 -6.3445 3.7864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786328187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:17 Heat of formation + Delta-G solvation = -13.150712 kcal Electronic energy + Delta-G solvation = -27050.810825 eV Core-core repulsion = 23226.980274 eV Total energy + Delta-G solvation = -3823.830551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66139 -39.93661 -37.68117 -36.05599 -34.47139 -33.84529 -33.48471 -30.89729 -30.37045 -29.35502 -28.13593 -27.25912 -26.92716 -24.74991 -23.55968 -21.22014 -21.05493 -20.29696 -20.01713 -19.15610 -17.65187 -17.38028 -16.98696 -16.12944 -15.85897 -15.36609 -15.16078 -14.58506 -14.24748 -13.85840 -13.79395 -13.75063 -13.48449 -13.15534 -12.95714 -12.69476 -12.63032 -12.56285 -12.32807 -12.20948 -12.02699 -11.88724 -11.72649 -11.66087 -11.42797 -11.18302 -10.98375 -10.79718 -10.50774 -10.41234 -10.07525 -10.00612 -9.66472 -9.45364 -9.31677 -9.21919 -8.55200 -7.55033 -7.43742 -6.85751 -4.45509 1.68917 2.39817 2.55412 2.64723 2.70511 3.00909 3.01456 3.05120 3.06168 3.52927 3.86319 4.40854 4.49753 4.53172 4.76947 4.85533 5.03304 5.11784 5.22206 5.30600 5.35605 5.54175 5.60374 5.62024 5.64181 5.70467 5.73521 5.78998 5.95267 5.97407 5.99057 6.14110 6.18443 6.26812 6.32807 6.57608 6.87678 6.96432 6.98669 7.14241 7.19722 7.27855 7.52786 7.59210 7.75546 7.96838 8.02538 8.20141 8.20528 8.55081 8.79667 8.87937 10.08031 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026096 B = 0.002259 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.690666 B =12391.293541 C =12537.742927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.115 3.885 3 N -0.301 5.301 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.097 3.903 7 C -0.097 4.097 8 C -0.221 4.221 9 C -0.004 4.004 10 H 0.109 0.891 11 C -0.143 4.143 12 C 0.457 3.543 13 O -0.510 6.510 14 O -0.348 6.348 15 C 0.136 3.864 16 C -0.234 4.234 17 C -0.075 4.075 18 C -0.170 4.170 19 C 0.118 3.882 20 C -0.457 4.457 21 H 0.080 0.920 22 C 0.075 3.925 23 N -0.785 5.785 24 Si 0.910 3.090 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.230 4.230 29 C -0.064 4.064 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.282 0.718 44 H 0.094 0.906 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.659 12.747 -5.303 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 N -0.124 5.124 4 N -0.186 5.186 5 H 0.280 0.720 6 C -0.032 4.032 7 C -0.156 4.156 8 C -0.232 4.232 9 C -0.024 4.024 10 H 0.127 0.873 11 C -0.201 4.201 12 C 0.300 3.700 13 O -0.398 6.398 14 O -0.265 6.265 15 C 0.064 3.936 16 C -0.235 4.235 17 C -0.094 4.094 18 C -0.190 4.190 19 C 0.115 3.885 20 C -0.486 4.486 21 H 0.098 0.902 22 C -0.144 4.144 23 N -0.410 5.410 24 Si 0.734 3.266 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.250 4.250 29 C -0.083 4.083 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.466 14.234 -5.265 18.435 hybrid contribution 0.042 -1.138 0.221 1.160 sum 10.507 13.096 -5.044 17.531 Atomic orbital electron populations 1.20341 0.86882 1.04139 1.02393 1.22057 0.96858 0.89742 0.96572 1.77290 0.86287 1.22193 1.26648 1.46063 1.07408 1.04563 1.60583 0.71988 1.20792 0.96592 0.85170 1.00643 1.20529 0.92780 0.98499 1.03752 1.19109 0.91394 0.94520 1.18183 1.19158 0.98258 0.92936 0.92068 0.87348 1.21815 0.99719 1.03376 0.95148 1.23598 0.78180 0.81051 0.87216 1.90620 1.57394 1.45480 1.46343 1.86719 1.61926 1.32270 1.45576 1.21694 0.92600 0.95932 0.83366 1.18689 0.98784 0.92756 1.13263 1.20537 0.94980 0.96156 0.97724 1.21293 1.01120 0.91151 1.05398 1.17682 0.89427 0.93106 0.88266 1.19679 1.21254 0.96967 1.10661 0.90201 1.25965 0.95803 0.98821 0.93804 1.69830 1.28546 1.37962 1.04629 0.86278 0.80407 0.81032 0.78853 1.19166 1.20222 1.18537 1.20960 0.97978 0.95140 1.10894 1.20384 0.96795 0.93206 0.97886 0.90667 0.89888 0.90924 0.89886 0.89243 0.90898 0.90466 0.91858 0.91404 0.92297 0.92140 0.89316 0.86255 0.90654 0.88777 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 8.57 36.01 0.31 -0.66 16 2 C 0.11 1.57 6.53 -82.40 -0.54 1.03 16 3 N -0.30 -4.13 12.70 33.67 0.43 -3.70 16 4 N -0.48 -5.01 7.36 33.48 0.25 -4.76 16 5 H 0.44 3.00 8.96 -182.61 -1.64 1.37 16 6 C 0.10 1.00 7.21 -82.26 -0.59 0.41 16 7 C -0.10 -0.63 10.06 36.00 0.36 -0.27 16 8 C -0.22 -2.78 4.36 -105.05 -0.46 -3.23 16 9 C 0.00 -0.05 2.99 -92.93 -0.28 -0.32 16 10 H 0.11 1.12 6.79 -51.93 -0.35 0.77 16 11 C -0.14 -1.57 8.99 37.16 0.33 -1.23 16 12 C 0.46 7.28 6.30 36.01 0.23 7.51 16 13 O -0.51 -9.17 13.62 -18.75 -0.26 -9.42 16 14 O -0.35 -6.28 10.11 -39.27 -0.40 -6.67 16 15 C 0.14 2.57 5.58 36.01 0.20 2.77 16 16 C -0.23 -5.09 5.54 -104.33 -0.58 -5.66 16 17 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 18 C -0.17 -4.31 8.70 -38.88 -0.34 -4.65 16 19 C 0.12 3.06 5.57 -106.83 -0.60 2.47 16 20 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 21 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 22 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 23 N -0.79 -19.64 10.95 55.55 0.61 -19.03 16 24 Si 0.91 18.02 29.60 -169.99 -5.03 12.99 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 27 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 28 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 29 C -0.06 -1.42 9.67 -39.66 -0.38 -1.81 16 30 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 31 H 0.08 1.13 5.30 -51.93 -0.28 0.85 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.51 7.14 -51.93 -0.37 0.14 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.90 8.11 -51.93 -0.42 0.47 16 37 H 0.06 0.69 6.15 -51.93 -0.32 0.37 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 41 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 43 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 44 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 45 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -30.68 375.01 -9.73 -40.41 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.46 Total: 6.57 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -3.53 Total: -22.04 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: 1.28 Total: -27.49 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.65 Total: -16.10 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.68 -9.73 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786328187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.262 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds